Wall clock time and date at job start Tue Mar 31 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46751 * 2 1 4 4 N 1.46500 * 109.46713 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99834 * 273.90587 * 4 3 2 6 6 C 1.53005 * 109.46965 * 270.00409 * 5 4 3 7 7 C 1.53006 * 109.46938 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00070 * 93.90958 * 4 3 2 9 9 O 1.21590 * 119.99870 * 175.70079 * 8 4 3 10 10 C 1.47533 * 119.99706 * 355.70210 * 8 4 3 11 11 C 1.39663 * 120.19757 * 58.79805 * 10 8 4 12 12 C 1.37837 * 119.91618 * 180.29100 * 11 10 8 13 13 C 1.38569 * 120.32362 * 359.70236 * 12 11 10 14 14 C 1.38025 * 120.40106 * 359.97438 * 13 12 11 15 15 C 1.38833 * 120.07349 * 0.02562 * 14 13 12 16 16 O 1.35520 * 120.16248 * 179.97438 * 15 14 13 17 17 C 1.34817 * 117.00088 * 5.85333 * 16 15 14 18 18 H 1.08001 * 119.99823 * 354.86728 * 17 16 15 19 19 C 1.38701 * 120.00182 * 174.85753 * 17 16 15 20 20 N 1.31511 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47473 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47006 * 120.00420 * 21 19 17 24 24 H 1.48502 * 109.47014 * 240.00195 * 21 19 17 25 25 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46851 * 299.99990 * 1 2 3 27 27 H 1.08994 * 109.47505 * 60.00190 * 1 2 3 28 28 H 1.09001 * 109.46851 * 240.00009 * 2 1 3 29 29 H 1.09000 * 109.47114 * 119.99601 * 2 1 3 30 30 H 1.09000 * 109.47311 * 59.99830 * 3 2 1 31 31 H 1.09007 * 109.46705 * 299.99930 * 3 2 1 32 32 H 1.08996 * 109.47363 * 30.00045 * 5 4 3 33 33 H 1.08995 * 109.47437 * 150.00345 * 5 4 3 34 34 H 1.08997 * 109.46932 * 299.99460 * 6 5 4 35 35 H 1.08993 * 109.47378 * 60.00452 * 6 5 4 36 36 H 1.09005 * 109.46860 * 59.99791 * 7 6 5 37 37 H 1.09001 * 109.47272 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47430 * 300.00195 * 7 6 5 39 39 H 1.08003 * 120.04617 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.83586 * 179.72031 * 12 11 10 41 41 H 1.08001 * 119.79658 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96255 * 180.02562 * 14 13 12 43 43 H 0.97000 * 120.00427 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.3560 1.2648 6 6 4.4931 2.7650 1.8039 7 6 5.2581 2.6745 3.1259 8 6 4.1784 1.5223 -1.1654 9 8 5.3917 1.6012 -1.1620 10 6 3.4433 1.5140 -2.4445 11 6 2.4856 2.4951 -2.7107 12 6 1.7979 2.4782 -3.9052 13 6 2.0561 1.4955 -4.8473 14 6 3.0045 0.5235 -4.6008 15 6 3.7069 0.5247 -3.4033 16 8 4.6381 -0.4292 -3.1591 17 6 4.9226 -1.2789 -4.1664 18 1 4.3583 -1.2343 -5.0861 19 6 5.9402 -2.2102 -4.0216 20 7 6.6271 -2.2647 -2.9015 21 14 6.3348 -3.3870 -5.4176 22 1 5.4245 -3.1222 -6.5606 23 1 7.7417 -3.1886 -5.8495 24 1 6.1523 -4.7855 -4.9526 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8901 32 1 3.6492 0.7915 1.9879 33 1 5.1903 0.8523 1.0994 34 1 5.0819 3.3295 1.0809 35 1 3.5408 3.2687 1.9695 36 1 6.2104 2.1706 2.9608 37 1 5.4402 3.6783 3.5097 38 1 4.6690 2.1101 3.8487 39 1 2.2810 3.2635 -1.9799 40 1 1.0543 3.2349 -4.1078 41 1 1.5125 1.4907 -5.7806 42 1 3.2003 -0.2389 -5.3403 43 1 7.3385 -2.9163 -2.8000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194150554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:06 Heat of formation + Delta-G solvation = -46.354161 kcal Electronic energy + Delta-G solvation = -24087.294167 eV Core-core repulsion = 20712.128139 eV Total energy + Delta-G solvation = -3375.166028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90037 -38.39704 -36.38921 -35.88819 -34.07391 -32.34888 -31.91242 -30.46105 -28.98621 -26.66781 -25.61955 -25.32142 -22.79126 -21.96672 -21.33828 -21.04312 -18.96314 -18.06989 -17.17448 -16.37686 -15.96325 -14.94883 -14.80719 -14.56748 -14.41774 -14.20367 -14.03712 -13.77060 -13.62500 -13.18082 -13.03871 -12.75816 -12.45014 -12.09638 -11.92210 -11.87062 -11.73576 -11.43702 -11.35831 -11.23553 -11.10314 -11.00631 -10.91466 -10.76456 -10.49509 -10.46232 -10.39718 -9.59689 -8.98725 -8.88283 -8.29585 -8.08511 -7.32794 -6.46580 -4.06805 1.84574 2.28476 3.10785 3.12686 3.18065 3.39278 3.58744 3.92916 4.48008 4.99277 5.02334 5.11496 5.11896 5.16520 5.24358 5.30985 5.39998 5.51480 5.53777 5.58334 5.63518 5.74818 5.81445 5.87545 5.90374 5.98443 6.01036 6.12973 6.15169 6.16369 6.32040 6.32794 6.43428 6.53693 6.55948 6.66546 6.94935 7.02352 7.08131 7.24817 7.29583 7.67539 7.90134 7.98333 8.93198 8.96465 9.63974 10.69354 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.005759 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.909666 B = 4861.185504 C = 5839.393282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.105 3.895 4 N -0.617 5.617 5 C 0.118 3.882 6 C -0.138 4.138 7 C -0.148 4.148 8 C 0.579 3.421 9 O -0.519 6.519 10 C -0.209 4.209 11 C -0.047 4.047 12 C -0.221 4.221 13 C -0.057 4.057 14 C -0.233 4.233 15 C 0.186 3.814 16 O -0.154 6.154 17 C -0.398 4.398 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.846 5.846 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 6.558 6.123 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.018 4.018 4 N -0.351 5.351 5 C -0.004 4.004 6 C -0.177 4.177 7 C -0.206 4.206 8 C 0.368 3.632 9 O -0.394 6.394 10 C -0.214 4.214 11 C -0.066 4.066 12 C -0.240 4.240 13 C -0.076 4.076 14 C -0.252 4.252 15 C 0.129 3.871 16 O -0.054 6.054 17 C -0.474 4.474 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.479 5.479 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.201 1.201 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.785 6.376 6.431 13.333 hybrid contribution 0.076 -0.652 -0.744 0.992 sum -9.709 5.724 5.687 12.625 Atomic orbital electron populations 1.21672 0.95536 1.01666 1.01493 1.21925 0.95662 0.97560 1.03020 1.21801 0.79873 0.97110 1.03037 1.47875 1.06309 1.75013 1.05886 1.21393 0.97946 0.96463 0.84640 1.21883 1.00329 0.98100 0.97370 1.21686 1.00585 1.01462 0.96818 1.18197 0.86842 0.74920 0.83236 1.90772 1.13834 1.47661 1.87083 1.18735 1.05685 1.00911 0.96066 1.20639 0.93306 0.95990 0.96639 1.20467 1.05260 1.02375 0.95890 1.20866 0.95523 0.93459 0.97729 1.21131 1.01736 1.03244 0.99111 1.19154 0.88759 0.87670 0.91509 1.83989 1.47468 1.35430 1.38547 1.21434 1.18483 1.12447 0.95038 0.88813 1.25349 0.94986 0.97854 0.98131 1.70076 1.19668 1.33682 1.24434 0.85645 0.78890 0.79261 0.79602 1.18987 1.20012 1.20081 0.92740 0.93094 0.92467 0.91002 0.92193 0.91402 0.89081 0.91246 0.89901 0.91481 0.92360 0.92398 0.92842 0.92888 0.86692 0.87187 0.87186 0.85093 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.27 16 2 C -0.14 -2.03 6.26 -26.73 -0.17 -2.20 16 3 C 0.10 1.47 5.22 -4.04 -0.02 1.45 16 4 N -0.62 -10.90 2.47 -174.91 -0.43 -11.34 16 5 C 0.12 1.86 5.39 -4.04 -0.02 1.84 16 6 C -0.14 -1.85 6.26 -26.73 -0.17 -2.01 16 7 C -0.15 -1.64 9.91 37.16 0.37 -1.28 16 8 C 0.58 13.04 6.73 -12.47 -0.08 12.96 16 9 O -0.52 -14.01 16.57 5.25 0.09 -13.93 16 10 C -0.21 -4.57 5.00 -104.81 -0.52 -5.09 16 11 C -0.05 -0.83 7.59 -39.20 -0.30 -1.12 16 12 C -0.22 -3.60 10.03 -39.61 -0.40 -4.00 16 13 C -0.06 -1.00 10.03 -39.54 -0.40 -1.40 16 14 C -0.23 -4.97 9.16 -39.44 -0.36 -5.33 16 15 C 0.19 4.59 6.66 -38.60 -0.26 4.33 16 16 O -0.15 -4.50 9.09 0.76 0.01 -4.49 16 17 C -0.40 -11.23 9.49 30.90 0.29 -10.94 16 18 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 19 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 20 N -0.85 -25.41 13.67 55.48 0.76 -24.65 16 21 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.09 1.27 4.17 -51.93 -0.22 1.06 16 32 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.12 1.69 7.24 -52.48 -0.38 1.31 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -33.62 357.56 -7.58 -41.20 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.60 Total: 5.17 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.76 Total: -12.96 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.33 Total: -35.98 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.09 Total: -18.42 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.62 -7.58 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194150554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.151 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds