Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 N 1.46504 * 109.46862 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99603 * 269.99310 * 4 3 2 6 6 H 1.08003 * 120.00136 * 319.74052 * 5 4 3 7 7 C 1.38808 * 120.00088 * 139.73387 * 5 4 3 8 8 N 1.31626 * 119.99958 * 345.78925 * 7 5 4 9 9 Si 1.86804 * 120.00342 * 165.78882 * 7 5 4 10 10 H 1.48497 * 109.46803 * 60.00015 * 9 7 5 11 11 H 1.48495 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46913 * 300.00194 * 9 7 5 13 13 C 1.46492 * 120.00255 * 89.99790 * 4 3 2 14 14 C 1.52996 * 109.47474 * 83.97356 * 13 4 3 15 15 O 1.42898 * 109.46984 * 65.00136 * 14 13 4 16 16 C 1.35603 * 117.00056 * 180.02562 * 15 14 13 17 17 C 1.38691 * 120.16624 * 359.95417 * 16 15 14 18 18 C 1.38058 * 120.10876 * 180.02562 * 17 16 15 19 19 C 1.38624 * 120.45125 * 359.97438 * 18 17 16 20 20 C 1.37675 * 120.34377 * 0.02863 * 19 18 17 21 21 C 1.40017 * 119.87887 * 359.97438 * 20 19 18 22 22 C 1.46787 * 120.22314 * 179.97438 * 21 20 19 23 23 C 1.50707 * 119.99645 * 359.97438 * 22 21 20 24 24 O 1.21293 * 119.99980 * 179.97438 * 22 21 20 25 25 H 1.09006 * 109.47232 * 300.00465 * 1 2 3 26 26 H 1.08997 * 109.46956 * 60.00455 * 1 2 3 27 27 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47634 * 239.99204 * 2 1 3 29 29 H 1.09008 * 109.46563 * 119.99396 * 2 1 3 30 30 H 1.08997 * 109.47700 * 59.99881 * 3 2 1 31 31 H 1.08998 * 109.46886 * 299.99036 * 3 2 1 32 32 H 0.96997 * 119.99881 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46979 * 323.96971 * 13 4 3 34 34 H 1.09005 * 109.47277 * 203.97713 * 13 4 3 35 35 H 1.09001 * 109.47243 * 305.00056 * 14 13 4 36 36 H 1.09005 * 109.47276 * 185.00052 * 14 13 4 37 37 H 1.08000 * 119.94720 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.77242 * 180.27682 * 18 17 16 39 39 H 1.08006 * 119.82807 * 179.97438 * 19 18 17 40 40 H 1.08004 * 120.05741 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47081 * 0.02562 * 23 22 21 42 42 H 1.09003 * 109.46683 * 120.00386 * 23 22 21 43 43 H 1.09004 * 109.46920 * 239.99782 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1851 6 1 3.8423 2.0469 2.0098 7 6 5.3316 0.6654 1.3271 8 7 5.6024 -0.2736 0.4454 9 14 6.4834 0.9524 2.7695 10 1 5.7459 0.7423 4.0412 11 1 7.6198 -0.0003 2.6925 12 1 7.0002 2.3437 2.7211 13 6 4.2370 1.4426 -1.2696 14 6 4.3607 2.8771 -1.7869 15 8 5.1656 3.6405 -0.8862 16 6 5.3750 4.9429 -1.2004 17 6 4.8197 5.4799 -2.3523 18 6 5.0340 6.8059 -2.6713 19 6 5.8034 7.6115 -1.8462 20 6 6.3635 7.0978 -0.6983 21 6 6.1553 5.7548 -0.3612 22 6 6.7494 5.1991 0.8606 23 6 7.5872 6.0745 1.7566 24 8 6.5660 4.0353 1.1490 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 6.4002 -0.8163 0.5444 33 1 3.6986 0.8382 -1.9996 34 1 5.2319 1.0249 -1.1152 35 1 3.3694 3.3249 -1.8570 36 1 4.8263 2.8691 -2.7725 37 1 4.2186 4.8598 -3.0007 38 1 4.5953 7.2196 -3.5673 39 1 5.9649 8.6474 -2.1058 40 1 6.9625 7.7295 -0.0591 41 1 7.6384 7.0796 1.3379 42 1 7.1362 6.1168 2.7481 43 1 8.5927 5.6603 1.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194968525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -46.892073 kcal Electronic energy + Delta-G solvation = -24135.573745 eV Core-core repulsion = 20760.384391 eV Total energy + Delta-G solvation = -3375.189354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29968 -39.51906 -38.43954 -37.51358 -34.53540 -33.00161 -32.84798 -31.07223 -30.31544 -29.58497 -27.25643 -25.43462 -24.55287 -23.41134 -22.48517 -21.40095 -20.66251 -19.01052 -18.69372 -17.20873 -16.97968 -16.79462 -16.63456 -15.91092 -15.74022 -15.61655 -15.48324 -15.33131 -15.04806 -14.73748 -14.40136 -14.00255 -13.57887 -13.41862 -13.01880 -12.93540 -12.90431 -12.83544 -12.66443 -12.50331 -12.44741 -12.27270 -12.10694 -11.97020 -11.81720 -11.69410 -11.50618 -11.31302 -10.44397 -10.30252 -9.94831 -9.06254 -8.45282 -7.75459 -5.37773 -0.12980 0.55292 1.40448 1.46277 1.68293 1.70047 2.49365 2.62179 2.92594 3.30556 3.41825 3.66201 3.88272 4.00869 4.20288 4.25535 4.27112 4.36116 4.39845 4.46794 4.50765 4.59582 4.64886 4.65314 4.69886 4.71100 4.81354 4.93292 4.97379 5.06154 5.16282 5.19435 5.26772 5.37014 5.46282 5.48467 5.54880 5.61084 5.68197 5.82225 5.93370 6.53756 6.72978 6.96347 7.27647 7.93909 8.42824 9.22152 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.006551 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.715153 B = 4273.249322 C = 5782.489908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.147 3.853 4 N -0.592 5.592 5 C -0.225 4.225 6 H 0.031 0.969 7 C -0.016 4.016 8 N -0.925 5.925 9 Si 0.929 3.071 10 H -0.288 1.288 11 H -0.302 1.302 12 H -0.253 1.253 13 C 0.148 3.852 14 C 0.046 3.954 15 O -0.286 6.286 16 C 0.151 3.849 17 C -0.243 4.243 18 C -0.044 4.044 19 C -0.178 4.178 20 C -0.032 4.032 21 C -0.241 4.241 22 C 0.355 3.645 23 C -0.188 4.188 24 O -0.469 6.469 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.244 0.756 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.135 0.865 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 17.674 -7.143 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.022 3.978 4 N -0.313 5.313 5 C -0.356 4.356 6 H 0.048 0.952 7 C -0.212 4.212 8 N -0.571 5.571 9 Si 0.758 3.242 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.178 1.178 13 C 0.021 3.979 14 C -0.031 4.031 15 O -0.197 6.197 16 C 0.102 3.898 17 C -0.262 4.262 18 C -0.062 4.062 19 C -0.195 4.195 20 C -0.050 4.050 21 C -0.243 4.243 22 C 0.234 3.766 23 C -0.244 4.244 24 O -0.345 6.345 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.188 0.812 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.359 16.825 -6.809 18.202 hybrid contribution 0.645 -0.637 0.644 1.112 sum -0.714 16.188 -6.165 17.337 Atomic orbital electron populations 1.21655 0.94088 1.01671 1.01959 1.21912 0.96115 0.99192 0.99766 1.21037 0.83674 0.94422 0.98693 1.43824 1.00486 1.85324 1.01644 1.18656 1.07439 1.17758 0.91726 0.95180 1.25493 1.01311 0.95025 0.99386 1.69996 1.26951 1.21719 1.38453 0.85947 0.79252 0.78830 0.80186 1.21460 1.22938 1.17753 1.20874 0.99579 0.90538 0.86914 1.23755 0.93080 0.94606 0.91663 1.86558 1.65750 1.18406 1.48939 1.20138 0.91906 0.84669 0.93071 1.21481 1.07411 0.98960 0.98344 1.21572 0.93978 0.91519 0.99118 1.21417 1.00806 1.01908 0.95414 1.21711 0.95518 0.91197 0.96539 1.20343 1.07856 0.96341 0.99713 1.23157 0.79000 0.88775 0.85641 1.22205 1.00447 1.01645 1.00131 1.90864 1.52185 1.20083 1.71387 0.92785 0.91652 0.92517 0.94170 0.95472 0.94804 0.92798 0.94696 0.92522 0.91382 0.92593 0.91835 0.84762 0.82340 0.81669 0.81238 0.86562 0.89124 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.91 71.98 0.71 -3.38 16 2 C -0.13 -5.31 6.26 30.59 0.19 -5.11 16 3 C 0.15 6.43 5.69 86.38 0.49 6.92 16 4 N -0.59 -31.18 2.37 -702.01 -1.66 -32.84 16 5 C -0.23 -13.54 9.29 84.03 0.78 -12.76 16 6 H 0.03 1.91 7.87 -2.91 -0.02 1.89 16 7 C -0.02 -1.00 5.05 84.86 0.43 -0.57 16 8 N -0.93 -58.31 11.31 21.65 0.24 -58.07 16 9 Si 0.93 50.98 29.26 68.60 2.01 52.99 16 10 H -0.29 -15.37 7.11 99.48 0.71 -14.66 16 11 H -0.30 -16.54 7.11 99.48 0.71 -15.83 16 12 H -0.25 -13.99 5.63 99.48 0.56 -13.43 16 13 C 0.15 7.26 5.59 86.38 0.48 7.75 16 14 C 0.05 1.91 5.08 71.98 0.37 2.27 16 15 O -0.29 -13.43 7.97 -68.19 -0.54 -13.98 16 16 C 0.15 5.69 6.71 22.91 0.15 5.85 16 17 C -0.24 -6.99 9.03 22.34 0.20 -6.79 16 18 C -0.04 -0.89 10.03 22.32 0.22 -0.67 16 19 C -0.18 -3.15 10.02 22.23 0.22 -2.92 16 20 C -0.03 -0.69 9.44 22.57 0.21 -0.48 16 21 C -0.24 -8.01 5.88 -20.07 -0.12 -8.13 16 22 C 0.36 13.30 7.22 27.93 0.20 13.50 16 23 C -0.19 -4.55 10.19 71.24 0.73 -3.83 16 24 O -0.47 -23.88 14.13 17.88 0.25 -23.62 16 25 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.03 1.50 8.04 -2.39 -0.02 1.48 16 31 H 0.05 2.05 8.00 -2.39 -0.02 2.03 16 32 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 33 H 0.06 2.56 8.12 -2.38 -0.02 2.54 16 34 H 0.07 3.98 5.54 -2.38 -0.01 3.97 16 35 H 0.06 2.10 7.59 -2.39 -0.02 2.08 16 36 H 0.06 2.26 7.66 -2.38 -0.02 2.24 16 37 H 0.13 3.57 6.30 -2.91 -0.02 3.55 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.17 2.23 5.93 -2.91 -0.02 2.21 16 41 H 0.12 1.74 5.60 -2.39 -0.01 1.72 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -80.64 352.33 6.42 -74.22 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.84 Total: 9.65 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.28 Total: -8.35 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -1.42 Total: -90.91 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.29 Total: -37.60 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.01 Total: 52.99 kcal Total: -80.64 6.42 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194968525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.328 kcal (2) G-P(sol) polarization free energy of solvation -80.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds