Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47467 * 2 1 4 4 H 1.08997 * 109.47175 * 305.91133 * 3 2 1 5 5 O 1.42904 * 109.47167 * 65.91253 * 3 2 1 6 6 C 1.35898 * 117.00000 * 263.19230 * 5 3 2 7 7 C 1.38759 * 120.05532 * 356.50583 * 6 5 3 8 8 C 1.38122 * 119.94496 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.05529 * 359.97438 * 8 7 6 10 10 C 1.38250 * 120.11169 * 0.04354 * 9 8 7 11 11 C 1.50699 * 119.97041 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05473 * 359.67937 * 10 9 8 13 13 C 1.50695 * 109.47275 * 185.90922 * 3 2 1 14 14 O 1.21277 * 120.00353 * 253.56156 * 13 3 2 15 15 N 1.34780 * 120.00069 * 73.56442 * 13 3 2 16 16 C 1.46507 * 119.99509 * 5.31971 * 15 13 3 17 17 C 1.46492 * 120.00689 * 185.32441 * 15 13 3 18 18 C 1.50705 * 109.47520 * 89.99432 * 17 15 13 19 19 H 1.08003 * 119.99345 * 0.02562 * 18 17 15 20 20 C 1.37868 * 120.00252 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46833 * 90.00092 * 22 20 18 24 24 H 1.48502 * 109.47154 * 209.99715 * 22 20 18 25 25 H 1.48497 * 109.46812 * 329.99829 * 22 20 18 26 26 H 1.09006 * 109.47016 * 59.99438 * 1 2 3 27 27 H 1.09003 * 109.46647 * 300.00052 * 1 2 3 28 28 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47016 * 120.00562 * 2 1 3 30 30 H 1.09003 * 109.46647 * 239.99948 * 2 1 3 31 31 H 1.07998 * 120.03048 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.97137 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.94530 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47221 * 90.00171 * 11 10 9 35 35 H 1.09001 * 109.47045 * 210.00181 * 11 10 9 36 36 H 1.08999 * 109.47322 * 329.99954 * 11 10 9 37 37 H 1.08001 * 120.02865 * 180.29695 * 12 10 9 38 38 H 1.08996 * 109.47254 * 92.06321 * 16 15 13 39 39 H 1.09004 * 109.46928 * 212.05658 * 16 15 13 40 40 H 1.09001 * 109.47227 * 332.05620 * 16 15 13 41 41 H 1.09000 * 109.47587 * 209.99720 * 17 15 13 42 42 H 1.09008 * 109.46827 * 329.99660 * 17 15 13 43 43 H 0.96995 * 120.00163 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5929 1.9859 -0.8323 5 8 1.6804 2.0748 1.2300 6 6 0.5539 2.8349 1.2266 7 6 -0.1504 3.0284 0.0468 8 6 -1.2954 3.8009 0.0461 9 6 -1.7403 4.3808 1.2200 10 6 -1.0403 4.1898 2.3968 11 6 -1.5277 4.8237 3.6741 12 6 0.1025 3.4133 2.4038 13 6 3.5399 1.4449 -0.1463 14 8 4.2418 1.7083 0.8070 15 7 4.1014 1.1544 -1.3366 16 6 3.2554 0.9508 -2.5153 17 6 5.5574 1.0420 -1.4519 18 6 5.9736 -0.3829 -1.1921 19 1 5.2278 -1.1302 -0.9644 20 6 7.3062 -0.7326 -1.2452 21 7 8.2143 0.1776 -1.5220 22 14 7.8219 -2.4990 -0.9240 23 1 7.8292 -3.2530 -2.2033 24 1 9.1832 -2.5172 -0.3310 25 1 6.8632 -3.1310 0.0177 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 0.1960 2.5748 -0.8700 32 1 -1.8436 3.9521 -0.8720 33 1 -2.6361 4.9841 1.2175 34 1 -2.2088 4.1408 4.1817 35 1 -0.6771 5.0366 4.3216 36 1 -2.0496 5.7522 3.4428 37 1 0.6464 3.2604 3.3243 38 1 3.1359 1.8961 -3.0444 39 1 3.7230 0.2211 -3.1764 40 1 2.2781 0.5835 -2.2021 41 1 5.8661 1.3334 -2.4558 42 1 6.0314 1.6978 -0.7214 43 1 9.1518 -0.0685 -1.5597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267220888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = -47.331400 kcal Electronic energy + Delta-G solvation = -23546.331210 eV Core-core repulsion = 20171.122806 eV Total energy + Delta-G solvation = -3375.208404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65658 -39.01519 -37.42338 -34.94989 -33.68175 -32.63432 -32.49266 -30.25316 -28.45155 -27.14850 -26.94719 -25.64659 -22.94750 -22.62798 -22.44248 -20.66619 -18.68643 -18.23879 -16.56561 -16.46717 -16.09220 -15.78495 -15.57474 -15.02542 -14.63282 -14.28622 -14.21732 -13.92730 -13.65688 -13.28481 -13.13974 -12.88571 -12.58967 -12.34843 -12.19080 -12.08883 -11.98450 -11.85492 -11.68256 -11.57892 -11.26003 -11.12726 -10.92456 -10.81858 -10.59246 -10.42808 -10.17905 -9.66615 -8.93005 -8.86190 -8.46270 -8.11857 -7.72007 -6.07013 -4.12446 1.23381 1.40921 2.98596 3.22926 3.28548 3.35733 3.40540 3.67456 4.04688 4.41909 4.62346 4.72858 4.74715 4.86406 4.90406 5.01944 5.15914 5.20770 5.25817 5.27627 5.40568 5.41519 5.43446 5.51268 5.59601 5.65827 5.76067 5.83283 5.91111 5.98719 6.05134 6.09442 6.24848 6.32197 6.35590 6.49519 6.70957 6.97492 7.39942 7.42233 7.51733 7.89043 8.18870 8.29978 8.84451 8.99775 9.52796 11.01123 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.003512 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.744024 B = 7970.528564 C = 8125.535202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.064 3.936 4 H 0.095 0.905 5 O -0.280 6.280 6 C 0.144 3.856 7 C -0.220 4.220 8 C -0.075 4.075 9 C -0.167 4.167 10 C -0.048 4.048 11 C -0.114 4.114 12 C -0.157 4.157 13 C 0.507 3.493 14 O -0.519 6.519 15 N -0.598 5.598 16 C 0.072 3.928 17 C 0.246 3.754 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.811 5.667 1.479 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.004 3.996 4 H 0.113 0.887 5 O -0.192 6.192 6 C 0.098 3.902 7 C -0.239 4.239 8 C -0.093 4.093 9 C -0.185 4.185 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.175 4.175 13 C 0.291 3.709 14 O -0.394 6.394 15 N -0.332 5.332 16 C -0.072 4.072 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.059 5.794 2.124 21.945 hybrid contribution 0.348 -1.066 -0.267 1.153 sum -20.711 4.727 1.858 21.325 Atomic orbital electron populations 1.21885 0.94817 1.02197 1.02059 1.22013 0.96624 0.94389 1.04791 1.22540 0.95172 0.94918 0.86957 0.88732 1.86257 1.39002 1.60278 1.33691 1.19112 0.86213 0.90761 0.94078 1.21300 0.99025 1.05809 0.97755 1.20870 0.95140 0.95289 0.98004 1.20875 1.01362 1.03834 0.92466 1.19678 0.93777 0.95771 0.95629 1.20800 1.01627 1.00225 0.94422 1.20307 0.98407 1.01889 0.96915 1.19902 0.88199 0.78859 0.83927 1.90697 1.63241 1.47333 1.38148 1.48075 1.09911 1.68349 1.06822 1.21845 0.94794 1.01158 0.89354 1.19343 0.72162 0.97716 0.98091 1.21425 0.92525 0.94358 1.48514 0.92372 1.24940 0.96339 0.97770 0.95025 1.69933 1.01345 1.33279 1.48678 0.86484 0.78042 0.84464 0.78374 1.20611 1.21037 1.19844 0.92544 0.92288 0.92056 0.89943 0.89142 0.85187 0.85939 0.86215 0.90994 0.91287 0.91419 0.85183 0.93451 0.90313 0.92133 0.94708 0.93611 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.56 37.16 0.32 -1.36 16 2 C -0.14 -1.97 5.22 -26.73 -0.14 -2.11 16 3 C 0.06 1.05 1.70 -27.89 -0.05 1.00 16 4 H 0.10 1.29 4.38 -51.93 -0.23 1.06 16 5 O -0.28 -4.92 9.21 -38.96 -0.36 -5.28 16 6 C 0.14 2.10 5.37 -39.21 -0.21 1.89 16 7 C -0.22 -2.67 7.49 -39.43 -0.30 -2.96 16 8 C -0.07 -0.77 10.04 -39.61 -0.40 -1.17 16 9 C -0.17 -1.68 9.70 -39.56 -0.38 -2.06 16 10 C -0.05 -0.53 5.88 -104.65 -0.62 -1.14 16 11 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 12 C -0.16 -2.07 9.64 -39.43 -0.38 -2.45 16 13 C 0.51 11.01 6.97 -10.99 -0.08 10.94 16 14 O -0.52 -13.90 16.11 -13.98 -0.23 -14.12 16 15 N -0.60 -12.70 2.86 -182.95 -0.52 -13.22 16 16 C 0.07 1.11 9.85 59.85 0.59 1.70 16 17 C 0.25 6.44 5.21 -5.20 -0.03 6.42 16 18 C -0.53 -14.93 9.39 -34.44 -0.32 -15.26 16 19 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 26 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 27 H 0.06 0.71 6.50 -51.93 -0.34 0.37 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.21 6.20 -51.93 -0.32 0.89 16 31 H 0.13 1.41 4.81 -52.49 -0.25 1.16 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 40 H 0.06 0.74 4.59 -51.93 -0.24 0.50 16 41 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.05 1.37 7.36 -51.92 -0.38 0.98 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -34.14 349.00 -8.17 -42.32 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.31 Total: -0.42 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.73 Total: -5.46 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.21 Total: -39.05 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.58 Total: -19.41 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.14 -8.17 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267220888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.014 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds