Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47258 * 2 1 4 4 H 1.08998 * 109.47313 * 54.85549 * 3 2 1 5 5 O 1.42904 * 109.47061 * 294.85567 * 3 2 1 6 6 C 1.42899 * 113.99604 * 149.99815 * 5 3 2 7 7 C 1.50701 * 109.47337 * 174.85746 * 3 2 1 8 8 O 1.21291 * 120.00043 * 101.20126 * 7 3 2 9 9 N 1.34778 * 119.99849 * 281.20560 * 7 3 2 10 10 C 1.46506 * 119.99897 * 3.60728 * 9 7 3 11 11 C 1.50690 * 109.47035 * 273.02375 * 10 9 7 12 12 H 1.07997 * 120.00471 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00173 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99921 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47062 * 60.00635 * 15 13 11 17 17 H 1.48505 * 109.46829 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47036 * 300.00453 * 15 13 11 19 19 C 1.39923 * 119.99879 * 183.88588 * 9 7 3 20 20 C 1.38873 * 120.07112 * 172.24431 * 19 9 7 21 21 C 1.38109 * 119.92936 * 179.74231 * 20 19 9 22 22 C 1.38287 * 120.06808 * 0.52779 * 21 20 19 23 23 C 1.50701 * 119.92472 * 179.74334 * 22 21 20 24 24 C 1.38278 * 120.14417 * 359.72754 * 22 21 20 25 25 C 1.38111 * 120.06896 * 0.02562 * 24 22 21 26 26 H 1.09009 * 109.46957 * 60.00035 * 1 2 3 27 27 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47150 * 300.00365 * 1 2 3 29 29 H 1.08999 * 109.47173 * 240.00423 * 2 1 3 30 30 H 1.09000 * 109.47106 * 120.00124 * 2 1 3 31 31 H 1.09000 * 109.47288 * 299.99411 * 6 5 3 32 32 H 1.08991 * 109.47237 * 60.00653 * 6 5 3 33 33 H 1.09000 * 109.46971 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46786 * 33.02476 * 10 9 7 35 35 H 1.09006 * 109.46625 * 153.01996 * 10 9 7 36 36 H 0.96997 * 119.99972 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.03272 * 359.97438 * 20 19 9 38 38 H 1.08002 * 119.96774 * 180.24816 * 21 20 19 39 39 H 1.09002 * 109.47407 * 269.97516 * 23 22 21 40 40 H 1.08998 * 109.47131 * 29.98181 * 23 22 21 41 41 H 1.09005 * 109.46577 * 149.98028 * 23 22 21 42 42 H 1.08000 * 119.96586 * 179.97438 * 24 22 21 43 43 H 1.07994 * 120.03673 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9823 0.8403 5 8 1.6649 2.0804 -1.2225 6 6 1.4585 3.4894 -1.1033 7 6 3.5416 1.4445 0.1274 8 8 4.2332 1.6184 -0.8537 9 7 4.1160 1.2528 1.3314 10 6 3.2841 0.9641 2.5023 11 6 2.8351 2.2580 3.1308 12 1 3.1387 3.2011 2.7010 13 6 2.0359 2.2378 4.2542 14 7 1.6657 1.0893 4.7774 15 14 1.4799 3.8417 5.0338 16 1 0.6928 4.6248 4.0476 17 1 0.6365 3.5490 6.2206 18 1 2.6688 4.6264 5.4534 19 6 5.5065 1.3354 1.4643 20 6 6.0884 1.2990 2.7247 21 6 7.4615 1.3753 2.8522 22 6 8.2560 1.4989 1.7271 23 6 9.7535 1.5877 1.8703 24 6 7.6793 1.5407 0.4710 25 6 6.3072 1.4597 0.3365 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6627 3.6805 -0.3835 32 1 2.3786 3.9638 -0.7623 33 1 1.1773 3.8987 -2.0736 34 1 2.4116 0.3876 2.1948 35 1 3.8624 0.3898 3.2262 36 1 1.1032 1.0752 5.5674 37 1 5.4681 1.2073 3.6041 38 1 7.9150 1.3431 3.8319 39 1 10.0477 2.6326 1.9695 40 1 10.0671 1.0362 2.7566 41 1 10.2289 1.1586 0.9882 42 1 8.3025 1.6376 -0.4057 43 1 5.8574 1.4920 -0.6448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263880099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = -50.646541 kcal Electronic energy + Delta-G solvation = -24246.270273 eV Core-core repulsion = 20870.918114 eV Total energy + Delta-G solvation = -3375.352159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39327 -38.46076 -36.97469 -35.46652 -33.30118 -32.84712 -31.29576 -30.33792 -27.79221 -27.59636 -26.25902 -25.02549 -23.53403 -21.97457 -21.71008 -20.72090 -19.17840 -17.15637 -16.89080 -16.36275 -15.98942 -15.16174 -15.10210 -14.71750 -14.54209 -14.12476 -13.82123 -13.62548 -13.38382 -13.32179 -13.00808 -12.83873 -12.53002 -12.11552 -11.92002 -11.87609 -11.72250 -11.52824 -11.25390 -11.18956 -11.08098 -10.96079 -10.62575 -10.48246 -10.37553 -10.32404 -10.08676 -9.81166 -9.10797 -8.72851 -8.37536 -8.33523 -7.12252 -6.33203 -4.42947 1.82626 2.01454 3.14099 3.14994 3.20835 3.25087 3.51748 4.15149 4.22470 4.43898 4.94200 5.00506 5.29695 5.31556 5.35720 5.45977 5.59685 5.63726 5.64371 5.69451 5.75472 5.81234 5.92897 5.96195 5.98196 6.11414 6.12172 6.18368 6.26299 6.29532 6.38889 6.53179 6.57676 6.77387 6.91672 6.95355 7.04715 7.16394 7.29202 7.40273 7.58520 7.82259 7.84461 8.07999 8.61228 8.77464 9.25324 10.72423 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.006940 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.975845 B = 4033.809827 C = 5671.134189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C 0.076 3.924 4 H 0.110 0.890 5 O -0.363 6.363 6 C 0.031 3.969 7 C 0.496 3.504 8 O -0.531 6.531 9 N -0.533 5.533 10 C 0.220 3.780 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.071 3.929 14 N -0.885 5.885 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.164 3.836 20 C -0.142 4.142 21 C -0.103 4.103 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.107 4.107 25 C -0.177 4.177 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.269 0.731 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.114 0.886 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -0.303 -5.372 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.128 0.872 5 O -0.280 6.280 6 C -0.066 4.066 7 C 0.286 3.714 8 O -0.410 6.410 9 N -0.253 5.253 10 C 0.101 3.899 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.133 4.133 14 N -0.522 5.522 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.199 1.199 19 C 0.068 3.932 20 C -0.163 4.163 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.160 4.160 24 C -0.126 4.126 25 C -0.197 4.197 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.644 -0.415 -5.900 6.947 hybrid contribution -0.256 1.149 1.081 1.598 sum 3.388 0.733 -4.819 5.936 Atomic orbital electron populations 1.21677 0.94559 1.01591 1.02379 1.21610 0.97319 0.93148 1.03242 1.22192 0.90256 0.96779 0.89265 0.87248 1.87897 1.88268 1.20548 1.31295 1.22799 0.99982 0.81825 1.02004 1.21510 0.91772 0.75952 0.82182 1.90248 1.63062 1.49473 1.38205 1.46075 1.04832 1.63719 1.10719 1.19883 0.90338 0.97780 0.81891 1.21333 1.32295 0.92385 1.12380 0.92048 1.24900 0.95426 0.96702 0.96295 1.69896 1.35309 1.24738 1.22285 0.86571 0.78911 0.83297 0.78902 1.19981 1.20917 1.19940 1.18110 0.82957 0.97993 0.94100 1.21097 0.94982 1.03480 0.96703 1.20724 0.92923 1.00928 0.97635 1.19780 0.95441 1.04480 0.93605 1.20660 0.92187 1.01444 1.01757 1.20897 0.94659 1.00854 0.96148 1.22736 0.93240 1.02254 1.01439 0.92310 0.92664 0.92101 0.91240 0.89327 0.93726 0.94077 0.89822 0.92911 0.93387 0.92157 0.84438 0.86555 0.92078 0.92224 0.92297 0.86844 0.80591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.81 37.16 0.36 -1.74 16 2 C -0.12 -1.93 5.31 -26.73 -0.14 -2.07 16 3 C 0.08 1.44 1.70 -27.88 -0.05 1.39 16 4 H 0.11 2.19 6.34 -51.93 -0.33 1.86 16 5 O -0.36 -6.62 9.49 -54.40 -0.52 -7.13 16 6 C 0.03 0.47 10.81 101.05 1.09 1.57 16 7 C 0.50 10.52 6.83 -10.98 -0.08 10.45 16 8 O -0.53 -11.95 13.01 -13.62 -0.18 -12.13 16 9 N -0.53 -11.55 2.69 -114.73 -0.31 -11.86 16 10 C 0.22 5.00 4.15 -5.20 -0.02 4.98 16 11 C -0.55 -13.47 8.44 -34.44 -0.29 -13.76 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -22.89 13.29 55.43 0.74 -22.16 16 15 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 C 0.16 3.48 6.49 -83.69 -0.54 2.93 16 20 C -0.14 -2.83 9.15 -39.39 -0.36 -3.19 16 21 C -0.10 -1.77 9.69 -39.61 -0.38 -2.16 16 22 C -0.13 -2.12 5.88 -104.59 -0.62 -2.74 16 23 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 24 C -0.11 -1.84 9.69 -39.61 -0.38 -2.22 16 25 C -0.18 -3.54 9.04 -39.39 -0.36 -3.90 16 26 H 0.06 0.82 7.83 -51.92 -0.41 0.41 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.53 5.94 -51.93 -0.31 1.22 16 31 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.19 4.70 -51.93 -0.24 0.95 16 35 H 0.05 1.15 6.39 -51.93 -0.33 0.82 16 36 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.14 2.88 6.31 -52.49 -0.33 2.54 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.18 3.74 4.55 -56.12 -0.26 3.49 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -27.50 349.22 -7.92 -35.42 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.39 Total: 7.60 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.50 Total: -9.68 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.43 Total: -34.01 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.69 Total: -19.26 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.50 -7.92 -35.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263880099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.225 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds