Wall clock time and date at job start Tue Mar 31 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46654 * 2 1 4 4 H 1.08994 * 109.46870 * 300.86482 * 3 2 1 5 5 O 1.42895 * 109.47558 * 60.87165 * 3 2 1 6 6 C 1.35897 * 117.00012 * 260.39055 * 5 3 2 7 7 C 1.38754 * 120.05561 * 5.22662 * 6 5 3 8 8 C 1.38120 * 119.94143 * 180.27501 * 7 6 5 9 9 C 1.38290 * 120.06049 * 359.77417 * 8 7 6 10 10 C 1.38244 * 120.10550 * 359.97287 * 9 8 7 11 11 C 1.38160 * 120.05878 * 0.02745 * 10 9 8 12 12 C 1.50707 * 120.02755 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46448 * 180.87063 * 3 2 1 14 14 O 1.21280 * 120.00021 * 253.79471 * 13 3 2 15 15 N 1.34783 * 120.00436 * 73.80237 * 13 3 2 16 16 C 1.46499 * 119.99605 * 5.63339 * 15 13 3 17 17 C 1.46495 * 120.00233 * 185.63704 * 15 13 3 18 18 C 1.50703 * 109.47213 * 89.99802 * 17 15 13 19 19 H 1.08004 * 119.99908 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00167 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00068 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99812 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47133 * 90.00161 * 22 20 18 24 24 H 1.48504 * 109.46667 * 209.99476 * 22 20 18 25 25 H 1.48495 * 109.47537 * 329.99559 * 22 20 18 26 26 H 1.09003 * 109.47238 * 300.00012 * 1 2 3 27 27 H 1.09001 * 109.47589 * 59.99886 * 1 2 3 28 28 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46805 * 240.00208 * 2 1 3 30 30 H 1.08997 * 109.47021 * 119.99645 * 2 1 3 31 31 H 1.08001 * 120.03010 * 0.03334 * 7 6 5 32 32 H 1.08003 * 119.97365 * 179.74828 * 8 7 6 33 33 H 1.07995 * 119.94981 * 179.97438 * 9 8 7 34 34 H 1.08006 * 119.96797 * 179.97438 * 10 9 8 35 35 H 1.08996 * 109.46998 * 89.99674 * 12 11 10 36 36 H 1.08994 * 109.46843 * 329.99616 * 12 11 10 37 37 H 1.08999 * 109.46795 * 209.99919 * 12 11 10 38 38 H 1.08998 * 109.47076 * 93.73093 * 16 15 13 39 39 H 1.08997 * 109.46905 * 213.73583 * 16 15 13 40 40 H 1.09001 * 109.47166 * 333.73125 * 16 15 13 41 41 H 1.08995 * 109.46919 * 209.99141 * 17 15 13 42 42 H 1.08999 * 109.47067 * 329.99878 * 17 15 13 43 43 H 0.97004 * 120.00208 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6639 1.9608 -0.8821 5 8 1.5804 2.1103 1.1768 6 6 0.4932 2.9149 1.0449 7 6 -0.1841 2.9751 -0.1646 8 6 -1.2854 3.7980 -0.2977 9 6 -1.7161 4.5578 0.7745 10 6 -1.0461 4.4956 1.9821 11 6 0.0561 3.6741 2.1204 12 6 0.7863 3.6071 3.4371 13 6 3.5467 1.4426 -0.0216 14 8 4.1675 1.7306 0.9797 15 7 4.2046 1.1226 -1.1536 16 6 3.4596 0.8955 -2.3944 17 6 5.6645 1.0020 -1.1433 18 6 6.0489 -0.4183 -0.8176 19 1 5.2823 -1.1571 -0.6360 20 6 7.3792 -0.7744 -0.7504 21 7 8.3127 0.1253 -0.9710 22 14 7.8555 -2.5348 -0.3459 23 1 7.9657 -3.3189 -1.6022 24 1 9.1623 -2.5443 0.3596 25 1 6.8176 -3.1406 0.5264 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.1519 2.3821 -1.0024 32 1 -1.8106 3.8484 -1.2401 33 1 -2.5771 5.2009 0.6683 34 1 -1.3841 5.0903 2.8179 35 1 0.3510 2.8214 4.0544 36 1 0.6973 4.5642 3.9509 37 1 1.8388 3.3874 3.2580 38 1 3.4160 1.8221 -2.9668 39 1 3.9606 0.1276 -2.9837 40 1 2.4477 0.5679 -2.1559 41 1 6.0581 1.2690 -2.1240 42 1 6.0792 1.6723 -0.3905 43 1 9.2486 -0.1253 -0.9241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267172195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:07 Heat of formation + Delta-G solvation = -66.704215 kcal Electronic energy + Delta-G solvation = -23838.137506 eV Core-core repulsion = 20462.089034 eV Total energy + Delta-G solvation = -3376.048472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88043 -40.40653 -38.38936 -36.73175 -35.15890 -34.44367 -33.39656 -31.13715 -30.23653 -28.49580 -27.61421 -27.24229 -24.90747 -24.04006 -22.50975 -22.23006 -20.26476 -19.32260 -18.70586 -17.98742 -17.30584 -16.90366 -16.73232 -16.44853 -16.04781 -15.92466 -15.47214 -14.83513 -14.68318 -14.60218 -14.16671 -14.00647 -13.84938 -13.56597 -13.48701 -13.34273 -13.20286 -13.12352 -13.00014 -12.84748 -12.71097 -12.56944 -12.27954 -12.24200 -12.02934 -11.85015 -11.74097 -11.44728 -10.66312 -10.60063 -9.71191 -9.51949 -9.02924 -8.24985 -6.40246 0.41547 0.51782 1.35483 1.39077 1.48691 1.60393 1.73645 2.35961 2.63361 2.84996 3.05050 3.43615 3.55972 3.73398 3.90087 3.97143 4.12110 4.23828 4.29092 4.37307 4.44593 4.49238 4.63761 4.67156 4.73015 4.76751 4.77069 4.88230 4.93602 5.00269 5.01312 5.07776 5.18534 5.30736 5.32293 5.45912 5.49772 5.56351 5.63824 5.76507 5.92329 6.01510 6.41719 6.63146 6.69333 7.21071 7.35705 8.82604 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025604 B = 0.003844 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.329012 B = 7281.724961 C = 7503.312290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.079 3.921 4 H 0.125 0.875 5 O -0.308 6.308 6 C 0.102 3.898 7 C -0.214 4.214 8 C -0.085 4.085 9 C -0.156 4.156 10 C -0.086 4.086 11 C -0.142 4.142 12 C -0.105 4.105 13 C 0.493 3.507 14 O -0.586 6.586 15 N -0.601 5.601 16 C 0.065 3.935 17 C 0.259 3.741 18 C -0.545 4.545 19 H 0.057 0.943 20 C 0.008 3.992 21 N -0.928 5.928 22 Si 0.969 3.031 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.273 1.273 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.030 0.970 42 H -0.005 1.005 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 4.985 -2.115 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.020 3.980 4 H 0.143 0.857 5 O -0.221 6.221 6 C 0.057 3.943 7 C -0.232 4.232 8 C -0.102 4.102 9 C -0.174 4.174 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.161 4.161 13 C 0.281 3.719 14 O -0.466 6.466 15 N -0.333 5.333 16 C -0.077 4.077 17 C 0.138 3.862 18 C -0.584 4.584 19 H 0.075 0.925 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.048 0.952 42 H 0.013 0.987 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.428 5.118 -1.460 24.025 hybrid contribution 1.256 -0.789 0.298 1.513 sum -22.172 4.329 -1.162 22.621 Atomic orbital electron populations 1.21845 0.91986 1.03437 1.02660 1.22003 0.98949 0.92393 1.03929 1.22406 0.89596 0.96377 0.89632 0.85744 1.86197 1.43757 1.58126 1.34052 1.19315 0.87493 0.91927 0.95590 1.21529 0.99742 1.05144 0.96761 1.21297 0.94845 0.94031 1.00070 1.21428 1.01761 1.01440 0.92786 1.21174 0.93159 0.96932 0.99136 1.19574 0.99529 0.99727 0.95407 1.20585 0.98909 1.02935 0.93720 1.21061 0.90440 0.77246 0.83193 1.90646 1.70486 1.50027 1.35416 1.48070 1.08482 1.67114 1.09676 1.22195 0.97312 1.02811 0.85360 1.18815 0.75343 0.95920 0.96169 1.21699 0.92451 0.95572 1.48655 0.92478 1.25883 0.96204 1.02383 0.94679 1.70056 1.00875 1.35820 1.50026 0.85387 0.77442 0.78969 0.78851 1.18483 1.20763 1.19750 0.93522 0.90005 0.90453 0.87984 0.92828 0.83794 0.82817 0.83075 0.83331 0.91089 0.89836 0.94142 0.90804 0.90476 0.88403 0.95209 0.98650 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.50 71.98 0.61 -2.16 16 2 C -0.13 -3.62 5.32 30.60 0.16 -3.46 16 3 C 0.08 2.55 1.70 29.85 0.05 2.61 16 4 H 0.13 3.11 4.52 -2.39 -0.01 3.09 16 5 O -0.31 -10.95 8.09 -73.73 -0.60 -11.54 16 6 C 0.10 2.89 5.52 22.51 0.12 3.02 16 7 C -0.21 -4.56 7.41 22.37 0.17 -4.40 16 8 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 9 C -0.16 -2.49 10.04 22.28 0.22 -2.26 16 10 C -0.09 -1.66 9.70 22.25 0.22 -1.44 16 11 C -0.14 -3.70 5.89 -19.77 -0.12 -3.81 16 12 C -0.10 -2.74 9.80 71.24 0.70 -2.05 16 13 C 0.49 22.15 6.97 87.66 0.61 22.76 16 14 O -0.59 -33.42 16.11 15.64 0.25 -33.16 16 15 N -0.60 -26.03 2.86 -851.15 -2.43 -28.47 16 16 C 0.06 1.86 9.92 127.77 1.27 3.13 16 17 C 0.26 14.22 5.22 85.64 0.45 14.67 16 18 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 19 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 20 C 0.01 0.44 5.46 84.65 0.46 0.90 16 21 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 22 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 26 H 0.05 1.05 6.64 -2.39 -0.02 1.04 16 27 H 0.08 1.18 6.58 -2.39 -0.02 1.17 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 2.43 6.20 -2.39 -0.01 2.41 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.14 2.54 4.44 -2.91 -0.01 2.52 16 32 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 37 H 0.04 1.34 7.52 -2.39 -0.02 1.32 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 40 H 0.10 2.06 4.52 -2.39 -0.01 2.05 16 41 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 42 H 0.00 -0.30 7.35 -2.39 -0.02 -0.32 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -79.98 346.96 5.93 -74.05 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.01 Total: 13.46 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.39 Total: -5.02 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -2.15 Total: -84.84 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.34 Total: -44.71 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.98 5.93 -74.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267172195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.348 kcal (2) G-P(sol) polarization free energy of solvation -79.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds