Wall clock time and date at job start Tue Mar 31 2020 07:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 O 1.42901 * 109.47098 * 119.99865 * 2 1 3 5 5 C 1.35896 * 117.00114 * 155.08631 * 4 2 1 6 6 C 1.38732 * 120.05436 * 5.47013 * 5 4 2 7 7 C 1.38148 * 119.94278 * 180.30164 * 6 5 4 8 8 C 1.38267 * 120.05631 * 359.42690 * 7 6 5 9 9 C 1.50697 * 119.94382 * 180.29874 * 8 7 6 10 10 C 1.53000 * 109.47164 * 270.29900 * 9 8 7 11 11 N 1.46502 * 109.46952 * 180.02562 * 10 9 8 12 12 C 1.34771 * 120.00025 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00179 * 179.97438 * 12 11 10 15 15 C 1.50700 * 109.46965 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00384 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99933 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47149 * 120.00239 * 19 17 15 22 22 H 1.48502 * 109.47311 * 240.00125 * 19 17 15 23 23 C 1.38263 * 120.10696 * 0.60124 * 8 7 6 24 24 C 1.38144 * 120.05940 * 359.67284 * 23 8 7 25 25 H 1.09000 * 109.47226 * 300.00152 * 1 2 3 26 26 H 1.09002 * 109.46912 * 60.00208 * 1 2 3 27 27 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47226 * 239.99848 * 2 1 3 29 29 H 1.09000 * 109.47197 * 59.99830 * 3 2 1 30 30 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99702 * 3 2 1 32 32 H 1.08003 * 120.03227 * 0.03196 * 6 5 4 33 33 H 1.08001 * 119.97250 * 179.70365 * 7 6 5 34 34 H 1.09001 * 109.47398 * 30.30453 * 9 8 7 35 35 H 1.09010 * 109.46980 * 150.29746 * 9 8 7 36 36 H 1.09000 * 109.46938 * 299.99944 * 10 9 8 37 37 H 1.08998 * 109.47026 * 60.00262 * 10 9 8 38 38 H 0.97004 * 120.00293 * 359.97438 * 11 10 9 39 39 H 1.09000 * 109.46893 * 299.99209 * 14 12 11 40 40 H 1.08998 * 109.47247 * 59.99635 * 14 12 11 41 41 H 0.97004 * 120.00086 * 179.97438 * 18 17 15 42 42 H 1.08004 * 119.96989 * 179.70114 * 23 8 7 43 43 H 1.07998 * 120.02708 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2474 -1.2232 1.0985 6 6 4.0364 -1.0201 -0.0244 7 6 5.2952 -1.5850 -0.0940 8 6 5.7735 -2.3424 0.9592 9 6 7.1497 -2.9519 0.8834 10 6 7.0576 -4.3421 0.2512 11 7 8.3954 -4.9348 0.1780 12 6 8.5596 -6.1651 -0.3470 13 8 7.5998 -6.7818 -0.7587 14 6 9.9358 -6.7745 -0.4228 15 6 9.8451 -8.1439 -1.0455 16 1 8.8868 -8.5340 -1.3550 17 6 10.9856 -8.8987 -1.2200 18 7 12.1526 -8.4238 -0.8427 19 14 10.8734 -10.5957 -1.9925 20 1 9.4578 -10.8945 -2.3274 21 1 11.6926 -10.6312 -3.2306 22 1 11.3807 -11.6104 -1.0342 23 6 4.9889 -2.5467 2.0792 24 6 3.7272 -1.9887 2.1513 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.6652 -0.4245 -0.8453 33 1 5.9079 -1.4312 -0.9700 34 1 7.7948 -2.3180 0.2751 35 1 7.5655 -3.0361 1.8876 36 1 6.4126 -4.9759 0.8596 37 1 6.6419 -4.2577 -0.7529 38 1 9.1632 -4.4414 0.5069 39 1 10.5809 -6.1405 -1.0310 40 1 10.3515 -6.8591 0.5812 41 1 12.9549 -8.9550 -0.9651 42 1 5.3629 -3.1427 2.8986 43 1 3.1146 -2.1489 3.0262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258646751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:08 Heat of formation + Delta-G solvation = -94.926393 kcal Electronic energy + Delta-G solvation = -21807.591769 eV Core-core repulsion = 18430.319491 eV Total energy + Delta-G solvation = -3377.272278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29945 -40.41829 -39.01616 -36.23447 -35.08461 -34.29269 -32.86985 -31.89336 -31.01192 -28.76104 -28.10575 -25.84633 -24.40678 -23.96382 -22.48410 -21.59979 -21.15148 -19.26063 -18.52842 -17.65519 -17.15052 -16.99652 -16.44423 -16.35568 -16.25926 -16.05849 -15.50488 -15.12107 -14.77581 -14.57202 -14.33051 -14.20483 -14.15936 -13.68097 -13.37313 -13.25666 -13.18357 -13.00103 -12.81035 -12.60372 -12.53924 -12.36667 -12.30393 -12.04930 -12.00999 -11.60939 -11.49135 -11.42435 -10.62390 -10.53255 -9.99663 -9.91807 -9.03559 -8.24900 -6.31725 0.39043 0.42311 1.39786 1.40484 1.55597 1.90880 2.24265 2.35108 2.52621 2.80887 3.10262 3.78517 3.85091 3.93020 3.98483 4.00058 4.12548 4.14532 4.19435 4.40330 4.46859 4.47272 4.61883 4.66138 4.68622 4.80115 4.85090 4.92710 4.95301 5.07669 5.12090 5.15747 5.18696 5.24396 5.28760 5.34534 5.41035 5.59824 5.70018 5.75185 5.85074 6.07521 6.49578 6.73935 6.86571 7.34629 7.54398 8.87337 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037175 B = 0.002173 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.021221 B =12881.306129 C =13150.244668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 C -0.176 4.176 4 O -0.327 6.327 5 C 0.116 3.884 6 C -0.212 4.212 7 C -0.080 4.080 8 C -0.126 4.126 9 C -0.072 4.072 10 C 0.127 3.873 11 N -0.726 5.726 12 C 0.516 3.484 13 O -0.589 6.589 14 C 0.007 3.993 15 C -0.536 4.536 16 H 0.053 0.947 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.078 4.078 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.267 0.733 42 H 0.143 0.857 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.313 23.028 4.362 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.234 4.234 4 O -0.242 6.242 5 C 0.071 3.929 6 C -0.231 4.231 7 C -0.098 4.098 8 C -0.127 4.127 9 C -0.110 4.110 10 C 0.004 3.996 11 N -0.379 5.379 12 C 0.305 3.695 13 O -0.470 6.470 14 C -0.032 4.032 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.789 3.211 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.096 4.096 24 C -0.185 4.185 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.250 0.750 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.160 0.840 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.971 22.575 4.234 29.790 hybrid contribution 0.497 -0.690 -0.362 0.924 sum -18.474 21.884 3.872 28.900 Atomic orbital electron populations 1.21885 0.91303 1.03147 1.04046 1.22714 0.96380 0.93089 0.86749 1.22366 1.01765 0.95262 1.03973 1.86098 1.29264 1.68556 1.40310 1.19197 0.84968 0.93780 0.94997 1.21451 0.96217 1.06296 0.99105 1.21127 0.95201 0.95283 0.98206 1.19715 0.96844 1.00835 0.95321 1.20629 0.94114 0.93187 1.03052 1.21280 0.83981 0.94136 1.00241 1.46009 1.10724 1.17328 1.63879 1.21498 0.92255 0.80768 0.74981 1.90517 1.43906 1.62966 1.49566 1.19092 0.89237 0.96069 0.98840 1.21410 0.93968 1.01543 1.40555 0.92882 1.25794 0.94785 1.02392 0.96019 1.70033 0.98694 1.39262 1.48383 0.85404 0.77991 0.79205 0.78474 1.20116 1.19695 1.19712 1.21115 0.92770 0.97603 0.98146 1.20628 0.97420 1.01136 0.99287 0.91546 0.88381 0.92261 0.90583 0.91739 0.92474 0.89001 0.83840 0.84354 0.88799 0.88774 0.93301 0.93300 0.75010 0.93771 0.93787 0.92389 0.83964 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 2 C 0.07 0.90 2.85 30.60 0.09 0.98 16 3 C -0.18 -1.89 9.17 71.98 0.66 -1.23 16 4 O -0.33 -6.54 9.80 -92.38 -0.91 -7.44 16 5 C 0.12 2.43 6.60 22.51 0.15 2.58 16 6 C -0.21 -4.01 8.24 22.37 0.18 -3.82 16 7 C -0.08 -1.55 9.69 22.26 0.22 -1.33 16 8 C -0.13 -2.56 5.13 -19.85 -0.10 -2.66 16 9 C -0.07 -1.39 5.45 29.85 0.16 -1.23 16 10 C 0.13 3.63 5.66 86.38 0.49 4.12 16 11 N -0.73 -24.15 5.56 -463.06 -2.57 -26.72 16 12 C 0.52 24.04 7.82 87.66 0.69 24.73 16 13 O -0.59 -32.26 15.46 -3.05 -0.05 -32.30 16 14 C 0.01 0.37 5.46 29.10 0.16 0.53 16 15 C -0.54 -32.12 8.92 25.60 0.23 -31.89 16 16 H 0.05 3.36 6.75 -2.91 -0.02 3.34 16 17 C 0.01 0.50 5.46 84.65 0.46 0.96 16 18 N -0.92 -54.26 13.29 21.45 0.28 -53.98 16 19 Si 0.96 45.82 29.54 68.60 2.03 47.84 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.08 -1.56 9.69 22.25 0.22 -1.35 16 24 C -0.17 -3.44 9.99 22.36 0.22 -3.22 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.98 6.32 -2.39 -0.02 0.96 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.70 6.90 -2.39 -0.02 0.68 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.14 2.12 5.43 -2.91 -0.02 2.11 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.09 1.55 8.09 -2.38 -0.02 1.53 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 10.93 8.47 -92.70 -0.79 10.14 16 39 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -73.65 360.47 3.51 -70.14 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.21 Total: 16.10 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.51 Total: -13.63 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.29 Total: -80.70 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.95 Total: -39.75 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.65 3.51 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258646751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.789 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds