Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08999 * 109.47465 * 54.99953 * 3 2 1 5 5 O 1.42897 * 109.47071 * 294.99716 * 3 2 1 6 6 C 1.35902 * 116.99888 * 99.35776 * 5 3 2 7 7 C 1.38750 * 120.05801 * 354.40101 * 6 5 3 8 8 C 1.38122 * 119.95113 * 179.72344 * 7 6 5 9 9 C 1.38291 * 120.04842 * 0.27552 * 8 7 6 10 10 C 1.38235 * 120.11549 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.97573 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.05689 * 359.97438 * 10 9 8 13 13 C 1.50705 * 109.47337 * 175.00123 * 3 2 1 14 14 O 1.21273 * 119.99972 * 119.99478 * 13 3 2 15 15 N 1.34780 * 119.99448 * 299.99830 * 13 3 2 16 16 C 1.46497 * 120.00112 * 359.97438 * 15 13 3 17 17 C 1.46497 * 119.99682 * 179.97438 * 15 13 3 18 18 C 1.50707 * 109.46918 * 90.00477 * 17 15 13 19 19 H 1.08003 * 119.99557 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99985 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00196 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00159 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47072 * 90.00230 * 22 20 18 24 24 H 1.48496 * 109.47258 * 210.00357 * 22 20 18 25 25 H 1.48507 * 109.47039 * 330.00620 * 22 20 18 26 26 H 1.09003 * 109.47191 * 300.00107 * 1 2 3 27 27 H 1.09001 * 109.47327 * 60.00196 * 1 2 3 28 28 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47564 * 240.00174 * 2 1 3 30 30 H 1.09001 * 109.46875 * 119.99521 * 2 1 3 31 31 H 1.08005 * 120.02742 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.97702 * 180.30027 * 8 7 6 33 33 H 1.08001 * 119.94377 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47069 * 89.99481 * 11 10 9 35 35 H 1.08999 * 109.47243 * 209.99644 * 11 10 9 36 36 H 1.09004 * 109.46881 * 330.00041 * 11 10 9 37 37 H 1.07998 * 120.02986 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47081 * 90.00093 * 16 15 13 39 39 H 1.08996 * 109.47225 * 209.99623 * 16 15 13 40 40 H 1.08996 * 109.47684 * 329.99833 * 16 15 13 41 41 H 1.09000 * 109.47215 * 210.00027 * 17 15 13 42 42 H 1.08999 * 109.47256 * 330.00662 * 17 15 13 43 43 H 0.96996 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8839 -1.1839 7 6 -0.1991 2.9626 -0.0289 8 6 -1.3094 3.7833 0.0083 9 6 -1.6622 4.5219 -1.1063 10 6 -0.9055 4.4405 -2.2603 11 6 -1.2933 5.2463 -3.4734 12 6 0.2061 3.6209 -2.3026 13 6 3.5419 1.4444 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1297 0.8913 1.2032 16 6 3.3086 0.2887 2.2562 17 6 5.5897 0.8926 1.3233 18 6 6.0339 2.1438 2.0363 19 1 5.3018 2.8659 2.3665 20 6 7.3749 2.3671 2.2662 21 7 7.7626 3.4592 2.8879 22 14 8.6412 1.1184 1.6944 23 1 9.0767 1.4516 0.3144 24 1 9.8138 1.1502 2.6049 25 1 8.0394 -0.2392 1.7094 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.0759 2.3857 0.8418 32 1 -1.9022 3.8486 0.9086 33 1 -2.5310 5.1627 -1.0755 34 1 -0.8011 6.2182 -3.4365 35 1 -0.9851 4.7169 -4.3749 36 1 -2.3742 5.3867 -3.4859 37 1 0.7972 3.5580 -3.2042 38 1 3.1457 -0.7654 2.0316 39 1 3.8207 0.3811 3.2139 40 1 2.3484 0.8020 2.3067 41 1 5.9084 0.0184 1.8910 42 1 6.0361 0.8629 0.3294 43 1 8.7060 3.6161 3.0500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267220886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -39.534652 kcal Electronic energy + Delta-G solvation = -23601.848797 eV Core-core repulsion = 20226.978485 eV Total energy + Delta-G solvation = -3374.870312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68331 -39.09823 -37.44574 -35.16331 -33.74832 -32.61093 -32.40592 -30.22980 -28.94992 -27.20419 -27.02784 -25.87604 -22.69369 -22.55017 -22.45725 -20.63200 -18.77791 -18.22754 -16.96965 -16.56720 -16.08086 -15.82950 -15.52356 -15.14891 -14.72368 -14.43819 -13.96664 -13.88616 -13.63299 -13.35818 -13.22040 -12.95599 -12.59274 -12.43522 -12.37912 -12.20063 -12.09250 -11.91994 -11.71811 -11.63308 -11.48208 -11.08532 -10.97678 -10.72877 -10.54184 -10.50441 -10.16178 -9.57003 -9.02813 -8.82794 -8.61131 -8.10845 -7.79827 -6.10805 -4.10333 1.27276 1.43764 2.93809 3.18027 3.28191 3.34041 3.36214 3.72533 3.92941 4.37687 4.63393 4.68954 4.76149 4.78473 4.87171 5.00014 5.13704 5.18374 5.21767 5.28919 5.35643 5.45737 5.46816 5.47436 5.57819 5.63877 5.67373 5.77940 5.81265 5.96448 6.02443 6.03131 6.17453 6.32875 6.38584 6.52775 6.60979 6.75147 6.88786 7.22402 7.47196 7.57162 8.10985 8.43208 8.84029 8.92618 9.48698 11.02521 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.003895 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.855465 B = 7187.423681 C = 7726.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C 0.066 3.934 4 H 0.100 0.900 5 O -0.281 6.281 6 C 0.143 3.857 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.165 4.165 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.154 4.154 13 C 0.507 3.493 14 O -0.517 6.517 15 N -0.593 5.593 16 C 0.077 3.923 17 C 0.217 3.783 18 C -0.532 4.532 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.727 -4.565 -5.486 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.193 6.193 6 C 0.097 3.903 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.184 4.184 10 C -0.049 4.049 11 C -0.170 4.170 12 C -0.173 4.173 13 C 0.292 3.708 14 O -0.392 6.392 15 N -0.327 5.327 16 C -0.066 4.066 17 C 0.097 3.903 18 C -0.571 4.571 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.038 -4.253 -6.054 21.361 hybrid contribution 0.722 -0.495 0.203 0.899 sum -19.316 -4.748 -5.851 20.734 Atomic orbital electron populations 1.21917 0.94789 1.02144 1.02243 1.22251 0.97017 0.94630 1.04946 1.22447 0.94593 0.94795 0.87568 0.88272 1.86204 1.42031 1.58102 1.32937 1.19083 0.86493 0.90373 0.94316 1.21364 0.98779 1.05204 0.98410 1.20879 0.95701 0.94748 0.98061 1.20879 1.01520 1.02630 0.93337 1.19677 0.93839 0.95707 0.95717 1.20802 1.01647 0.99495 0.95105 1.20309 0.99256 0.99496 0.98254 1.19979 0.88380 0.79598 0.82876 1.90705 1.64665 1.43711 1.40078 1.47740 1.08798 1.57049 1.19096 1.21874 0.95256 0.96758 0.92738 1.19709 0.74780 0.97887 0.97949 1.21320 0.93481 1.04963 1.37289 0.90763 1.24855 0.98225 0.95362 0.94516 1.69892 1.16288 1.25652 1.41608 0.86843 0.81433 0.82118 0.79253 1.19835 1.21007 1.19026 0.92395 0.92178 0.92121 0.90291 0.88541 0.85096 0.85899 0.86184 0.90877 0.91365 0.91454 0.85193 0.92933 0.90131 0.92232 0.94879 0.94415 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.48 37.16 0.32 -1.21 16 2 C -0.15 -1.84 5.30 -26.73 -0.14 -1.98 16 3 C 0.07 1.05 1.74 -27.88 -0.05 1.00 16 4 H 0.10 1.43 4.68 -51.93 -0.24 1.18 16 5 O -0.28 -4.90 9.11 -39.34 -0.36 -5.26 16 6 C 0.14 2.15 5.65 -39.22 -0.22 1.93 16 7 C -0.22 -2.78 7.36 -39.43 -0.29 -3.07 16 8 C -0.08 -0.83 10.04 -39.60 -0.40 -1.23 16 9 C -0.17 -1.77 9.70 -39.56 -0.38 -2.15 16 10 C -0.05 -0.57 5.88 -104.64 -0.62 -1.18 16 11 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 12 C -0.15 -2.13 9.64 -39.43 -0.38 -2.51 16 13 C 0.51 10.76 7.15 -10.98 -0.08 10.68 16 14 O -0.52 -13.55 16.08 -14.35 -0.23 -13.78 16 15 N -0.59 -12.14 2.86 -182.96 -0.52 -12.66 16 16 C 0.08 1.12 8.81 59.85 0.53 1.65 16 17 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 18 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 19 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 20 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 21 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 22 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 26 H 0.06 0.50 6.73 -51.93 -0.35 0.15 16 27 H 0.06 0.67 6.53 -51.93 -0.34 0.33 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.03 4.45 -51.93 -0.23 0.80 16 31 H 0.13 1.49 4.27 -52.48 -0.22 1.26 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.05 0.61 6.86 -51.93 -0.36 0.25 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.71 6.06 -51.93 -0.31 0.39 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -35.45 342.39 -7.83 -43.28 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.17 Total: 0.37 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.82 Total: -7.06 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.25 Total: -39.62 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.59 Total: -19.04 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.45 -7.83 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267220886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.746 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds