Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08999 * 109.47403 * 54.99766 * 3 2 1 5 5 O 1.42901 * 109.46846 * 294.99812 * 3 2 1 6 6 C 1.35901 * 116.99951 * 94.10934 * 5 3 2 7 7 C 1.38756 * 120.05277 * 2.25638 * 6 5 3 8 8 C 1.38128 * 119.94031 * 179.70337 * 7 6 5 9 9 C 1.38286 * 120.05452 * 0.59312 * 8 7 6 10 10 C 1.38239 * 120.11415 * 359.67951 * 9 8 7 11 11 C 1.38172 * 120.05413 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.02456 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47163 * 174.99986 * 3 2 1 14 14 O 1.21279 * 119.99938 * 114.99608 * 13 3 2 15 15 N 1.34775 * 120.00217 * 295.00205 * 13 3 2 16 16 C 1.46501 * 119.99557 * 359.97438 * 15 13 3 17 17 C 1.46497 * 120.00321 * 179.97438 * 15 13 3 18 18 C 1.50705 * 109.46598 * 89.99812 * 17 15 13 19 19 H 1.07993 * 120.00366 * 359.97438 * 18 17 15 20 20 C 1.37885 * 119.99447 * 180.02562 * 18 17 15 21 21 N 1.31509 * 119.99767 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00179 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47369 * 89.99686 * 22 20 18 24 24 H 1.48504 * 109.47114 * 210.00519 * 22 20 18 25 25 H 1.48503 * 109.47169 * 329.99766 * 22 20 18 26 26 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47310 * 300.00033 * 1 2 3 28 28 H 1.08998 * 109.47135 * 59.99835 * 1 2 3 29 29 H 1.08997 * 109.46906 * 240.00207 * 2 1 3 30 30 H 1.08998 * 109.47135 * 120.00165 * 2 1 3 31 31 H 1.07997 * 120.02952 * 359.97438 * 7 6 5 32 32 H 1.07996 * 119.97088 * 180.29559 * 8 7 6 33 33 H 1.08003 * 119.94486 * 179.70480 * 9 8 7 34 34 H 1.08000 * 119.97805 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47336 * 269.97574 * 12 11 10 36 36 H 1.08997 * 109.47401 * 29.98551 * 12 11 10 37 37 H 1.09012 * 109.46791 * 149.97711 * 12 11 10 38 38 H 1.09001 * 109.47033 * 90.00443 * 16 15 13 39 39 H 1.09000 * 109.47059 * 209.99845 * 16 15 13 40 40 H 1.08996 * 109.47464 * 330.00097 * 16 15 13 41 41 H 1.08996 * 109.47263 * 209.99347 * 17 15 13 42 42 H 1.09000 * 109.46868 * 330.00481 * 17 15 13 43 43 H 0.97001 * 119.99993 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 0.5055 2.7950 -1.2117 7 6 -0.2259 2.9177 -0.0389 8 6 -1.3978 3.6488 -0.0305 9 6 -1.8487 4.2479 -1.1925 10 6 -1.1248 4.1224 -2.3635 11 6 0.0513 3.3973 -2.3757 12 6 0.8402 3.2615 -3.6525 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8611 -0.7875 15 7 4.1261 0.9828 1.2473 16 6 3.3009 0.4798 2.3484 17 6 5.5861 0.9841 1.3675 18 6 6.0393 2.2893 1.9693 19 1 5.3126 3.0426 2.2351 20 6 7.3821 2.5221 2.1794 21 7 7.7776 3.6608 2.7049 22 14 8.6392 1.2199 1.7175 23 1 9.0766 1.4298 0.3140 24 1 9.8124 1.3216 2.6222 25 1 8.0280 -0.1271 1.8493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.1231 2.4456 0.8676 32 1 -1.9649 3.7485 0.8831 33 1 -2.7677 4.8151 -1.1850 34 1 -1.4791 4.5909 -3.2698 35 1 0.5039 2.3781 -4.1952 36 1 0.6880 4.1469 -4.2696 37 1 1.8996 3.1612 -3.4161 38 1 3.1305 -0.5886 2.2160 39 1 3.8139 0.6514 3.2947 40 1 2.3443 1.0024 2.3537 41 1 5.8986 0.1603 2.0092 42 1 6.0320 0.8650 0.3800 43 1 8.7222 3.8244 2.8531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267172197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -40.465680 kcal Electronic energy + Delta-G solvation = -23883.156304 eV Core-core repulsion = 20508.245620 eV Total energy + Delta-G solvation = -3374.910684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74616 -39.08627 -37.27221 -35.12002 -33.85790 -32.63285 -32.31149 -30.23689 -28.96403 -27.33901 -26.62705 -25.85462 -23.18889 -22.66417 -21.56784 -20.99556 -18.80558 -18.26030 -16.97309 -16.59683 -15.94129 -15.84502 -15.60289 -15.12163 -14.73102 -14.42037 -13.93643 -13.83309 -13.58098 -13.32487 -13.14171 -12.64867 -12.59436 -12.43127 -12.29348 -12.20918 -12.13525 -11.91300 -11.75568 -11.56183 -11.38947 -11.12770 -10.98381 -10.84387 -10.55031 -10.47295 -10.16293 -9.57254 -9.02820 -8.83200 -8.61335 -8.03950 -7.80289 -6.11019 -4.10500 1.28413 1.43218 2.93512 3.16877 3.27954 3.33737 3.35938 3.71765 3.94349 4.37448 4.60995 4.68904 4.77819 4.79192 4.89383 5.04494 5.08605 5.21526 5.25283 5.33866 5.38139 5.46941 5.54249 5.61855 5.66515 5.67627 5.75692 5.81155 5.85419 5.96271 6.03073 6.16915 6.26626 6.32155 6.44838 6.50754 6.60551 6.77393 6.88290 7.21701 7.45917 7.56885 8.10478 8.42972 8.83487 8.92556 9.48479 11.02331 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.004092 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.160964 B = 6840.963351 C = 7156.566377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C 0.065 3.935 4 H 0.098 0.902 5 O -0.277 6.277 6 C 0.138 3.862 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.161 4.161 10 C -0.085 4.085 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.509 3.491 14 O -0.516 6.516 15 N -0.593 5.593 16 C 0.078 3.922 17 C 0.217 3.783 18 C -0.532 4.532 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.100 -5.840 -5.022 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C 0.005 3.995 4 H 0.116 0.884 5 O -0.189 6.189 6 C 0.092 3.908 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.180 4.180 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.164 4.164 13 C 0.294 3.706 14 O -0.391 6.391 15 N -0.326 5.326 16 C -0.066 4.066 17 C 0.097 3.903 18 C -0.570 4.570 19 H 0.092 0.908 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.392 -5.555 -5.613 20.939 hybrid contribution 0.625 -0.463 0.282 0.827 sum -18.767 -6.018 -5.331 20.417 Atomic orbital electron populations 1.21936 0.94747 1.02133 1.02311 1.22138 0.96983 0.94641 1.04622 1.22444 0.94721 0.94691 0.87641 0.88443 1.86212 1.36561 1.62354 1.33779 1.18922 0.85961 0.92123 0.93805 1.21335 0.98154 1.05556 0.97718 1.20876 0.95396 0.95963 0.98155 1.20981 1.01026 1.02874 0.93069 1.20856 0.93488 0.97661 0.98275 1.19281 0.97119 1.01145 0.94304 1.20635 1.00732 1.01563 0.93507 1.19887 0.88248 0.79203 0.83291 1.90705 1.64445 1.44966 1.38993 1.47739 1.08775 1.61647 1.14486 1.21836 0.95154 0.97780 0.91814 1.19708 0.74755 0.98015 0.97824 1.21316 0.93460 1.00795 1.41469 0.90762 1.24854 0.98195 0.95434 0.94452 1.69893 1.16058 1.23531 1.43949 0.86846 0.81398 0.82361 0.79059 1.19832 1.21006 1.19035 0.92165 0.92355 0.92146 0.90274 0.89049 0.85139 0.86001 0.86184 0.85638 0.91591 0.91881 0.90462 0.93055 0.90106 0.92336 0.94891 0.94412 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.45 37.16 0.31 -1.22 16 2 C -0.15 -1.78 5.38 -26.73 -0.14 -1.92 16 3 C 0.07 1.03 1.76 -27.88 -0.05 0.98 16 4 H 0.10 1.38 4.37 -51.93 -0.23 1.15 16 5 O -0.28 -4.74 8.25 -39.29 -0.32 -5.07 16 6 C 0.14 2.03 5.30 -39.22 -0.21 1.82 16 7 C -0.21 -2.63 7.15 -39.43 -0.28 -2.91 16 8 C -0.09 -0.93 10.04 -39.60 -0.40 -1.33 16 9 C -0.16 -1.68 10.04 -39.56 -0.40 -2.07 16 10 C -0.08 -0.95 9.70 -39.61 -0.38 -1.33 16 11 C -0.12 -1.58 5.89 -104.47 -0.62 -2.20 16 12 C -0.11 -1.35 9.79 36.01 0.35 -0.99 16 13 C 0.51 10.68 7.10 -10.98 -0.08 10.60 16 14 O -0.52 -13.35 16.09 -14.30 -0.23 -13.58 16 15 N -0.59 -12.05 2.86 -182.96 -0.52 -12.58 16 16 C 0.08 1.13 8.92 59.85 0.53 1.66 16 17 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 18 C -0.53 -15.30 9.94 -34.43 -0.34 -15.64 16 19 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 20 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 22 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.51 6.79 -51.93 -0.35 0.16 16 28 H 0.06 0.68 6.27 -51.93 -0.33 0.36 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 0.98 5.06 -51.93 -0.26 0.72 16 31 H 0.13 1.48 4.54 -52.49 -0.24 1.25 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.08 1.16 7.53 -51.92 -0.39 0.76 16 38 H 0.05 0.60 6.95 -51.93 -0.36 0.23 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.70 6.11 -51.93 -0.32 0.38 16 41 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 42 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 43 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -35.04 341.27 -7.81 -42.85 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.17 Total: 0.57 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.82 Total: -7.26 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.25 Total: -39.49 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.55 Total: -18.65 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.04 -7.81 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267172197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds