Wall clock time and date at job start Tue Mar 31 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46751 * 2 1 4 4 N 1.46500 * 109.46713 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99834 * 273.90587 * 4 3 2 6 6 C 1.53005 * 109.46965 * 270.00409 * 5 4 3 7 7 C 1.53006 * 109.46938 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00070 * 93.90958 * 4 3 2 9 9 O 1.21590 * 119.99870 * 175.70079 * 8 4 3 10 10 C 1.47533 * 119.99706 * 355.70210 * 8 4 3 11 11 C 1.39663 * 120.19757 * 58.79805 * 10 8 4 12 12 C 1.37837 * 119.91618 * 180.29100 * 11 10 8 13 13 C 1.38569 * 120.32362 * 359.70236 * 12 11 10 14 14 C 1.38025 * 120.40106 * 359.97438 * 13 12 11 15 15 C 1.38833 * 120.07349 * 0.02562 * 14 13 12 16 16 O 1.35520 * 120.16248 * 179.97438 * 15 14 13 17 17 C 1.34817 * 117.00088 * 5.85333 * 16 15 14 18 18 H 1.08001 * 119.99823 * 354.86728 * 17 16 15 19 19 C 1.38701 * 120.00182 * 174.85753 * 17 16 15 20 20 N 1.31511 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47473 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47006 * 120.00420 * 21 19 17 24 24 H 1.48502 * 109.47014 * 240.00195 * 21 19 17 25 25 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46851 * 299.99990 * 1 2 3 27 27 H 1.08994 * 109.47505 * 60.00190 * 1 2 3 28 28 H 1.09001 * 109.46851 * 240.00009 * 2 1 3 29 29 H 1.09000 * 109.47114 * 119.99601 * 2 1 3 30 30 H 1.09000 * 109.47311 * 59.99830 * 3 2 1 31 31 H 1.09007 * 109.46705 * 299.99930 * 3 2 1 32 32 H 1.08996 * 109.47363 * 30.00045 * 5 4 3 33 33 H 1.08995 * 109.47437 * 150.00345 * 5 4 3 34 34 H 1.08997 * 109.46932 * 299.99460 * 6 5 4 35 35 H 1.08993 * 109.47378 * 60.00452 * 6 5 4 36 36 H 1.09005 * 109.46860 * 59.99791 * 7 6 5 37 37 H 1.09001 * 109.47272 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47430 * 300.00195 * 7 6 5 39 39 H 1.08003 * 120.04617 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.83586 * 179.72031 * 12 11 10 41 41 H 1.08001 * 119.79658 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96255 * 180.02562 * 14 13 12 43 43 H 0.97000 * 120.00427 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.3560 1.2648 6 6 4.4931 2.7650 1.8039 7 6 5.2581 2.6745 3.1259 8 6 4.1784 1.5223 -1.1654 9 8 5.3917 1.6012 -1.1620 10 6 3.4433 1.5140 -2.4445 11 6 2.4856 2.4951 -2.7107 12 6 1.7979 2.4782 -3.9052 13 6 2.0561 1.4955 -4.8473 14 6 3.0045 0.5235 -4.6008 15 6 3.7069 0.5247 -3.4033 16 8 4.6381 -0.4292 -3.1591 17 6 4.9226 -1.2789 -4.1664 18 1 4.3583 -1.2343 -5.0861 19 6 5.9402 -2.2102 -4.0216 20 7 6.6271 -2.2647 -2.9015 21 14 6.3348 -3.3870 -5.4176 22 1 5.4245 -3.1222 -6.5606 23 1 7.7417 -3.1886 -5.8495 24 1 6.1523 -4.7855 -4.9526 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8901 32 1 3.6492 0.7915 1.9879 33 1 5.1903 0.8523 1.0994 34 1 5.0819 3.3295 1.0809 35 1 3.5408 3.2687 1.9695 36 1 6.2104 2.1706 2.9608 37 1 5.4402 3.6783 3.5097 38 1 4.6690 2.1101 3.8487 39 1 2.2810 3.2635 -1.9799 40 1 1.0543 3.2349 -4.1078 41 1 1.5125 1.4907 -5.7806 42 1 3.2003 -0.2389 -5.3403 43 1 7.3385 -2.9163 -2.8000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194150554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:05 Heat of formation + Delta-G solvation = -67.824969 kcal Electronic energy + Delta-G solvation = -24088.225211 eV Core-core repulsion = 20712.128139 eV Total energy + Delta-G solvation = -3376.097072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53947 -40.10047 -38.09056 -37.43614 -35.19686 -34.35669 -33.19392 -31.96119 -30.63858 -27.87192 -27.38135 -26.82828 -24.24003 -23.40307 -22.68354 -22.33916 -20.49921 -19.93052 -18.81763 -18.03192 -17.46533 -16.63266 -16.43082 -15.91746 -15.69296 -15.65498 -15.53547 -15.41830 -15.20888 -14.64462 -14.41841 -14.21075 -13.99855 -13.58749 -13.18155 -13.10136 -12.99004 -12.92308 -12.74658 -12.60904 -12.46800 -12.36139 -12.26664 -12.12071 -12.05048 -11.65175 -11.61284 -11.45302 -10.86465 -10.70709 -9.84764 -9.55351 -9.05664 -8.49353 -6.19653 0.26686 0.69233 1.30569 1.40897 1.50431 1.72432 2.12689 2.14671 2.79990 3.11319 3.42071 3.65418 3.97201 3.99470 4.05128 4.10303 4.18311 4.25858 4.34110 4.44961 4.50470 4.53479 4.57995 4.64006 4.70667 4.74251 4.89092 4.94487 4.98446 5.06735 5.10405 5.12497 5.17752 5.22990 5.26352 5.35694 5.43108 5.50360 5.58090 5.69077 5.72480 5.94388 6.15295 6.42445 6.92560 7.27396 7.74461 8.73163 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.005759 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.909666 B = 4861.185504 C = 5839.393282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.101 3.899 4 N -0.608 5.608 5 C 0.113 3.887 6 C -0.127 4.127 7 C -0.144 4.144 8 C 0.567 3.433 9 O -0.585 6.585 10 C -0.223 4.223 11 C -0.043 4.043 12 C -0.187 4.187 13 C -0.049 4.049 14 C -0.247 4.247 15 C 0.144 3.856 16 O -0.218 6.218 17 C -0.418 4.418 18 H 0.107 0.893 19 C -0.024 4.024 20 N -0.916 5.916 21 Si 1.022 2.978 22 H -0.245 1.245 23 H -0.271 1.271 24 H -0.267 1.267 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.166 0.834 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 8.961 5.878 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C -0.020 4.020 4 N -0.339 5.339 5 C -0.010 4.010 6 C -0.166 4.166 7 C -0.202 4.202 8 C 0.357 3.643 9 O -0.465 6.465 10 C -0.227 4.227 11 C -0.061 4.061 12 C -0.205 4.205 13 C -0.067 4.067 14 C -0.267 4.267 15 C 0.091 3.909 16 O -0.123 6.123 17 C -0.494 4.494 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.553 5.553 21 Si 0.841 3.159 22 H -0.168 1.168 23 H -0.197 1.197 24 H -0.192 1.192 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.141 0.859 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.274 8.827 6.200 17.891 hybrid contribution 1.121 -1.097 -0.608 1.682 sum -13.153 7.730 5.592 16.248 Atomic orbital electron populations 1.21622 0.92476 1.02276 1.03135 1.21883 0.98237 0.97233 1.00590 1.22138 0.77140 0.97360 1.05410 1.47986 1.08096 1.72755 1.05105 1.21579 0.96429 0.98460 0.84485 1.21788 1.01546 0.95764 0.97475 1.21674 0.99765 1.02733 0.96002 1.18587 0.86290 0.74421 0.84993 1.90727 1.16588 1.51058 1.88130 1.19100 1.06651 1.01487 0.95479 1.21123 0.91636 0.95057 0.98262 1.21153 1.03880 1.01660 0.93790 1.21382 0.93780 0.91807 0.99685 1.21279 1.02855 1.04641 0.97887 1.19859 0.89001 0.88280 0.93772 1.83974 1.50667 1.37843 1.39785 1.21968 1.19011 1.12779 0.95627 0.87552 1.26730 0.94526 0.99828 1.01156 1.70260 1.21547 1.35896 1.27612 0.84493 0.78822 0.76443 0.76158 1.16780 1.19658 1.19154 0.92800 0.90146 0.91986 0.95940 0.92321 0.86889 0.88533 0.87980 0.94400 0.94606 0.89396 0.94178 0.91063 0.90718 0.82911 0.81687 0.82779 0.85933 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.14 -3.88 6.26 30.60 0.19 -3.69 16 3 C 0.10 2.58 5.22 86.38 0.45 3.03 16 4 N -0.61 -21.76 2.47 -825.56 -2.04 -23.80 16 5 C 0.11 3.62 5.39 86.38 0.47 4.09 16 6 C -0.13 -3.30 6.26 30.60 0.19 -3.11 16 7 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 8 C 0.57 27.00 6.73 86.69 0.58 27.58 16 9 O -0.59 -34.57 16.57 -3.97 -0.07 -34.64 16 10 C -0.22 -9.92 5.00 -19.99 -0.10 -10.02 16 11 C -0.04 -1.35 7.59 22.52 0.17 -1.18 16 12 C -0.19 -5.03 10.03 22.25 0.22 -4.81 16 13 C -0.05 -1.51 10.03 22.30 0.22 -1.29 16 14 C -0.25 -10.61 9.16 22.36 0.20 -10.40 16 15 C 0.14 7.46 6.66 22.91 0.15 7.61 16 16 O -0.22 -13.92 9.09 -20.06 -0.18 -14.10 16 17 C -0.42 -25.38 9.49 67.93 0.64 -24.74 16 18 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 19 C -0.02 -1.46 5.49 84.85 0.47 -0.99 16 20 N -0.92 -60.03 13.67 21.62 0.30 -59.73 16 21 Si 1.02 44.60 29.55 68.60 2.03 46.63 16 22 H -0.24 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.95 8.10 -2.39 -0.02 1.94 16 31 H 0.10 2.35 4.17 -2.38 -0.01 2.34 16 32 H 0.10 2.57 8.07 -2.39 -0.02 2.55 16 33 H 0.04 1.55 7.48 -2.39 -0.02 1.54 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.15 3.71 7.24 -2.91 -0.02 3.69 16 40 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 43 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -87.32 357.56 6.32 -81.00 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.99 Total: 26.83 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.30 Total: -22.19 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.75 Total: -83.53 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.25 Total: -48.73 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -87.32 6.32 -81.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194150554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.171 kcal (2) G-P(sol) polarization free energy of solvation -87.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds