Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 N 1.46504 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99603 * 269.99310 * 4 3 2 6 6 H 1.08003 * 120.00136 * 319.74052 * 5 4 3 7 7 C 1.38808 * 120.00088 * 139.73387 * 5 4 3 8 8 N 1.31626 * 119.99958 * 345.78925 * 7 5 4 9 9 Si 1.86804 * 120.00342 * 165.78882 * 7 5 4 10 10 H 1.48497 * 109.46803 * 60.00015 * 9 7 5 11 11 H 1.48495 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46913 * 300.00194 * 9 7 5 13 13 C 1.46492 * 120.00255 * 89.99790 * 4 3 2 14 14 C 1.52996 * 109.47474 * 83.97356 * 13 4 3 15 15 O 1.42898 * 109.46984 * 65.00136 * 14 13 4 16 16 C 1.35603 * 117.00056 * 180.02562 * 15 14 13 17 17 C 1.38691 * 120.16624 * 359.95417 * 16 15 14 18 18 C 1.38058 * 120.10876 * 180.02562 * 17 16 15 19 19 C 1.38624 * 120.45125 * 359.97438 * 18 17 16 20 20 C 1.37675 * 120.34377 * 0.02863 * 19 18 17 21 21 C 1.40017 * 119.87887 * 359.97438 * 20 19 18 22 22 C 1.46787 * 120.22314 * 179.97438 * 21 20 19 23 23 C 1.50707 * 119.99645 * 359.97438 * 22 21 20 24 24 O 1.21293 * 119.99980 * 179.97438 * 22 21 20 25 25 H 1.09006 * 109.47232 * 300.00465 * 1 2 3 26 26 H 1.08997 * 109.46956 * 60.00455 * 1 2 3 27 27 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47634 * 239.99204 * 2 1 3 29 29 H 1.09008 * 109.46563 * 119.99396 * 2 1 3 30 30 H 1.08997 * 109.47700 * 59.99881 * 3 2 1 31 31 H 1.08998 * 109.46886 * 299.99036 * 3 2 1 32 32 H 0.96997 * 119.99881 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46979 * 323.96971 * 13 4 3 34 34 H 1.09005 * 109.47277 * 203.97713 * 13 4 3 35 35 H 1.09001 * 109.47243 * 305.00056 * 14 13 4 36 36 H 1.09005 * 109.47276 * 185.00052 * 14 13 4 37 37 H 1.08000 * 119.94720 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.77242 * 180.27682 * 18 17 16 39 39 H 1.08006 * 119.82807 * 179.97438 * 19 18 17 40 40 H 1.08004 * 120.05741 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47081 * 0.02562 * 23 22 21 42 42 H 1.09003 * 109.46683 * 120.00386 * 23 22 21 43 43 H 1.09004 * 109.46920 * 239.99782 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1851 6 1 3.8423 2.0469 2.0098 7 6 5.3316 0.6654 1.3271 8 7 5.6024 -0.2736 0.4454 9 14 6.4834 0.9524 2.7695 10 1 5.7459 0.7423 4.0412 11 1 7.6198 -0.0003 2.6925 12 1 7.0002 2.3437 2.7211 13 6 4.2370 1.4426 -1.2696 14 6 4.3607 2.8771 -1.7869 15 8 5.1656 3.6405 -0.8862 16 6 5.3750 4.9429 -1.2004 17 6 4.8197 5.4799 -2.3523 18 6 5.0340 6.8059 -2.6713 19 6 5.8034 7.6115 -1.8462 20 6 6.3635 7.0978 -0.6983 21 6 6.1553 5.7548 -0.3612 22 6 6.7494 5.1991 0.8606 23 6 7.5872 6.0745 1.7566 24 8 6.5660 4.0353 1.1490 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 6.4002 -0.8163 0.5444 33 1 3.6986 0.8382 -1.9996 34 1 5.2319 1.0249 -1.1152 35 1 3.3694 3.3249 -1.8570 36 1 4.8263 2.8691 -2.7725 37 1 4.2186 4.8598 -3.0007 38 1 4.5953 7.2196 -3.5673 39 1 5.9649 8.6474 -2.1058 40 1 6.9625 7.7295 -0.0591 41 1 7.6384 7.0796 1.3379 42 1 7.1362 6.1168 2.7481 43 1 8.5927 5.6603 1.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194968525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -28.077850 kcal Electronic energy + Delta-G solvation = -24134.757899 eV Core-core repulsion = 20760.384391 eV Total energy + Delta-G solvation = -3374.373508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02847 -38.03723 -37.06976 -35.77575 -32.73705 -31.78176 -30.96524 -29.70324 -29.12967 -28.09295 -25.37505 -23.91708 -23.20347 -21.89505 -21.03671 -19.72846 -19.31368 -17.71662 -16.65434 -15.95219 -15.65750 -15.23013 -14.69713 -14.45165 -14.34451 -14.28935 -14.11375 -13.70739 -13.57622 -13.02486 -12.81749 -12.65462 -12.18641 -11.97973 -11.92069 -11.59588 -11.43938 -11.26376 -11.08065 -10.94001 -10.82097 -10.61010 -10.38180 -10.28298 -9.97617 -9.75377 -9.71028 -9.53785 -8.95349 -8.86038 -8.20721 -7.83158 -6.36089 -5.55819 -3.16021 1.01513 1.65576 2.92296 3.60867 3.64408 3.83870 3.86556 4.04745 4.46454 4.77906 4.90530 5.00475 5.23698 5.34602 5.44391 5.47862 5.63392 5.66177 5.66908 5.73014 5.79294 5.82808 5.89733 5.99759 6.01488 6.17478 6.26595 6.32753 6.35684 6.38637 6.56438 6.57200 6.61432 6.69403 6.72648 6.82187 6.96969 7.13905 7.34910 7.71321 8.05079 8.07336 8.27088 8.76839 9.39939 10.02748 10.57600 11.47421 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.006551 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.715153 B = 4273.249322 C = 5782.489908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.148 3.852 4 N -0.577 5.577 5 C -0.233 4.233 6 H 0.051 0.949 7 C 0.026 3.974 8 N -0.904 5.904 9 Si 0.886 3.114 10 H -0.292 1.292 11 H -0.300 1.300 12 H -0.250 1.250 13 C 0.147 3.853 14 C 0.034 3.966 15 O -0.241 6.241 16 C 0.195 3.805 17 C -0.233 4.233 18 C -0.053 4.053 19 C -0.191 4.191 20 C -0.043 4.043 21 C -0.210 4.210 22 C 0.364 3.636 23 C -0.196 4.196 24 O -0.393 6.393 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.027 0.973 32 H 0.251 0.749 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 13.889 -5.638 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C 0.022 3.978 4 N -0.297 5.297 5 C -0.363 4.363 6 H 0.069 0.931 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.716 3.284 10 H -0.219 1.219 11 H -0.226 1.226 12 H -0.174 1.174 13 C 0.020 3.980 14 C -0.044 4.044 15 O -0.149 6.149 16 C 0.144 3.856 17 C -0.252 4.252 18 C -0.071 4.071 19 C -0.209 4.209 20 C -0.061 4.061 21 C -0.212 4.212 22 C 0.238 3.762 23 C -0.253 4.253 24 O -0.264 6.264 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.628 12.989 -5.288 14.038 hybrid contribution 0.442 0.307 0.279 0.606 sum -0.186 13.296 -5.009 14.209 Atomic orbital electron populations 1.21763 0.97989 1.00200 1.00548 1.22082 0.92784 1.00973 1.02090 1.20931 0.85792 0.93296 0.97781 1.43674 0.98948 1.84934 1.02111 1.18732 1.07226 1.19244 0.91103 0.93093 1.25057 1.00096 0.94606 0.97524 1.69875 1.26894 1.20786 1.37259 0.86621 0.80578 0.79422 0.81823 1.21870 1.22626 1.17416 1.21016 1.01834 0.87988 0.87163 1.24117 0.92126 0.96881 0.91279 1.86643 1.64598 1.16027 1.47648 1.19662 0.89479 0.85717 0.90741 1.21314 1.07240 0.97316 0.99318 1.21069 0.95072 0.92936 0.98068 1.20844 1.03107 1.00110 0.96888 1.21281 0.96059 0.93031 0.95720 1.20056 1.06855 0.94433 0.99823 1.22169 0.79929 0.89266 0.84868 1.22195 1.01465 1.00683 1.00936 1.90901 1.49076 1.16952 1.69478 0.93483 0.93825 0.93966 0.93158 0.91823 0.94136 0.95508 0.93973 0.93708 0.87245 0.93834 0.93999 0.85256 0.86099 0.86075 0.84977 0.90703 0.89506 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.14 -2.82 6.26 -26.73 -0.17 -2.99 16 3 C 0.15 3.21 5.69 -4.04 -0.02 3.19 16 4 N -0.58 -14.62 2.37 -173.24 -0.41 -15.03 16 5 C -0.23 -6.67 9.29 -15.06 -0.14 -6.81 16 6 H 0.05 1.52 7.87 -52.48 -0.41 1.10 16 7 C 0.03 0.75 5.05 -17.43 -0.09 0.67 16 8 N -0.90 -27.04 11.31 55.49 0.63 -26.41 16 9 Si 0.89 23.53 29.26 -169.99 -4.97 18.56 16 10 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 11 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 12 H -0.25 -6.63 5.63 56.52 0.32 -6.31 16 13 C 0.15 3.48 5.59 -4.05 -0.02 3.46 16 14 C 0.03 0.68 5.08 37.16 0.19 0.87 16 15 O -0.24 -5.41 7.97 -40.41 -0.32 -5.73 16 16 C 0.19 3.65 6.71 -38.59 -0.26 3.39 16 17 C -0.23 -3.56 9.03 -39.48 -0.36 -3.91 16 18 C -0.05 -0.66 10.03 -39.50 -0.40 -1.05 16 19 C -0.19 -2.22 10.02 -39.64 -0.40 -2.61 16 20 C -0.04 -0.55 9.44 -39.12 -0.37 -0.91 16 21 C -0.21 -3.57 5.88 -104.95 -0.62 -4.18 16 22 C 0.36 6.69 7.22 -30.85 -0.22 6.47 16 23 C -0.20 -2.53 10.19 36.01 0.37 -2.16 16 24 O -0.39 -9.45 14.13 -16.36 -0.23 -9.68 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.46 8.14 -51.92 -0.42 1.04 16 30 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 32 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 34 H 0.11 3.01 5.54 -51.93 -0.29 2.73 16 35 H 0.04 0.82 7.59 -51.93 -0.39 0.42 16 36 H 0.04 0.73 7.66 -51.93 -0.40 0.34 16 37 H 0.13 1.82 6.30 -52.49 -0.33 1.49 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.13 1.25 5.93 -52.48 -0.31 0.94 16 41 H 0.07 0.71 5.60 -51.93 -0.29 0.42 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -33.34 352.33 -8.84 -42.18 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.70 Total: -0.62 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.13 Total: -8.58 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.22 Total: -41.44 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.55 Total: -15.41 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.97 Total: 18.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.34 -8.84 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194968525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.101 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds