Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 N 1.46495 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00023 * 269.99935 * 4 3 2 6 6 C 1.52996 * 109.47467 * 270.00070 * 5 4 3 7 7 C 1.34775 * 120.00172 * 89.99959 * 4 3 2 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 4 3 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 4 3 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 4 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09003 * 109.47705 * 299.99942 * 1 2 3 26 26 H 1.09005 * 109.47256 * 60.00318 * 1 2 3 27 27 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47109 * 239.99742 * 2 1 3 29 29 H 1.08999 * 109.46852 * 119.99730 * 2 1 3 30 30 H 1.09002 * 109.47115 * 60.00148 * 3 2 1 31 31 H 1.08991 * 109.47058 * 299.99802 * 3 2 1 32 32 H 1.09003 * 109.47210 * 30.00112 * 5 4 3 33 33 H 1.09004 * 109.47392 * 150.00165 * 5 4 3 34 34 H 1.08995 * 109.47650 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.46940 * 300.00207 * 6 5 4 36 36 H 1.09004 * 109.46737 * 59.99694 * 6 5 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 9 7 4 38 38 H 1.08996 * 109.47266 * 300.00146 * 9 7 4 39 39 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 40 40 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 41 41 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 43 43 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2368 1.4428 1.2696 6 6 4.4917 2.8853 1.7113 7 6 4.1793 1.4424 -1.1663 8 8 3.5733 1.4427 -2.2169 9 6 5.6863 1.4430 -1.1657 10 6 6.1892 1.4433 -2.5862 11 6 6.4190 2.6420 -3.2367 12 6 6.8804 2.6457 -4.5383 13 6 7.1130 1.4438 -5.1944 14 8 7.5670 1.4442 -6.4737 15 6 7.8810 2.6400 -7.0115 16 1 7.6904 3.5477 -6.4583 17 6 8.4487 2.7044 -8.2749 18 7 8.6814 1.5986 -8.9487 19 14 8.8845 4.3611 -9.0197 20 1 9.8686 5.0521 -8.1485 21 1 9.4739 4.1583 -10.3676 22 1 7.6577 5.1900 -9.1350 23 6 6.8753 0.2418 -4.5407 24 6 6.4193 0.2449 -3.2371 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.6475 0.9291 2.0291 33 1 5.1894 0.9290 1.1398 34 1 5.0366 2.8855 2.6552 35 1 5.0811 3.3991 0.9518 36 1 3.5391 3.3991 1.8411 37 1 6.0497 0.5533 -0.6514 38 1 6.0491 2.3333 -0.6520 39 1 6.2383 3.5762 -2.7258 40 1 7.0600 3.5820 -5.0455 41 1 9.0782 1.6437 -9.8326 42 1 7.0510 -0.6943 -5.0497 43 1 6.2385 -0.6895 -2.7267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264625145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -50.638606 kcal Electronic energy + Delta-G solvation = -22762.620853 eV Core-core repulsion = 19387.269037 eV Total energy + Delta-G solvation = -3375.351815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07900 -38.81524 -36.73676 -36.03217 -34.06962 -32.37824 -31.20698 -30.45939 -30.08296 -27.37612 -25.75682 -24.86703 -23.54690 -21.97482 -21.90234 -20.58531 -18.88229 -17.91539 -17.12466 -16.91732 -16.41939 -15.38050 -14.91449 -14.61174 -14.50678 -14.23937 -14.08711 -13.82910 -13.57762 -13.43739 -13.34095 -12.85445 -12.63725 -12.56315 -12.40151 -12.21968 -11.86196 -11.77691 -11.57085 -11.50071 -11.25912 -11.19949 -10.87735 -10.76319 -10.66452 -10.57781 -10.38923 -9.58742 -9.26948 -8.76372 -8.74160 -8.08092 -7.09410 -6.39312 -3.97835 2.31526 2.33017 2.80862 3.00339 3.16840 3.18476 3.20554 4.01689 4.47666 4.62371 4.73374 4.76807 4.92643 4.98862 5.06270 5.11523 5.16562 5.20116 5.31400 5.36020 5.37991 5.42850 5.53060 5.55521 5.61841 5.69179 5.79835 5.81610 5.91314 5.93172 5.97132 6.06236 6.28183 6.48616 6.50930 6.77062 6.98286 7.11541 7.30200 7.38627 7.44043 7.51427 7.90911 8.06085 8.35488 9.06330 9.77691 10.78912 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002999 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.410426 B = 9335.389077 C = 9611.718545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.116 3.884 4 N -0.624 5.624 5 C 0.105 3.895 6 C -0.173 4.173 7 C 0.511 3.489 8 O -0.518 6.518 9 C -0.079 4.079 10 C -0.169 4.169 11 C -0.057 4.057 12 C -0.232 4.232 13 C 0.157 3.843 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.191 4.191 24 C -0.060 4.060 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 0.114 22.455 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.359 5.359 5 C -0.018 4.018 6 C -0.232 4.232 7 C 0.299 3.701 8 O -0.392 6.392 9 C -0.119 4.119 10 C -0.171 4.171 11 C -0.075 4.075 12 C -0.251 4.251 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.211 4.211 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.704 -0.127 21.456 23.549 hybrid contribution 0.150 0.899 -0.214 0.936 sum -9.554 0.772 21.243 23.305 Atomic orbital electron populations 1.21690 0.95289 1.01848 1.01840 1.21879 0.96041 0.97434 1.02439 1.21439 0.79669 0.96800 1.02793 1.48132 1.06325 1.75275 1.06167 1.21535 0.97418 0.97274 0.85565 1.22234 1.02201 0.97024 1.01710 1.21062 0.90654 0.75488 0.82893 1.90735 1.70201 1.47454 1.30823 1.20464 0.90931 1.03568 0.96897 1.18664 1.09889 0.93708 0.94798 1.20492 0.96763 0.96131 0.94112 1.21098 1.09650 0.98386 0.96011 1.19379 0.91759 0.93263 0.85297 1.83975 1.71034 1.32885 1.20319 1.21280 1.41678 0.83152 1.00632 0.89163 1.25278 0.96360 0.99226 0.95662 1.70030 1.40373 1.27015 1.12533 0.85791 0.79068 0.80249 0.78370 1.19536 1.20306 1.19518 1.20148 1.09633 0.96200 0.95088 1.20389 0.97403 0.96286 0.93732 0.92837 0.92405 0.92567 0.91399 0.92182 0.91106 0.89982 0.90608 0.90076 0.91496 0.92078 0.92446 0.89146 0.89136 0.87929 0.85622 0.92031 0.86574 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.14 -1.30 6.26 -26.73 -0.17 -1.46 16 3 C 0.12 1.15 5.41 -4.04 -0.02 1.13 16 4 N -0.62 -6.67 2.47 -173.69 -0.43 -7.10 16 5 C 0.11 0.75 5.93 -4.04 -0.02 0.72 16 6 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 7 C 0.51 7.44 7.67 -10.98 -0.08 7.35 16 8 O -0.52 -10.07 15.61 5.55 0.09 -9.99 16 9 C -0.08 -1.04 4.38 -29.04 -0.13 -1.17 16 10 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 11 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 12 C -0.23 -5.34 9.17 -39.39 -0.36 -5.71 16 13 C 0.16 3.99 6.65 -39.11 -0.26 3.73 16 14 O -0.18 -5.30 9.76 0.05 0.00 -5.29 16 15 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 24 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 8.07 -51.93 -0.42 0.12 16 31 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 32 H 0.08 0.41 8.07 -51.93 -0.42 0.00 16 33 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.47 7.22 -51.93 -0.37 0.09 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 38 H 0.09 1.00 7.13 -51.93 -0.37 0.63 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -34.34 358.75 -7.54 -41.88 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.62 Total: 2.46 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -1.72 Total: -18.17 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.33 Total: -32.30 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.34 -7.54 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264625145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.760 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds