Wall clock time and date at job start Tue Mar 31 2020 07:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 O 1.42901 * 109.47098 * 119.99865 * 2 1 3 5 5 C 1.35896 * 117.00114 * 155.08631 * 4 2 1 6 6 C 1.38732 * 120.05436 * 5.47013 * 5 4 2 7 7 C 1.38148 * 119.94278 * 180.30164 * 6 5 4 8 8 C 1.38267 * 120.05631 * 359.42690 * 7 6 5 9 9 C 1.50697 * 119.94382 * 180.29874 * 8 7 6 10 10 C 1.53000 * 109.47164 * 270.29900 * 9 8 7 11 11 N 1.46502 * 109.46952 * 180.02562 * 10 9 8 12 12 C 1.34771 * 120.00025 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00179 * 179.97438 * 12 11 10 15 15 C 1.50700 * 109.46965 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00384 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99933 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47149 * 120.00239 * 19 17 15 22 22 H 1.48502 * 109.47311 * 240.00125 * 19 17 15 23 23 C 1.38263 * 120.10696 * 0.60124 * 8 7 6 24 24 C 1.38144 * 120.05940 * 359.67284 * 23 8 7 25 25 H 1.09000 * 109.47226 * 300.00152 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00208 * 1 2 3 27 27 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47226 * 239.99848 * 2 1 3 29 29 H 1.09000 * 109.47197 * 59.99830 * 3 2 1 30 30 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99702 * 3 2 1 32 32 H 1.08003 * 120.03227 * 0.03196 * 6 5 4 33 33 H 1.08001 * 119.97250 * 179.70365 * 7 6 5 34 34 H 1.09001 * 109.47398 * 30.30453 * 9 8 7 35 35 H 1.09010 * 109.46980 * 150.29746 * 9 8 7 36 36 H 1.09000 * 109.46938 * 299.99944 * 10 9 8 37 37 H 1.08998 * 109.47026 * 60.00262 * 10 9 8 38 38 H 0.97004 * 120.00293 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.46893 * 299.99209 * 14 12 11 40 40 H 1.08998 * 109.47247 * 59.99635 * 14 12 11 41 41 H 0.97004 * 120.00086 * 179.97438 * 18 17 15 42 42 H 1.08004 * 119.96989 * 179.70114 * 23 8 7 43 43 H 1.07998 * 120.02708 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2474 -1.2232 1.0985 6 6 4.0364 -1.0201 -0.0244 7 6 5.2952 -1.5850 -0.0940 8 6 5.7735 -2.3424 0.9592 9 6 7.1497 -2.9519 0.8834 10 6 7.0576 -4.3421 0.2512 11 7 8.3954 -4.9348 0.1780 12 6 8.5596 -6.1651 -0.3470 13 8 7.5998 -6.7818 -0.7587 14 6 9.9358 -6.7745 -0.4228 15 6 9.8451 -8.1439 -1.0455 16 1 8.8868 -8.5340 -1.3550 17 6 10.9856 -8.8987 -1.2200 18 7 12.1526 -8.4238 -0.8427 19 14 10.8734 -10.5957 -1.9925 20 1 9.4578 -10.8945 -2.3274 21 1 11.6926 -10.6312 -3.2306 22 1 11.3807 -11.6104 -1.0342 23 6 4.9889 -2.5467 2.0792 24 6 3.7272 -1.9887 2.1513 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.6652 -0.4245 -0.8453 33 1 5.9079 -1.4312 -0.9700 34 1 7.7948 -2.3180 0.2751 35 1 7.5655 -3.0361 1.8876 36 1 6.4126 -4.9759 0.8596 37 1 6.6419 -4.2577 -0.7529 38 1 9.1632 -4.4414 0.5069 39 1 10.5809 -6.1405 -1.0310 40 1 10.3515 -6.8591 0.5812 41 1 12.9549 -8.9550 -0.9651 42 1 5.3629 -3.1427 2.8986 43 1 3.1146 -2.1489 3.0262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258646751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:08 Heat of formation + Delta-G solvation = -73.768740 kcal Electronic energy + Delta-G solvation = -21806.674304 eV Core-core repulsion = 18430.319491 eV Total energy + Delta-G solvation = -3376.354813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56065 -38.78165 -38.10830 -34.90421 -33.57232 -32.89128 -31.73892 -31.13145 -29.13767 -27.84675 -27.33892 -24.16766 -23.54107 -22.69234 -21.66308 -20.72278 -19.56393 -18.55915 -16.40430 -16.35234 -15.91774 -15.81032 -15.63959 -15.03377 -15.01101 -14.55967 -14.33720 -14.25664 -13.73758 -13.58211 -13.22998 -13.07919 -12.78579 -12.73558 -12.56658 -12.31804 -12.07751 -11.75628 -11.58903 -11.55820 -11.37412 -11.03973 -10.92794 -10.80508 -10.71233 -10.57414 -9.92893 -9.22461 -9.16913 -8.63586 -8.46127 -8.36898 -8.22419 -6.03584 -4.02629 1.16969 1.23569 2.89169 3.35104 3.41971 3.50597 3.55001 3.77321 3.97268 4.32971 4.45427 4.51250 4.58113 4.65619 4.71261 4.88016 5.01514 5.08639 5.11758 5.17880 5.21889 5.27144 5.31591 5.34736 5.42461 5.51436 5.64109 5.67543 5.71014 5.83746 6.03779 6.06627 6.12207 6.18075 6.44550 6.51825 6.60203 7.08846 7.21353 7.22501 7.36235 7.98692 8.09572 8.48412 9.08935 9.28318 9.62476 11.08904 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037175 B = 0.002173 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.021221 B =12881.306129 C =13150.244668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.181 4.181 4 O -0.313 6.313 5 C 0.125 3.875 6 C -0.209 4.209 7 C -0.073 4.073 8 C -0.113 4.113 9 C -0.087 4.087 10 C 0.126 3.874 11 N -0.751 5.751 12 C 0.513 3.487 13 O -0.547 6.547 14 C 0.004 3.996 15 C -0.506 4.506 16 H 0.075 0.925 17 C 0.053 3.947 18 N -0.901 5.901 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.073 4.073 24 C -0.152 4.152 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 22.044 4.552 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.238 4.238 4 O -0.227 6.227 5 C 0.080 3.920 6 C -0.227 4.227 7 C -0.092 4.092 8 C -0.114 4.114 9 C -0.125 4.125 10 C 0.001 3.999 11 N -0.406 5.406 12 C 0.303 3.697 13 O -0.423 6.423 14 C -0.035 4.035 15 C -0.545 4.545 16 H 0.093 0.907 17 C -0.148 4.148 18 N -0.541 5.541 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.091 4.091 24 C -0.170 4.170 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.229 0.771 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.851 21.528 4.396 28.950 hybrid contribution 0.508 -0.471 -0.440 0.821 sum -18.342 21.057 3.956 28.204 Atomic orbital electron populations 1.21856 0.92461 1.03263 1.03014 1.22436 0.95417 0.92620 0.87562 1.22391 1.02285 0.95993 1.03117 1.86109 1.29490 1.68331 1.38767 1.18991 0.84551 0.93741 0.94685 1.21252 0.96368 1.06289 0.98825 1.20884 0.94877 0.95517 0.97879 1.19654 0.96723 1.00152 0.94859 1.20744 0.93566 0.95896 1.02299 1.21152 0.86046 0.92096 1.00560 1.46335 1.08702 1.19297 1.66233 1.22007 0.93864 0.79226 0.74608 1.90539 1.43192 1.61297 1.47249 1.19246 0.87540 0.97189 0.99536 1.21223 0.94552 0.99432 1.39244 0.90652 1.25019 0.95222 0.98694 0.95821 1.69971 0.98177 1.37845 1.48150 0.86377 0.78298 0.83687 0.78782 1.19485 1.21041 1.21029 1.20912 0.92820 0.97674 0.97736 1.20415 0.97040 1.00792 0.98773 0.91480 0.90518 0.91571 0.90805 0.91440 0.91729 0.91016 0.85432 0.85661 0.90449 0.90363 0.92134 0.92213 0.77106 0.93478 0.93462 0.93004 0.85184 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 2 C 0.08 0.56 2.85 -26.73 -0.08 0.48 16 3 C -0.18 -1.10 9.17 37.16 0.34 -0.76 16 4 O -0.31 -3.20 9.80 -19.41 -0.19 -3.39 16 5 C 0.13 1.35 6.60 -39.22 -0.26 1.10 16 6 C -0.21 -2.09 8.24 -39.43 -0.32 -2.41 16 7 C -0.07 -0.76 9.69 -39.60 -0.38 -1.15 16 8 C -0.11 -1.23 5.13 -104.60 -0.54 -1.77 16 9 C -0.09 -0.94 5.45 -27.88 -0.15 -1.09 16 10 C 0.13 1.86 5.66 -4.04 -0.02 1.84 16 11 N -0.75 -12.89 5.56 -60.29 -0.33 -13.22 16 12 C 0.51 11.89 7.82 -10.99 -0.09 11.80 16 13 O -0.55 -14.67 15.46 5.55 0.09 -14.58 16 14 C 0.00 0.11 5.46 -29.03 -0.16 -0.05 16 15 C -0.51 -14.91 8.92 -34.44 -0.31 -15.21 16 16 H 0.08 2.33 6.75 -52.49 -0.35 1.97 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 19 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 C -0.07 -0.77 9.69 -39.61 -0.38 -1.15 16 24 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 6.90 -51.93 -0.36 0.08 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 1.03 5.43 -52.48 -0.28 0.75 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.08 0.75 8.09 -51.92 -0.42 0.33 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 5.61 8.47 -40.82 -0.35 5.26 16 39 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -34.21 360.47 -8.50 -42.71 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.72 Total: 1.05 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.49 Total: -9.44 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.40 Total: -39.14 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.10 Total: -17.97 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.21 -8.50 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258646751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.063 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds