Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08999 * 109.47403 * 54.99766 * 3 2 1 5 5 O 1.42901 * 109.46846 * 294.99812 * 3 2 1 6 6 C 1.35901 * 116.99951 * 94.10934 * 5 3 2 7 7 C 1.38756 * 120.05277 * 2.25638 * 6 5 3 8 8 C 1.38128 * 119.94031 * 179.70337 * 7 6 5 9 9 C 1.38286 * 120.05452 * 0.59312 * 8 7 6 10 10 C 1.38239 * 120.11415 * 359.67951 * 9 8 7 11 11 C 1.38172 * 120.05413 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.02456 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47163 * 174.99986 * 3 2 1 14 14 O 1.21279 * 119.99938 * 114.99608 * 13 3 2 15 15 N 1.34775 * 120.00217 * 295.00205 * 13 3 2 16 16 C 1.46501 * 119.99557 * 359.97438 * 15 13 3 17 17 C 1.46497 * 120.00321 * 179.97438 * 15 13 3 18 18 C 1.50705 * 109.46598 * 89.99812 * 17 15 13 19 19 H 1.07993 * 120.00366 * 359.97438 * 18 17 15 20 20 C 1.37885 * 119.99447 * 180.02562 * 18 17 15 21 21 N 1.31509 * 119.99767 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00179 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47369 * 89.99686 * 22 20 18 24 24 H 1.48504 * 109.47114 * 210.00519 * 22 20 18 25 25 H 1.48503 * 109.47169 * 329.99766 * 22 20 18 26 26 H 1.09001 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47310 * 300.00033 * 1 2 3 28 28 H 1.08998 * 109.47135 * 59.99835 * 1 2 3 29 29 H 1.08997 * 109.46906 * 240.00207 * 2 1 3 30 30 H 1.08998 * 109.47135 * 120.00165 * 2 1 3 31 31 H 1.07997 * 120.02952 * 359.97438 * 7 6 5 32 32 H 1.07996 * 119.97088 * 180.29559 * 8 7 6 33 33 H 1.08003 * 119.94486 * 179.70480 * 9 8 7 34 34 H 1.08000 * 119.97805 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47336 * 269.97574 * 12 11 10 36 36 H 1.08997 * 109.47401 * 29.98551 * 12 11 10 37 37 H 1.09012 * 109.46791 * 149.97711 * 12 11 10 38 38 H 1.09001 * 109.47033 * 90.00443 * 16 15 13 39 39 H 1.09000 * 109.47059 * 209.99845 * 16 15 13 40 40 H 1.08996 * 109.47464 * 330.00097 * 16 15 13 41 41 H 1.08996 * 109.47263 * 209.99347 * 17 15 13 42 42 H 1.09000 * 109.46868 * 330.00481 * 17 15 13 43 43 H 0.97001 * 119.99993 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 0.5055 2.7950 -1.2117 7 6 -0.2259 2.9177 -0.0389 8 6 -1.3978 3.6488 -0.0305 9 6 -1.8487 4.2479 -1.1925 10 6 -1.1248 4.1224 -2.3635 11 6 0.0513 3.3973 -2.3757 12 6 0.8402 3.2615 -3.6525 13 6 3.5419 1.4443 0.1238 14 8 4.2250 1.8611 -0.7875 15 7 4.1261 0.9828 1.2473 16 6 3.3009 0.4798 2.3484 17 6 5.5861 0.9841 1.3675 18 6 6.0393 2.2893 1.9693 19 1 5.3126 3.0426 2.2351 20 6 7.3821 2.5221 2.1794 21 7 7.7776 3.6608 2.7049 22 14 8.6392 1.2199 1.7175 23 1 9.0766 1.4298 0.3140 24 1 9.8124 1.3216 2.6222 25 1 8.0280 -0.1271 1.8493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.1231 2.4456 0.8676 32 1 -1.9649 3.7485 0.8831 33 1 -2.7677 4.8151 -1.1850 34 1 -1.4791 4.5909 -3.2698 35 1 0.5039 2.3781 -4.1952 36 1 0.6880 4.1469 -4.2696 37 1 1.8996 3.1612 -3.4161 38 1 3.1305 -0.5886 2.2160 39 1 3.8139 0.6514 3.2947 40 1 2.3443 1.0024 2.3537 41 1 5.8986 0.1603 2.0092 42 1 6.0320 0.8650 0.3800 43 1 8.7222 3.8244 2.8531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267172197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = -62.595354 kcal Electronic energy + Delta-G solvation = -23884.115919 eV Core-core repulsion = 20508.245620 eV Total energy + Delta-G solvation = -3375.870299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91453 -40.46419 -38.40010 -36.80964 -35.16065 -34.41948 -33.39742 -31.23136 -30.67696 -28.58491 -27.63024 -27.29980 -24.56800 -24.03182 -22.52015 -22.16781 -20.29334 -19.36585 -19.15178 -17.99873 -17.34027 -16.93411 -16.70416 -16.46540 -16.29751 -15.61137 -15.36944 -14.96724 -14.80578 -14.57929 -14.41138 -14.03102 -13.88308 -13.72671 -13.59341 -13.32515 -13.25589 -13.17517 -12.96527 -12.84776 -12.73188 -12.48495 -12.29622 -12.07949 -12.00925 -11.82527 -11.77070 -11.41231 -10.85899 -10.64888 -9.72176 -9.50786 -9.02425 -8.36638 -6.42598 0.39804 0.50966 1.31106 1.36312 1.44076 1.56724 1.69568 2.29193 2.59441 2.83174 2.97895 3.39635 3.53903 3.73367 3.88826 3.96216 4.14255 4.23525 4.33178 4.39535 4.43051 4.46852 4.59260 4.65992 4.72262 4.75934 4.76519 4.77508 4.88336 4.90984 4.98539 5.04399 5.08693 5.31061 5.33166 5.41579 5.44103 5.50423 5.54980 5.62042 5.89717 6.18777 6.39088 6.56457 6.58756 7.15060 7.28131 8.80450 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021647 B = 0.004092 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.160964 B = 6840.963351 C = 7156.566377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.076 3.924 4 H 0.115 0.885 5 O -0.308 6.308 6 C 0.105 3.895 7 C -0.215 4.215 8 C -0.087 4.087 9 C -0.157 4.157 10 C -0.086 4.086 11 C -0.142 4.142 12 C -0.104 4.104 13 C 0.496 3.504 14 O -0.582 6.582 15 N -0.597 5.597 16 C 0.067 3.933 17 C 0.224 3.776 18 C -0.540 4.540 19 H 0.027 0.973 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.949 3.051 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.233 1.233 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 -7.641 -4.265 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.016 3.984 4 H 0.132 0.868 5 O -0.222 6.222 6 C 0.060 3.940 7 C -0.233 4.233 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.160 4.160 13 C 0.283 3.717 14 O -0.462 6.462 15 N -0.329 5.329 16 C -0.074 4.074 17 C 0.102 3.898 18 C -0.579 4.579 19 H 0.045 0.955 20 C -0.187 4.187 21 N -0.585 5.585 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.156 1.156 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.035 -7.385 -4.813 23.732 hybrid contribution 1.306 0.240 0.053 1.329 sum -20.728 -7.145 -4.760 22.436 Atomic orbital electron populations 1.21886 0.92585 1.03483 1.02358 1.22144 0.98664 0.91816 1.04893 1.22414 0.90534 0.97273 0.88155 0.86795 1.86166 1.38258 1.63393 1.34349 1.19260 0.85949 0.93415 0.95383 1.21505 0.98661 1.06023 0.97160 1.21278 0.94742 0.94852 0.99596 1.21416 1.01660 1.01996 0.92407 1.21187 0.92513 0.96819 0.99857 1.19579 0.98365 1.02103 0.94200 1.20583 0.98449 1.02940 0.94051 1.20960 0.90644 0.77643 0.82439 1.90656 1.66427 1.47799 1.41295 1.47828 1.07855 1.61314 1.15939 1.22237 0.95302 1.00439 0.89441 1.19409 0.77626 0.96281 0.96525 1.21551 0.93001 1.01808 1.41534 0.95479 1.25869 1.00649 0.97994 0.94148 1.70048 1.16852 1.26053 1.45536 0.85706 0.78458 0.80541 0.78194 1.20483 1.19797 1.15627 0.90081 0.90690 0.93723 0.91682 0.87018 0.84247 0.83092 0.83079 0.83165 0.90723 0.89925 0.94085 0.88990 0.90664 0.89525 0.92156 0.96463 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.45 71.98 0.61 -1.91 16 2 C -0.14 -3.12 5.38 30.59 0.16 -2.95 16 3 C 0.08 2.39 1.76 29.85 0.05 2.44 16 4 H 0.11 3.11 4.37 -2.39 -0.01 3.10 16 5 O -0.31 -11.00 8.25 -73.45 -0.61 -11.61 16 6 C 0.10 3.10 5.30 22.51 0.12 3.22 16 7 C -0.22 -5.07 7.15 22.37 0.16 -4.91 16 8 C -0.09 -1.62 10.04 22.26 0.22 -1.39 16 9 C -0.16 -2.75 10.04 22.28 0.22 -2.53 16 10 C -0.09 -1.74 9.70 22.25 0.22 -1.53 16 11 C -0.14 -3.80 5.89 -19.77 -0.12 -3.92 16 12 C -0.10 -2.69 9.79 71.24 0.70 -1.99 16 13 C 0.50 21.44 7.10 87.66 0.62 22.06 16 14 O -0.58 -32.03 16.09 15.96 0.26 -31.77 16 15 N -0.60 -24.27 2.86 -851.14 -2.43 -26.70 16 16 C 0.07 1.79 8.92 127.77 1.14 2.93 16 17 C 0.22 10.94 4.23 85.64 0.36 11.30 16 18 C -0.54 -32.20 9.94 25.60 0.25 -31.95 16 19 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 20 C 0.01 0.69 5.47 84.66 0.46 1.15 16 21 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 22 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.23 -9.68 6.54 99.48 0.65 -9.03 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.04 6.79 -2.39 -0.02 1.03 16 28 H 0.04 0.93 6.27 -2.39 -0.01 0.92 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 2.02 5.06 -2.39 -0.01 2.00 16 31 H 0.14 2.86 4.54 -2.91 -0.01 2.85 16 32 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 37 H 0.04 1.34 7.53 -2.38 -0.02 1.32 16 38 H 0.09 1.75 6.95 -2.39 -0.02 1.73 16 39 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 40 H 0.09 1.81 6.11 -2.39 -0.01 1.80 16 41 H 0.06 2.62 7.13 -2.39 -0.02 2.61 16 42 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -83.25 341.27 5.55 -77.70 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.95 Total: 15.92 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.19 Total: -9.96 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.13 Total: -86.78 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.35 Total: -43.38 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -83.25 5.55 -77.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267172197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.105 kcal (2) G-P(sol) polarization free energy of solvation -83.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds