Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08999 * 109.47465 * 54.99953 * 3 2 1 5 5 O 1.42897 * 109.47071 * 294.99716 * 3 2 1 6 6 C 1.35902 * 116.99888 * 99.35776 * 5 3 2 7 7 C 1.38750 * 120.05801 * 354.40101 * 6 5 3 8 8 C 1.38122 * 119.95113 * 179.72344 * 7 6 5 9 9 C 1.38291 * 120.04842 * 0.27552 * 8 7 6 10 10 C 1.38235 * 120.11549 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.97573 * 179.97438 * 10 9 8 12 12 C 1.38173 * 120.05689 * 359.97438 * 10 9 8 13 13 C 1.50705 * 109.47337 * 175.00123 * 3 2 1 14 14 O 1.21273 * 119.99972 * 119.99478 * 13 3 2 15 15 N 1.34780 * 119.99448 * 299.99830 * 13 3 2 16 16 C 1.46497 * 120.00112 * 359.97438 * 15 13 3 17 17 C 1.46497 * 119.99682 * 179.97438 * 15 13 3 18 18 C 1.50707 * 109.46918 * 90.00477 * 17 15 13 19 19 H 1.08003 * 119.99557 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99985 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00196 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00159 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47072 * 90.00230 * 22 20 18 24 24 H 1.48496 * 109.47258 * 210.00357 * 22 20 18 25 25 H 1.48507 * 109.47039 * 330.00620 * 22 20 18 26 26 H 1.09003 * 109.47191 * 300.00107 * 1 2 3 27 27 H 1.09001 * 109.47327 * 60.00196 * 1 2 3 28 28 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47564 * 240.00174 * 2 1 3 30 30 H 1.09001 * 109.46875 * 119.99521 * 2 1 3 31 31 H 1.08005 * 120.02742 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.97702 * 180.30027 * 8 7 6 33 33 H 1.08001 * 119.94377 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47069 * 89.99481 * 11 10 9 35 35 H 1.08999 * 109.47243 * 209.99644 * 11 10 9 36 36 H 1.09004 * 109.46881 * 330.00041 * 11 10 9 37 37 H 1.07998 * 120.02986 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47081 * 90.00093 * 16 15 13 39 39 H 1.08996 * 109.47225 * 209.99623 * 16 15 13 40 40 H 1.08996 * 109.47684 * 329.99833 * 16 15 13 41 41 H 1.09000 * 109.47215 * 210.00027 * 17 15 13 42 42 H 1.08999 * 109.47256 * 330.00662 * 17 15 13 43 43 H 0.96996 * 120.00389 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8839 -1.1839 7 6 -0.1991 2.9626 -0.0289 8 6 -1.3094 3.7833 0.0083 9 6 -1.6622 4.5219 -1.1063 10 6 -0.9055 4.4405 -2.2603 11 6 -1.2933 5.2463 -3.4734 12 6 0.2061 3.6209 -2.3026 13 6 3.5419 1.4444 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1297 0.8913 1.2032 16 6 3.3086 0.2887 2.2562 17 6 5.5897 0.8926 1.3233 18 6 6.0339 2.1438 2.0363 19 1 5.3018 2.8659 2.3665 20 6 7.3749 2.3671 2.2662 21 7 7.7626 3.4592 2.8879 22 14 8.6412 1.1184 1.6944 23 1 9.0767 1.4516 0.3144 24 1 9.8138 1.1502 2.6049 25 1 8.0394 -0.2392 1.7094 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.0759 2.3857 0.8418 32 1 -1.9022 3.8486 0.9086 33 1 -2.5310 5.1627 -1.0755 34 1 -0.8011 6.2182 -3.4365 35 1 -0.9851 4.7169 -4.3749 36 1 -2.3742 5.3867 -3.4859 37 1 0.7972 3.5580 -3.2042 38 1 3.1457 -0.7654 2.0316 39 1 3.8207 0.3811 3.2139 40 1 2.3484 0.8020 2.3067 41 1 5.9084 0.0184 1.8910 42 1 6.0361 0.8629 0.3294 43 1 8.7060 3.6161 3.0500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267220886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -62.081882 kcal Electronic energy + Delta-G solvation = -23602.826518 eV Core-core repulsion = 20226.978485 eV Total energy + Delta-G solvation = -3375.848033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89239 -40.45452 -38.59924 -36.85253 -35.16361 -34.30166 -33.43754 -31.21209 -30.72244 -28.45709 -27.86485 -27.35066 -24.48670 -23.53879 -23.41915 -21.81858 -20.25625 -19.35142 -19.15392 -17.96013 -17.37877 -16.96842 -16.67127 -16.57852 -16.35078 -15.54926 -15.39865 -14.98129 -14.80325 -14.55577 -14.43466 -14.14445 -14.00106 -13.74379 -13.66296 -13.31909 -13.29530 -12.98027 -12.93684 -12.84122 -12.63232 -12.50571 -12.41555 -12.08026 -11.99511 -11.78353 -11.69871 -11.44828 -10.86092 -10.65443 -9.74434 -9.51079 -9.11654 -8.36793 -6.42827 0.35927 0.47856 1.30964 1.36213 1.44021 1.57033 1.68043 2.29036 2.56839 2.79788 2.97607 3.38297 3.56250 3.73349 3.91192 3.93595 4.13085 4.20352 4.33286 4.38970 4.40025 4.45886 4.55116 4.59062 4.71395 4.75910 4.82357 4.86386 4.89038 4.91133 4.98025 5.06203 5.09796 5.24137 5.32112 5.39741 5.41541 5.49000 5.50711 5.64768 5.86493 6.18468 6.37633 6.55509 6.58452 7.14558 7.27550 8.80216 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.003895 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.855465 B = 7187.423681 C = 7726.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.077 3.923 4 H 0.116 0.884 5 O -0.313 6.313 6 C 0.112 3.888 7 C -0.225 4.225 8 C -0.075 4.075 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.113 4.113 12 C -0.181 4.181 13 C 0.493 3.507 14 O -0.584 6.584 15 N -0.597 5.597 16 C 0.066 3.934 17 C 0.223 3.777 18 C -0.541 4.541 19 H 0.027 0.973 20 C 0.011 3.989 21 N -0.945 5.945 22 Si 0.949 3.051 23 H -0.279 1.279 24 H -0.273 1.273 25 H -0.233 1.233 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.208 -6.367 -4.649 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.017 3.983 4 H 0.134 0.866 5 O -0.227 6.227 6 C 0.067 3.933 7 C -0.243 4.243 8 C -0.093 4.093 9 C -0.181 4.181 10 C -0.053 4.053 11 C -0.169 4.169 12 C -0.200 4.200 13 C 0.281 3.719 14 O -0.464 6.464 15 N -0.329 5.329 16 C -0.075 4.075 17 C 0.101 3.899 18 C -0.579 4.579 19 H 0.046 0.954 20 C -0.187 4.187 21 N -0.584 5.584 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.198 1.198 25 H -0.156 1.156 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.173 0.827 33 H 0.169 0.831 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.581 -6.088 -5.177 23.954 hybrid contribution 1.383 0.207 -0.049 1.399 sum -21.199 -5.881 -5.226 22.611 Atomic orbital electron populations 1.21877 0.92595 1.03586 1.02304 1.22266 0.98736 0.91661 1.05308 1.22448 0.90405 0.97460 0.87973 0.86636 1.86150 1.43616 1.59176 1.33711 1.19392 0.86718 0.91293 0.95873 1.21543 0.99093 1.05824 0.97814 1.21306 0.95067 0.93556 0.99345 1.21315 1.01911 1.02259 0.92643 1.20051 0.92887 0.95049 0.97330 1.20868 1.03128 0.99093 0.93858 1.20511 1.00602 1.00856 0.98019 1.21070 0.90783 0.78088 0.81998 1.90655 1.66668 1.46578 1.42489 1.47831 1.07886 1.56867 1.20332 1.22296 0.95469 0.99130 0.90648 1.19412 0.77652 0.96530 0.96274 1.21556 0.93005 1.05899 1.37484 0.95426 1.25872 1.00726 0.97682 0.94418 1.70045 1.17099 1.28071 1.43230 0.85706 0.78450 0.80604 0.78136 1.20522 1.19768 1.15613 0.90653 0.93818 0.89915 0.91584 0.86424 0.83900 0.82714 0.83122 0.90419 0.91239 0.89168 0.86363 0.88823 0.90625 0.89331 0.92102 0.96533 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.48 71.98 0.61 -1.88 16 2 C -0.14 -3.20 5.30 30.59 0.16 -3.04 16 3 C 0.08 2.44 1.74 29.85 0.05 2.49 16 4 H 0.12 3.20 4.68 -2.39 -0.01 3.19 16 5 O -0.31 -11.41 9.11 -73.40 -0.67 -12.07 16 6 C 0.11 3.43 5.65 22.51 0.13 3.56 16 7 C -0.22 -5.38 7.36 22.36 0.16 -5.22 16 8 C -0.07 -1.43 10.04 22.25 0.22 -1.21 16 9 C -0.16 -3.05 9.70 22.28 0.22 -2.84 16 10 C -0.05 -1.16 5.88 -19.88 -0.12 -1.28 16 11 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 12 C -0.18 -5.18 9.64 22.37 0.22 -4.96 16 13 C 0.49 21.51 7.15 87.66 0.63 22.14 16 14 O -0.58 -32.48 16.08 16.03 0.26 -32.22 16 15 N -0.60 -24.34 2.86 -851.14 -2.43 -26.77 16 16 C 0.07 1.74 8.81 127.77 1.13 2.87 16 17 C 0.22 10.96 4.23 85.64 0.36 11.32 16 18 C -0.54 -32.27 9.94 25.60 0.25 -32.02 16 19 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 20 C 0.01 0.67 5.47 84.65 0.46 1.13 16 21 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 22 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.23 -9.69 6.54 99.48 0.65 -9.04 16 26 H 0.07 1.02 6.73 -2.39 -0.02 1.00 16 27 H 0.04 0.91 6.53 -2.39 -0.02 0.89 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 2.08 4.45 -2.39 -0.01 2.07 16 31 H 0.14 2.92 4.27 -2.91 -0.01 2.90 16 32 H 0.16 1.94 8.06 -2.92 -0.02 1.91 16 33 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.09 0.97 8.09 -2.38 -0.02 0.95 16 37 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.09 1.76 6.86 -2.39 -0.02 1.75 16 39 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 40 H 0.09 1.83 6.06 -2.39 -0.01 1.81 16 41 H 0.06 2.65 7.13 -2.39 -0.02 2.63 16 42 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -84.07 342.39 5.49 -78.58 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.95 Total: 15.93 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.20 Total: -9.97 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -2.13 Total: -86.81 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.41 Total: -44.30 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -84.07 5.49 -78.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267220886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.496 kcal (2) G-P(sol) polarization free energy of solvation -84.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds