Wall clock time and date at job start Tue Mar 31 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47258 * 2 1 4 4 H 1.08998 * 109.47313 * 54.85549 * 3 2 1 5 5 O 1.42904 * 109.47061 * 294.85567 * 3 2 1 6 6 C 1.42899 * 113.99604 * 149.99815 * 5 3 2 7 7 C 1.50701 * 109.47337 * 174.85746 * 3 2 1 8 8 O 1.21291 * 120.00043 * 101.20126 * 7 3 2 9 9 N 1.34778 * 119.99849 * 281.20560 * 7 3 2 10 10 C 1.46506 * 119.99897 * 3.60728 * 9 7 3 11 11 C 1.50690 * 109.47035 * 273.02375 * 10 9 7 12 12 H 1.07997 * 120.00471 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00173 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99921 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47062 * 60.00635 * 15 13 11 17 17 H 1.48505 * 109.46829 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47036 * 300.00453 * 15 13 11 19 19 C 1.39923 * 119.99879 * 183.88588 * 9 7 3 20 20 C 1.38873 * 120.07112 * 172.24431 * 19 9 7 21 21 C 1.38109 * 119.92936 * 179.74231 * 20 19 9 22 22 C 1.38287 * 120.06808 * 0.52779 * 21 20 19 23 23 C 1.50701 * 119.92472 * 179.74334 * 22 21 20 24 24 C 1.38278 * 120.14417 * 359.72754 * 22 21 20 25 25 C 1.38111 * 120.06896 * 0.02562 * 24 22 21 26 26 H 1.09009 * 109.46957 * 60.00035 * 1 2 3 27 27 H 1.08996 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47150 * 300.00365 * 1 2 3 29 29 H 1.08999 * 109.47173 * 240.00423 * 2 1 3 30 30 H 1.09000 * 109.47106 * 120.00124 * 2 1 3 31 31 H 1.09000 * 109.47288 * 299.99411 * 6 5 3 32 32 H 1.08991 * 109.47237 * 60.00653 * 6 5 3 33 33 H 1.09000 * 109.46971 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46786 * 33.02476 * 10 9 7 35 35 H 1.09006 * 109.46625 * 153.01996 * 10 9 7 36 36 H 0.96997 * 119.99972 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.03272 * 359.97438 * 20 19 9 38 38 H 1.08002 * 119.96774 * 180.24816 * 21 20 19 39 39 H 1.09002 * 109.47407 * 269.97516 * 23 22 21 40 40 H 1.08998 * 109.47131 * 29.98181 * 23 22 21 41 41 H 1.09005 * 109.46577 * 149.98028 * 23 22 21 42 42 H 1.08000 * 119.96586 * 179.97438 * 24 22 21 43 43 H 1.07994 * 120.03673 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9823 0.8403 5 8 1.6649 2.0804 -1.2225 6 6 1.4585 3.4894 -1.1033 7 6 3.5416 1.4445 0.1274 8 8 4.2332 1.6184 -0.8537 9 7 4.1160 1.2528 1.3314 10 6 3.2841 0.9641 2.5023 11 6 2.8351 2.2580 3.1308 12 1 3.1387 3.2011 2.7010 13 6 2.0359 2.2378 4.2542 14 7 1.6657 1.0893 4.7774 15 14 1.4799 3.8417 5.0338 16 1 0.6928 4.6248 4.0476 17 1 0.6365 3.5490 6.2206 18 1 2.6688 4.6264 5.4534 19 6 5.5065 1.3354 1.4643 20 6 6.0884 1.2990 2.7247 21 6 7.4615 1.3753 2.8522 22 6 8.2560 1.4989 1.7271 23 6 9.7535 1.5877 1.8703 24 6 7.6793 1.5407 0.4710 25 6 6.3072 1.4597 0.3365 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.6627 3.6805 -0.3835 32 1 2.3786 3.9638 -0.7623 33 1 1.1773 3.8987 -2.0736 34 1 2.4116 0.3876 2.1948 35 1 3.8624 0.3898 3.2262 36 1 1.1032 1.0752 5.5674 37 1 5.4681 1.2073 3.6041 38 1 7.9150 1.3431 3.8319 39 1 10.0477 2.6326 1.9695 40 1 10.0671 1.0362 2.7566 41 1 10.2289 1.1586 0.9882 42 1 8.3025 1.6376 -0.4057 43 1 5.8574 1.4920 -0.6448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263880099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:42 Heat of formation + Delta-G solvation = -63.736886 kcal Electronic energy + Delta-G solvation = -24246.837913 eV Core-core repulsion = 20870.918114 eV Total energy + Delta-G solvation = -3375.919799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99319 -39.90058 -38.43803 -37.15933 -34.78252 -34.57493 -32.67442 -31.79864 -29.43036 -29.09977 -27.57739 -26.36606 -25.33018 -23.42477 -23.14027 -22.16476 -20.74135 -18.79904 -18.70003 -18.05039 -17.42387 -16.64737 -16.56896 -16.46808 -16.01654 -15.67778 -15.20735 -15.01832 -14.75790 -14.50577 -14.46501 -14.31694 -14.24300 -13.47173 -13.37902 -13.35591 -12.98565 -12.94278 -12.84086 -12.69989 -12.50959 -12.44345 -12.23061 -12.01202 -11.91166 -11.82572 -11.71728 -11.25222 -10.75540 -10.65562 -9.96457 -9.80328 -8.69774 -8.24386 -6.42096 0.35014 0.54848 1.38853 1.40794 1.47156 1.56573 1.94242 2.36013 2.76327 2.96457 3.03388 3.39259 3.91206 4.01717 4.06923 4.10363 4.26183 4.34506 4.42728 4.45432 4.46080 4.52395 4.58634 4.61049 4.73493 4.78301 4.90042 4.92621 4.93002 5.00632 5.12166 5.16853 5.19288 5.24680 5.39655 5.43630 5.53711 5.61627 5.73632 5.81807 5.92057 5.98599 6.30521 6.38658 6.68657 7.09598 7.29318 8.78607 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.006940 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.975845 B = 4033.809827 C = 5671.134189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.083 3.917 4 H 0.095 0.905 5 O -0.370 6.370 6 C 0.025 3.975 7 C 0.488 3.512 8 O -0.549 6.549 9 N -0.537 5.537 10 C 0.235 3.765 11 C -0.550 4.550 12 H 0.046 0.954 13 C 0.035 3.965 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.130 3.870 20 C -0.159 4.159 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.106 4.106 25 C -0.193 4.193 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.271 0.729 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.142 0.858 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 0.216 -5.515 7.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.022 3.978 4 H 0.113 0.887 5 O -0.288 6.288 6 C -0.071 4.071 7 C 0.279 3.721 8 O -0.430 6.430 9 N -0.258 5.258 10 C 0.116 3.884 11 C -0.589 4.589 12 H 0.065 0.935 13 C -0.167 4.167 14 N -0.547 5.547 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.202 1.202 19 C 0.035 3.965 20 C -0.179 4.179 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.158 4.158 24 C -0.125 4.125 25 C -0.212 4.212 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.677 0.106 -6.046 7.644 hybrid contribution -0.442 0.998 1.102 1.552 sum 4.235 1.104 -4.943 6.603 Atomic orbital electron populations 1.21630 0.92579 1.02988 1.02227 1.21613 0.98974 0.91621 1.02890 1.22135 0.88613 0.97963 0.89102 0.88730 1.87880 1.88072 1.21954 1.30883 1.23004 0.99493 0.80410 1.04170 1.21982 0.92783 0.75513 0.81818 1.90239 1.63730 1.50485 1.38548 1.46039 1.05307 1.63982 1.10425 1.19579 0.90072 0.96836 0.81945 1.21387 1.32404 0.92360 1.12704 0.93529 1.25503 0.95387 0.99290 0.96553 1.69969 1.35806 1.26213 1.22687 0.85732 0.78406 0.80057 0.78336 1.19309 1.20194 1.20241 1.18422 0.82846 1.00134 0.95137 1.21086 0.96328 1.04953 0.95552 1.21076 0.91767 0.99697 0.99563 1.20258 0.97819 1.01663 0.92511 1.20740 0.88732 1.02847 1.03475 1.21242 0.93652 0.99613 0.97955 1.22680 0.94660 1.03510 1.00364 0.91519 0.90522 0.93086 0.90732 0.90421 0.92658 0.95852 0.86673 0.92906 0.95084 0.91929 0.86396 0.83842 0.90618 0.90581 0.90549 0.84002 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.81 71.98 0.71 -3.17 16 2 C -0.11 -3.83 5.31 30.59 0.16 -3.67 16 3 C 0.08 3.22 1.70 29.85 0.05 3.27 16 4 H 0.10 3.93 6.34 -2.39 -0.02 3.92 16 5 O -0.37 -13.52 9.49 -130.65 -1.24 -14.76 16 6 C 0.03 0.78 10.81 113.37 1.23 2.00 16 7 C 0.49 21.55 6.83 87.66 0.60 22.15 16 8 O -0.55 -25.62 13.01 15.26 0.20 -25.42 16 9 N -0.54 -24.38 2.69 -635.29 -1.71 -26.09 16 10 C 0.24 11.21 4.15 85.63 0.36 11.57 16 11 C -0.55 -28.02 8.44 25.60 0.22 -27.81 16 12 H 0.05 2.47 7.81 -2.91 -0.02 2.45 16 13 C 0.03 1.76 5.46 84.66 0.46 2.22 16 14 N -0.91 -47.61 13.29 21.45 0.28 -47.32 16 15 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 19 C 0.13 5.68 6.49 38.15 0.25 5.93 16 20 C -0.16 -6.48 9.15 22.39 0.20 -6.27 16 21 C -0.10 -3.39 9.69 22.25 0.22 -3.17 16 22 C -0.12 -3.61 5.88 -19.84 -0.12 -3.73 16 23 C -0.10 -2.05 10.01 71.24 0.71 -1.33 16 24 C -0.11 -3.49 9.69 22.25 0.22 -3.27 16 25 C -0.19 -7.82 9.04 22.39 0.20 -7.62 16 26 H 0.07 1.77 7.83 -2.38 -0.02 1.76 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 2.78 5.94 -2.39 -0.01 2.76 16 31 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.05 2.50 4.70 -2.39 -0.01 2.49 16 35 H 0.03 1.58 6.39 -2.38 -0.02 1.56 16 36 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 37 H 0.12 5.20 6.31 -2.91 -0.02 5.18 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 42 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.16 7.07 4.55 -60.38 -0.27 6.80 16 Total: -1.00 -60.11 349.22 5.76 -54.35 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.74 Total: 29.72 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.46 Total: -12.92 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.42 Total: -73.41 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.04 Total: -40.18 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -60.11 5.76 -54.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263880099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.388 kcal (2) G-P(sol) polarization free energy of solvation -60.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds