Wall clock time and date at job start Tue Mar 31 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47467 * 2 1 4 4 H 1.08997 * 109.47175 * 305.91133 * 3 2 1 5 5 O 1.42904 * 109.47167 * 65.91253 * 3 2 1 6 6 C 1.35898 * 117.00000 * 263.19230 * 5 3 2 7 7 C 1.38759 * 120.05532 * 356.50583 * 6 5 3 8 8 C 1.38122 * 119.94496 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.05529 * 359.97438 * 8 7 6 10 10 C 1.38250 * 120.11169 * 0.04354 * 9 8 7 11 11 C 1.50699 * 119.97041 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05473 * 359.67937 * 10 9 8 13 13 C 1.50695 * 109.47275 * 185.90922 * 3 2 1 14 14 O 1.21277 * 120.00353 * 253.56156 * 13 3 2 15 15 N 1.34780 * 120.00069 * 73.56442 * 13 3 2 16 16 C 1.46507 * 119.99509 * 5.31971 * 15 13 3 17 17 C 1.46492 * 120.00689 * 185.32441 * 15 13 3 18 18 C 1.50705 * 109.47520 * 89.99432 * 17 15 13 19 19 H 1.08003 * 119.99345 * 0.02562 * 18 17 15 20 20 C 1.37868 * 120.00252 * 180.02562 * 18 17 15 21 21 N 1.31520 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46833 * 90.00092 * 22 20 18 24 24 H 1.48502 * 109.47154 * 209.99715 * 22 20 18 25 25 H 1.48497 * 109.46812 * 329.99829 * 22 20 18 26 26 H 1.09006 * 109.47016 * 59.99438 * 1 2 3 27 27 H 1.09003 * 109.46647 * 300.00052 * 1 2 3 28 28 H 1.08996 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47016 * 120.00562 * 2 1 3 30 30 H 1.09003 * 109.46647 * 239.99948 * 2 1 3 31 31 H 1.07998 * 120.03048 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.97137 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.94530 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47221 * 90.00171 * 11 10 9 35 35 H 1.09001 * 109.47045 * 210.00181 * 11 10 9 36 36 H 1.08999 * 109.47322 * 329.99954 * 11 10 9 37 37 H 1.08001 * 120.02865 * 180.29695 * 12 10 9 38 38 H 1.08996 * 109.47254 * 92.06321 * 16 15 13 39 39 H 1.09004 * 109.46928 * 212.05658 * 16 15 13 40 40 H 1.09001 * 109.47227 * 332.05620 * 16 15 13 41 41 H 1.09000 * 109.47587 * 209.99720 * 17 15 13 42 42 H 1.09008 * 109.46827 * 329.99660 * 17 15 13 43 43 H 0.96995 * 120.00163 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5929 1.9859 -0.8323 5 8 1.6804 2.0748 1.2300 6 6 0.5539 2.8349 1.2266 7 6 -0.1504 3.0284 0.0468 8 6 -1.2954 3.8009 0.0461 9 6 -1.7403 4.3808 1.2200 10 6 -1.0403 4.1898 2.3968 11 6 -1.5277 4.8237 3.6741 12 6 0.1025 3.4133 2.4038 13 6 3.5399 1.4449 -0.1463 14 8 4.2418 1.7083 0.8070 15 7 4.1014 1.1544 -1.3366 16 6 3.2554 0.9508 -2.5153 17 6 5.5574 1.0420 -1.4519 18 6 5.9736 -0.3829 -1.1921 19 1 5.2278 -1.1302 -0.9644 20 6 7.3062 -0.7326 -1.2452 21 7 8.2143 0.1776 -1.5220 22 14 7.8219 -2.4990 -0.9240 23 1 7.8292 -3.2530 -2.2033 24 1 9.1832 -2.5172 -0.3310 25 1 6.8632 -3.1310 0.0177 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 0.1960 2.5748 -0.8700 32 1 -1.8436 3.9521 -0.8720 33 1 -2.6361 4.9841 1.2175 34 1 -2.2088 4.1408 4.1817 35 1 -0.6771 5.0366 4.3216 36 1 -2.0496 5.7522 3.4428 37 1 0.6464 3.2604 3.3243 38 1 3.1359 1.8961 -3.0444 39 1 3.7230 0.2211 -3.1764 40 1 2.2781 0.5835 -2.2021 41 1 5.8661 1.3334 -2.4558 42 1 6.0314 1.6978 -0.7214 43 1 9.1518 -0.0685 -1.5597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267220888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:16 Heat of formation + Delta-G solvation = -67.786736 kcal Electronic energy + Delta-G solvation = -23547.218220 eV Core-core repulsion = 20171.122806 eV Total energy + Delta-G solvation = -3376.095414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86388 -40.40346 -38.58714 -36.74700 -35.12973 -34.34213 -33.41566 -31.20160 -30.22160 -28.37910 -27.85308 -27.24613 -24.86281 -23.52966 -23.43255 -21.84944 -20.18885 -19.34199 -18.70892 -17.94638 -17.34568 -16.91623 -16.76679 -16.62735 -16.06417 -15.91471 -15.31803 -14.83209 -14.66868 -14.58067 -14.20963 -14.13788 -13.92929 -13.74481 -13.50624 -13.29363 -13.16466 -13.04978 -12.88190 -12.85280 -12.65199 -12.56230 -12.45906 -12.24256 -12.04113 -11.81470 -11.73619 -11.44860 -10.66453 -10.61176 -9.72502 -9.52838 -9.09325 -8.25234 -6.40505 0.38192 0.50952 1.35334 1.39021 1.48556 1.58783 1.69808 2.35752 2.61389 2.82240 3.04782 3.42578 3.52852 3.71921 3.93492 3.95951 4.11630 4.24079 4.29134 4.35974 4.40931 4.47349 4.58160 4.64040 4.71432 4.84592 4.87906 4.88985 4.93608 4.97677 5.03971 5.07475 5.18132 5.26353 5.29802 5.40908 5.49481 5.51687 5.67142 5.76115 5.89597 6.01178 6.40116 6.61935 6.68974 7.20230 7.34989 8.82406 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.003512 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.744024 B = 7970.528564 C = 8125.535202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.079 3.921 4 H 0.128 0.872 5 O -0.316 6.316 6 C 0.113 3.887 7 C -0.224 4.224 8 C -0.071 4.071 9 C -0.163 4.163 10 C -0.052 4.052 11 C -0.114 4.114 12 C -0.182 4.182 13 C 0.494 3.506 14 O -0.587 6.587 15 N -0.601 5.601 16 C 0.064 3.936 17 C 0.258 3.742 18 C -0.545 4.545 19 H 0.057 0.943 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.970 3.030 23 H -0.260 1.260 24 H -0.282 1.282 25 H -0.273 1.273 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.031 0.969 42 H -0.005 1.005 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.304 5.228 -0.098 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.020 3.980 4 H 0.145 0.855 5 O -0.229 6.229 6 C 0.068 3.932 7 C -0.242 4.242 8 C -0.089 4.089 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.170 4.170 12 C -0.200 4.200 13 C 0.281 3.719 14 O -0.467 6.467 15 N -0.333 5.333 16 C -0.078 4.078 17 C 0.137 3.863 18 C -0.584 4.584 19 H 0.075 0.925 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.161 0.839 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.609 5.355 0.502 25.190 hybrid contribution 1.369 -0.807 0.248 1.608 sum -23.241 4.549 0.751 23.694 Atomic orbital electron populations 1.21830 0.91841 1.03517 1.02727 1.22027 0.99038 0.92435 1.03948 1.22427 0.90625 0.96855 0.88107 0.85455 1.86205 1.40980 1.61460 1.34259 1.19409 0.86210 0.91888 0.95704 1.21463 0.99444 1.06240 0.97043 1.21296 0.94296 0.93822 0.99469 1.21312 1.01831 1.03147 0.91829 1.20032 0.92786 0.94896 0.97457 1.20866 1.01842 1.01133 0.93162 1.20480 0.99786 1.03330 0.96453 1.21014 0.90753 0.77205 0.82914 1.90649 1.65398 1.50316 1.40356 1.48071 1.08614 1.67721 1.08865 1.22216 0.95292 1.02962 0.87292 1.18827 0.75450 0.95975 0.96009 1.21700 0.92992 0.95038 1.48647 0.92468 1.25890 0.96328 1.02450 0.94532 1.70057 1.01782 1.35557 1.49411 0.85382 0.77371 0.78930 0.78933 1.18457 1.20770 1.19747 0.89962 0.93466 0.90402 0.92655 0.88154 0.83882 0.82553 0.83143 0.89795 0.91701 0.89445 0.86559 0.90655 0.90399 0.88419 0.95105 0.98670 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.56 71.98 0.62 -2.14 16 2 C -0.14 -3.71 5.22 30.59 0.16 -3.55 16 3 C 0.08 2.58 1.70 29.84 0.05 2.63 16 4 H 0.13 3.18 4.38 -2.39 -0.01 3.17 16 5 O -0.32 -11.52 9.21 -73.73 -0.68 -12.20 16 6 C 0.11 3.27 5.37 22.51 0.12 3.39 16 7 C -0.22 -4.86 7.49 22.37 0.17 -4.69 16 8 C -0.07 -1.18 10.04 22.25 0.22 -0.96 16 9 C -0.16 -2.69 9.70 22.28 0.22 -2.48 16 10 C -0.05 -1.04 5.88 -19.88 -0.12 -1.15 16 11 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 12 C -0.18 -4.90 9.64 22.36 0.22 -4.68 16 13 C 0.49 22.34 6.97 87.65 0.61 22.95 16 14 O -0.59 -33.82 16.11 15.66 0.25 -33.57 16 15 N -0.60 -26.06 2.86 -851.12 -2.43 -28.49 16 16 C 0.06 1.83 9.85 127.77 1.26 3.09 16 17 C 0.26 14.23 5.21 85.64 0.45 14.67 16 18 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 19 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 20 C 0.01 0.41 5.46 84.65 0.46 0.87 16 21 N -0.93 -56.76 13.29 21.44 0.28 -56.48 16 22 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 H 0.08 1.17 7.17 -2.38 -0.02 1.16 16 27 H 0.05 1.05 6.50 -2.39 -0.02 1.03 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.10 2.48 6.20 -2.39 -0.01 2.46 16 31 H 0.14 2.58 4.81 -2.91 -0.01 2.56 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.09 0.87 8.08 -2.39 -0.02 0.86 16 37 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.28 8.09 -2.38 -0.02 2.26 16 40 H 0.10 2.06 4.59 -2.39 -0.01 2.05 16 41 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 42 H 0.00 -0.31 7.36 -2.38 -0.02 -0.33 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.69 349.00 5.84 -74.85 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.00 Total: 13.09 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 5.38 Total: -4.34 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.15 Total: -84.96 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.43 Total: -45.77 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -80.69 5.84 -74.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267220888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.059 kcal (2) G-P(sol) polarization free energy of solvation -80.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds