Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46654 * 2 1 4 4 H 1.08994 * 109.46870 * 300.86482 * 3 2 1 5 5 O 1.42895 * 109.47558 * 60.87165 * 3 2 1 6 6 C 1.35897 * 117.00012 * 260.39055 * 5 3 2 7 7 C 1.38754 * 120.05561 * 5.22662 * 6 5 3 8 8 C 1.38120 * 119.94143 * 180.27501 * 7 6 5 9 9 C 1.38290 * 120.06049 * 359.77417 * 8 7 6 10 10 C 1.38244 * 120.10550 * 359.97287 * 9 8 7 11 11 C 1.38160 * 120.05878 * 0.02745 * 10 9 8 12 12 C 1.50707 * 120.02755 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46448 * 180.87063 * 3 2 1 14 14 O 1.21280 * 120.00021 * 253.79471 * 13 3 2 15 15 N 1.34783 * 120.00436 * 73.80237 * 13 3 2 16 16 C 1.46499 * 119.99605 * 5.63339 * 15 13 3 17 17 C 1.46495 * 120.00233 * 185.63704 * 15 13 3 18 18 C 1.50703 * 109.47213 * 89.99802 * 17 15 13 19 19 H 1.08004 * 119.99908 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00167 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99812 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47133 * 90.00161 * 22 20 18 24 24 H 1.48504 * 109.46667 * 209.99476 * 22 20 18 25 25 H 1.48495 * 109.47537 * 329.99559 * 22 20 18 26 26 H 1.09003 * 109.47238 * 300.00012 * 1 2 3 27 27 H 1.09001 * 109.47589 * 59.99886 * 1 2 3 28 28 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46805 * 240.00208 * 2 1 3 30 30 H 1.08997 * 109.47021 * 119.99645 * 2 1 3 31 31 H 1.08001 * 120.03010 * 0.03334 * 7 6 5 32 32 H 1.08003 * 119.97365 * 179.74828 * 8 7 6 33 33 H 1.07995 * 119.94981 * 179.97438 * 9 8 7 34 34 H 1.08006 * 119.96797 * 179.97438 * 10 9 8 35 35 H 1.08996 * 109.46998 * 89.99674 * 12 11 10 36 36 H 1.08994 * 109.46843 * 329.99616 * 12 11 10 37 37 H 1.08999 * 109.46795 * 209.99919 * 12 11 10 38 38 H 1.08998 * 109.47076 * 93.73093 * 16 15 13 39 39 H 1.08997 * 109.46905 * 213.73583 * 16 15 13 40 40 H 1.09001 * 109.47166 * 333.73125 * 16 15 13 41 41 H 1.08995 * 109.46919 * 209.99141 * 17 15 13 42 42 H 1.08999 * 109.47067 * 329.99878 * 17 15 13 43 43 H 0.97004 * 120.00208 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6639 1.9608 -0.8821 5 8 1.5804 2.1103 1.1768 6 6 0.4932 2.9149 1.0449 7 6 -0.1841 2.9751 -0.1646 8 6 -1.2854 3.7980 -0.2977 9 6 -1.7161 4.5578 0.7745 10 6 -1.0461 4.4956 1.9821 11 6 0.0561 3.6741 2.1204 12 6 0.7863 3.6071 3.4371 13 6 3.5467 1.4426 -0.0216 14 8 4.1675 1.7306 0.9797 15 7 4.2046 1.1226 -1.1536 16 6 3.4596 0.8955 -2.3944 17 6 5.6645 1.0020 -1.1433 18 6 6.0489 -0.4183 -0.8176 19 1 5.2823 -1.1571 -0.6360 20 6 7.3792 -0.7744 -0.7504 21 7 8.3127 0.1253 -0.9710 22 14 7.8555 -2.5348 -0.3459 23 1 7.9657 -3.3189 -1.6022 24 1 9.1623 -2.5443 0.3596 25 1 6.8176 -3.1406 0.5264 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.1519 2.3821 -1.0024 32 1 -1.8106 3.8484 -1.2401 33 1 -2.5771 5.2009 0.6683 34 1 -1.3841 5.0903 2.8179 35 1 0.3510 2.8214 4.0544 36 1 0.6973 4.5642 3.9509 37 1 1.8388 3.3874 3.2580 38 1 3.4160 1.8221 -2.9668 39 1 3.9606 0.1276 -2.9837 40 1 2.4477 0.5679 -2.1559 41 1 6.0581 1.2690 -2.1240 42 1 6.0792 1.6723 -0.3905 43 1 9.2486 -0.1253 -0.9241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267172195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -46.651809 kcal Electronic energy + Delta-G solvation = -23837.267969 eV Core-core repulsion = 20462.089034 eV Total energy + Delta-G solvation = -3375.178935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70349 -38.99416 -37.24162 -34.94668 -33.82166 -32.65953 -32.35668 -30.20695 -28.51083 -27.15314 -26.61793 -25.66224 -23.21788 -22.87557 -21.58312 -21.04260 -18.75525 -18.22097 -16.57308 -16.49963 -15.91182 -15.80361 -15.55888 -15.05887 -14.59802 -14.34534 -14.25546 -13.84645 -13.53620 -13.18792 -13.05384 -12.58100 -12.54605 -12.28342 -12.20190 -12.15110 -11.98350 -11.85428 -11.64225 -11.39989 -11.26896 -11.10079 -10.92521 -10.83168 -10.59287 -10.44744 -10.17996 -9.66793 -8.95116 -8.84077 -8.46536 -8.05153 -7.71854 -6.07238 -4.12658 1.25854 1.40659 3.00607 3.23135 3.28343 3.35536 3.40291 3.70306 4.04366 4.41696 4.64583 4.73538 4.81318 4.86372 4.91920 5.05111 5.15044 5.23275 5.27119 5.35888 5.40877 5.49770 5.54989 5.65382 5.67537 5.76887 5.83738 5.83793 5.91302 6.06285 6.10122 6.24419 6.26978 6.31788 6.42856 6.49800 6.74669 6.97682 7.39870 7.42004 7.51606 7.88800 8.18714 8.30131 8.84265 8.99674 9.52594 11.00870 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.003844 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.329012 B = 7281.724961 C = 7503.312290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.065 3.935 4 H 0.094 0.906 5 O -0.277 6.277 6 C 0.137 3.863 7 C -0.211 4.211 8 C -0.086 4.086 9 C -0.162 4.162 10 C -0.085 4.085 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.506 3.494 14 O -0.519 6.519 15 N -0.598 5.598 16 C 0.073 3.927 17 C 0.246 3.754 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.661 5.417 -0.413 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.111 0.889 5 O -0.189 6.189 6 C 0.090 3.910 7 C -0.229 4.229 8 C -0.105 4.105 9 C -0.180 4.180 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.165 4.165 13 C 0.291 3.709 14 O -0.395 6.395 15 N -0.332 5.332 16 C -0.071 4.071 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.967 5.552 0.292 20.726 hybrid contribution 0.263 -1.053 -0.237 1.110 sum -19.704 4.499 0.055 20.211 Atomic orbital electron populations 1.21905 0.94830 1.02165 1.02095 1.21988 0.96645 0.94315 1.04712 1.22526 0.94169 0.94504 0.88345 0.88887 1.86232 1.42055 1.57013 1.33568 1.18970 0.87293 0.90906 0.93786 1.21349 0.99400 1.04627 0.97564 1.20875 0.95693 0.95266 0.98626 1.20982 1.01504 1.01964 0.93548 1.20861 0.94141 0.97631 0.97660 1.19309 0.98235 0.98678 0.95552 1.20644 1.01211 1.01689 0.92967 1.19943 0.87807 0.78898 0.84294 1.90693 1.68521 1.47154 1.33082 1.48075 1.10022 1.67641 1.07420 1.21836 0.96273 1.01240 0.87755 1.19336 0.71921 0.97708 0.98341 1.21425 0.92033 0.94902 1.48479 0.92379 1.24936 0.96274 0.97755 0.95082 1.69932 1.00433 1.33566 1.49281 0.86488 0.78037 0.84425 0.78435 1.20611 1.21035 1.19854 0.92203 0.92521 0.92098 0.89251 0.89969 0.85083 0.86045 0.86206 0.85647 0.91499 0.91919 0.90389 0.93426 0.90388 0.92162 0.94736 0.93607 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.50 37.16 0.32 -1.37 16 2 C -0.14 -1.93 5.32 -26.73 -0.14 -2.07 16 3 C 0.06 1.04 1.70 -27.88 -0.05 0.99 16 4 H 0.09 1.26 4.52 -51.93 -0.23 1.03 16 5 O -0.28 -4.74 8.09 -38.94 -0.32 -5.06 16 6 C 0.14 1.97 5.52 -39.22 -0.22 1.76 16 7 C -0.21 -2.54 7.41 -39.43 -0.29 -2.83 16 8 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 9 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 10 C -0.08 -0.92 9.70 -39.61 -0.38 -1.30 16 11 C -0.12 -1.55 5.89 -104.47 -0.62 -2.17 16 12 C -0.11 -1.36 9.80 36.01 0.35 -1.01 16 13 C 0.51 10.89 6.97 -10.98 -0.08 10.81 16 14 O -0.52 -13.71 16.11 -13.97 -0.22 -13.94 16 15 N -0.60 -12.63 2.86 -182.96 -0.52 -13.16 16 16 C 0.07 1.11 9.92 59.85 0.59 1.71 16 17 C 0.25 6.42 5.22 -5.19 -0.03 6.40 16 18 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 22 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.06 0.72 6.64 -51.93 -0.34 0.38 16 27 H 0.06 0.53 6.58 -51.93 -0.34 0.19 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.16 6.20 -51.93 -0.32 0.84 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.40 4.44 -52.49 -0.23 1.17 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.08 1.17 7.52 -51.93 -0.39 0.78 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.06 0.73 4.52 -51.93 -0.23 0.50 16 41 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -33.73 346.96 -8.12 -41.85 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.25 Total: 0.06 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.76 Total: -5.93 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.91 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.54 Total: -19.00 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.73 -8.12 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267172195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.798 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds