Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 N 1.46495 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.46499 * 120.00023 * 269.99935 * 4 3 2 6 6 C 1.52996 * 109.47467 * 270.00070 * 5 4 3 7 7 C 1.34775 * 120.00172 * 89.99959 * 4 3 2 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 4 3 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 4 3 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 4 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09003 * 109.47705 * 299.99942 * 1 2 3 26 26 H 1.09005 * 109.47256 * 60.00318 * 1 2 3 27 27 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47109 * 239.99742 * 2 1 3 29 29 H 1.08999 * 109.46852 * 119.99730 * 2 1 3 30 30 H 1.09002 * 109.47115 * 60.00148 * 3 2 1 31 31 H 1.08991 * 109.47058 * 299.99802 * 3 2 1 32 32 H 1.09003 * 109.47210 * 30.00112 * 5 4 3 33 33 H 1.09004 * 109.47392 * 150.00165 * 5 4 3 34 34 H 1.08995 * 109.47650 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.46940 * 300.00207 * 6 5 4 36 36 H 1.09004 * 109.46737 * 59.99694 * 6 5 4 37 37 H 1.08998 * 109.46621 * 60.00483 * 9 7 4 38 38 H 1.08996 * 109.47266 * 300.00146 * 9 7 4 39 39 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 40 40 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 41 41 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 43 43 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2368 1.4428 1.2696 6 6 4.4917 2.8853 1.7113 7 6 4.1793 1.4424 -1.1663 8 8 3.5733 1.4427 -2.2169 9 6 5.6863 1.4430 -1.1657 10 6 6.1892 1.4433 -2.5862 11 6 6.4190 2.6420 -3.2367 12 6 6.8804 2.6457 -4.5383 13 6 7.1130 1.4438 -5.1944 14 8 7.5670 1.4442 -6.4737 15 6 7.8810 2.6400 -7.0115 16 1 7.6904 3.5477 -6.4583 17 6 8.4487 2.7044 -8.2749 18 7 8.6814 1.5986 -8.9487 19 14 8.8845 4.3611 -9.0197 20 1 9.8686 5.0521 -8.1485 21 1 9.4739 4.1583 -10.3676 22 1 7.6577 5.1900 -9.1350 23 6 6.8753 0.2418 -4.5407 24 6 6.4193 0.2449 -3.2371 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.6475 0.9291 2.0291 33 1 5.1894 0.9290 1.1398 34 1 5.0366 2.8855 2.6552 35 1 5.0811 3.3991 0.9518 36 1 3.5391 3.3991 1.8411 37 1 6.0497 0.5533 -0.6514 38 1 6.0491 2.3333 -0.6520 39 1 6.2383 3.5762 -2.7258 40 1 7.0600 3.5820 -5.0455 41 1 9.0782 1.6437 -9.8326 42 1 7.0510 -0.6943 -5.0497 43 1 6.2385 -0.6895 -2.7267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264625145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -71.741680 kcal Electronic energy + Delta-G solvation = -22763.535951 eV Core-core repulsion = 19387.269037 eV Total energy + Delta-G solvation = -3376.266913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24836 -40.51232 -38.34075 -37.18153 -34.83853 -34.34757 -32.68608 -31.78661 -31.11763 -28.70427 -27.38441 -26.24754 -24.22142 -23.63921 -22.91887 -22.04921 -19.94301 -19.77055 -18.82149 -18.08588 -17.38016 -16.63879 -16.33782 -16.07610 -15.81688 -15.65587 -15.49561 -15.12728 -14.76168 -14.59827 -14.50485 -14.34949 -14.02368 -13.61422 -13.46299 -13.17296 -12.99703 -12.91414 -12.80130 -12.50475 -12.39789 -12.33802 -12.20957 -12.20733 -12.13495 -11.84012 -11.59759 -11.18843 -10.86030 -10.68606 -9.77335 -9.61987 -8.90268 -8.47448 -6.15879 0.60530 0.66979 1.33559 1.44804 1.50444 1.72617 2.11389 2.17808 2.82834 3.15877 3.51201 3.75582 3.92060 4.02480 4.07334 4.13702 4.14509 4.20386 4.38904 4.39157 4.49932 4.57275 4.60340 4.65015 4.68680 4.74540 4.79321 4.92157 4.98756 5.03644 5.09888 5.13945 5.15869 5.24245 5.29686 5.36181 5.44353 5.55886 5.70757 5.72461 5.77360 6.02385 6.21445 6.48355 6.96767 7.30947 7.78101 8.75925 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.002999 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.410426 B = 9335.389077 C = 9611.718545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.113 3.887 4 N -0.613 5.613 5 C 0.097 3.903 6 C -0.171 4.171 7 C 0.507 3.493 8 O -0.581 6.581 9 C -0.077 4.077 10 C -0.145 4.145 11 C -0.061 4.061 12 C -0.244 4.244 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.416 4.416 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.206 4.206 24 C -0.058 4.058 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.112 0.888 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 1.104 26.913 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.346 5.346 5 C -0.024 4.024 6 C -0.229 4.229 7 C 0.297 3.703 8 O -0.461 6.461 9 C -0.116 4.116 10 C -0.146 4.146 11 C -0.079 4.079 12 C -0.263 4.263 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.492 4.492 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.179 1.179 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.225 4.225 24 C -0.076 4.076 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.334 0.858 26.035 28.024 hybrid contribution 0.167 0.492 -1.184 1.293 sum -10.167 1.350 24.850 26.883 Atomic orbital electron populations 1.21680 0.94252 1.02330 1.02202 1.21813 0.96968 0.96720 1.01670 1.21534 0.79320 0.97248 1.02847 1.48190 1.06791 1.73139 1.06490 1.21896 0.98164 0.98291 0.84097 1.22215 1.02179 0.96177 1.02368 1.21201 0.91035 0.74965 0.83114 1.90735 1.71324 1.50808 1.33184 1.20580 0.90175 1.07028 0.93786 1.19272 1.05800 0.92513 0.97035 1.20903 0.95665 0.98472 0.92837 1.21222 1.10225 0.97263 0.97563 1.19920 0.93527 0.95325 0.84964 1.83936 1.73901 1.33524 1.22649 1.21795 1.42324 0.83627 1.01479 0.88279 1.26624 0.95835 1.03893 0.95718 1.70182 1.42609 1.29942 1.13288 0.84640 0.79301 0.74603 0.77591 1.17925 1.19406 1.18354 1.20433 1.10124 0.95296 0.96670 1.20852 0.95783 0.98624 0.92338 0.90792 0.93727 0.92066 0.94708 0.90229 0.87947 0.92965 0.88201 0.88550 0.89366 0.93230 0.92771 0.85422 0.85925 0.84636 0.86433 0.91792 0.86952 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -2.20 6.26 30.60 0.19 -2.01 16 3 C 0.11 1.97 5.41 86.38 0.47 2.44 16 4 N -0.61 -10.99 2.47 -821.81 -2.03 -13.02 16 5 C 0.10 0.87 5.93 86.38 0.51 1.38 16 6 C -0.17 -1.39 10.24 71.98 0.74 -0.66 16 7 C 0.51 13.37 7.67 87.66 0.67 14.05 16 8 O -0.58 -22.23 15.61 -3.05 -0.05 -22.28 16 9 C -0.08 -1.68 4.38 29.10 0.13 -1.55 16 10 C -0.15 -4.88 4.38 -19.84 -0.09 -4.96 16 11 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 12 C -0.24 -11.52 9.17 22.39 0.21 -11.32 16 13 C 0.11 6.05 6.65 22.58 0.15 6.20 16 14 O -0.23 -14.85 9.76 -22.72 -0.22 -15.08 16 15 C -0.42 -25.43 9.49 67.92 0.64 -24.79 16 16 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 17 C -0.02 -1.39 5.49 84.84 0.47 -0.92 16 18 N -0.92 -58.50 13.67 21.62 0.30 -58.21 16 19 Si 1.02 44.37 29.55 68.60 2.03 46.40 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 C -0.21 -9.55 9.99 22.39 0.22 -9.33 16 24 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 31 H 0.05 1.25 7.42 -2.39 -0.02 1.23 16 32 H 0.10 0.50 8.07 -2.39 -0.02 0.48 16 33 H 0.10 0.62 6.44 -2.38 -0.02 0.61 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.05 0.53 7.22 -2.39 -0.02 0.52 16 36 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.13 1.95 7.34 -2.39 -0.02 1.94 16 38 H 0.12 2.01 7.13 -2.39 -0.02 2.00 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.12 5.61 5.64 -2.91 -0.02 5.60 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 43 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -83.15 358.75 6.47 -76.69 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.99 Total: 22.26 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 5.45 Total: -36.77 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.74 Total: -71.23 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.27 Total: -37.36 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.15 6.47 -76.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264625145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.947 kcal (2) G-P(sol) polarization free energy of solvation -83.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds