Wall clock time and date at job start Tue Mar 31 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47112 * 55.00582 * 3 2 1 5 5 C 1.53001 * 109.46984 * 175.00487 * 3 2 1 6 6 O 1.42902 * 109.47307 * 295.00147 * 3 2 1 7 7 C 1.35712 * 116.99933 * 155.14970 * 6 3 2 8 8 C 1.39006 * 119.90713 * 5.33049 * 7 6 3 9 9 C 1.37688 * 120.09788 * 179.97438 * 8 7 6 10 10 C 1.39796 * 119.90296 * 0.02562 * 9 8 7 11 11 C 1.47489 * 120.09667 * 179.97438 * 10 9 8 12 12 O 1.21623 * 120.00259 * 336.84162 * 11 10 9 13 13 N 1.34781 * 120.00263 * 156.83574 * 11 10 9 14 14 C 1.36903 * 119.99922 * 202.09543 * 13 11 10 15 15 H 1.07998 * 120.00261 * 327.29883 * 14 13 11 16 16 C 1.39025 * 119.99805 * 147.29948 * 14 13 11 17 17 N 1.31379 * 119.99961 * 10.96433 * 16 14 13 18 18 Si 1.86793 * 120.00096 * 190.95868 * 16 14 13 19 19 H 1.48504 * 109.47230 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46922 * 120.00120 * 18 16 14 21 21 H 1.48498 * 109.47488 * 239.99945 * 18 16 14 22 22 C 1.46499 * 119.99805 * 22.10118 * 13 11 10 23 23 C 1.53006 * 109.46838 * 290.73114 * 22 13 11 24 24 C 1.39806 * 119.81321 * 0.27515 * 10 9 8 25 25 C 1.37688 * 119.89935 * 359.44252 * 24 10 9 26 26 H 1.09000 * 109.46865 * 299.99525 * 1 2 3 27 27 H 1.08998 * 109.47592 * 59.99805 * 1 2 3 28 28 H 1.08999 * 109.47550 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46865 * 240.00475 * 2 1 3 30 30 H 1.08998 * 109.47592 * 120.00195 * 2 1 3 31 31 H 1.09002 * 109.47176 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47049 * 300.00210 * 5 3 2 33 33 H 1.09001 * 109.47119 * 60.00099 * 5 3 2 34 34 H 1.08002 * 119.95437 * 0.02562 * 8 7 6 35 35 H 1.07996 * 120.05112 * 179.97438 * 9 8 7 36 36 H 0.97004 * 120.00588 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.47590 * 50.73008 * 22 13 11 38 38 H 1.09004 * 109.47110 * 170.73454 * 22 13 11 39 39 H 1.08997 * 109.46988 * 22.70212 * 23 22 13 40 40 H 1.09000 * 109.47311 * 142.71096 * 23 22 13 41 41 H 1.09008 * 109.46790 * 262.70772 * 23 22 13 42 42 H 1.08003 * 120.04839 * 179.71064 * 24 10 9 43 43 H 1.08003 * 119.94959 * 180.28309 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 8 1.6619 2.0815 -1.2210 7 6 1.5552 3.4342 -1.2012 8 6 1.9168 4.1413 -0.0603 9 6 1.8107 5.5139 -0.0361 10 6 1.3380 6.1963 -1.1608 11 6 1.2220 7.6665 -1.1393 12 8 1.1212 8.2531 -0.0787 13 7 1.2280 8.3600 -2.2950 14 6 1.5725 9.6849 -2.2965 15 1 1.3349 10.3057 -1.4452 16 6 2.2282 10.2314 -3.3938 17 7 2.3269 9.5443 -4.5093 18 14 2.9689 11.9426 -3.2823 19 1 2.7238 12.5009 -1.9283 20 1 4.4314 11.8659 -3.5282 21 1 2.3411 12.8212 -4.3017 22 6 0.8656 7.6959 -3.5496 23 6 1.9559 6.6914 -3.9283 24 6 0.9695 5.4808 -2.3040 25 6 1.0843 4.1088 -2.3217 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9281 2.4720 0.1261 32 1 3.8532 0.9570 1.0569 33 1 3.9994 0.9053 -0.7163 34 1 2.2823 3.6134 0.8081 35 1 2.0914 6.0624 0.8509 36 1 2.7847 9.9254 -5.2749 37 1 -0.0822 7.1728 -3.4233 38 1 0.7673 8.4405 -4.3396 39 1 2.5130 6.4063 -3.0359 40 1 1.4972 5.8062 -4.3688 41 1 2.6342 7.1465 -4.6502 42 1 0.5994 6.0038 -3.1735 43 1 0.8042 3.5557 -3.2060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267325543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:10 Heat of formation + Delta-G solvation = 13.372149 kcal Electronic energy + Delta-G solvation = -23800.237689 eV Core-core repulsion = 20427.661588 eV Total energy + Delta-G solvation = -3372.576101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39103 -39.21143 -36.79052 -35.43711 -34.22622 -32.51681 -30.91433 -30.29047 -29.52439 -28.75789 -25.21361 -24.12218 -22.85581 -22.70682 -21.89286 -20.59333 -19.35944 -18.15339 -17.11837 -16.46453 -15.72990 -15.21575 -15.05409 -14.80863 -14.26460 -14.09362 -13.78559 -13.63365 -13.54368 -13.39422 -13.26914 -12.91424 -12.38932 -12.31151 -11.98554 -11.84102 -11.67779 -11.34383 -11.22899 -11.20558 -11.14110 -11.05101 -10.66946 -10.55400 -10.33387 -10.24438 -9.95916 -9.83070 -8.91859 -8.55980 -8.34670 -7.68192 -7.55664 -6.28961 -3.94558 1.58370 1.82437 3.16283 3.25507 3.28176 3.32574 3.74295 4.11199 4.49356 4.53115 4.72264 4.82564 4.85408 5.05416 5.06496 5.20744 5.24603 5.31881 5.37643 5.46239 5.64050 5.68315 5.72195 5.77198 5.81949 5.91882 5.97014 6.00739 6.05375 6.11723 6.32370 6.42992 6.55072 6.58741 6.66727 6.79168 7.00831 7.10687 7.28024 7.42736 7.59780 7.68680 8.21957 8.55092 9.14151 9.38486 9.93254 10.66608 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.003668 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.333810 B = 7630.822316 C = 7856.366364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.181 4.181 6 O -0.310 6.310 7 C 0.136 3.864 8 C -0.232 4.232 9 C -0.034 4.034 10 C -0.154 4.154 11 C 0.505 3.495 12 O -0.582 6.582 13 N -0.446 5.446 14 C -0.301 4.301 15 H 0.097 0.903 16 C 0.034 3.966 17 N -0.877 5.877 18 Si 0.925 3.075 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.100 3.900 23 C -0.163 4.163 24 C -0.084 4.084 25 C -0.179 4.179 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.267 0.733 37 H 0.034 0.966 38 H 0.132 0.868 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.190 0.810 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -16.576 2.953 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.224 6.224 7 C 0.091 3.909 8 C -0.251 4.251 9 C -0.053 4.053 10 C -0.157 4.157 11 C 0.295 3.705 12 O -0.467 6.467 13 N -0.165 5.165 14 C -0.429 4.429 15 H 0.114 0.886 16 C -0.169 4.169 17 N -0.517 5.517 18 Si 0.752 3.248 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.023 4.023 23 C -0.220 4.220 24 C -0.101 4.101 25 C -0.197 4.197 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.149 0.851 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.206 0.794 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.485 -16.338 3.112 16.639 hybrid contribution 0.685 0.665 0.145 0.966 sum 0.200 -15.673 3.257 16.009 Atomic orbital electron populations 1.21761 0.95149 1.01647 1.02589 1.21617 0.96843 0.94116 1.02920 1.22457 0.94933 0.93747 0.86564 0.90843 1.22384 0.95442 1.03413 1.02615 1.86033 1.83836 1.17329 1.35208 1.19172 0.95287 0.81832 0.94643 1.21035 1.10556 0.94994 0.98492 1.20948 0.94416 0.92725 0.97245 1.20278 1.05517 0.95033 0.94897 1.18052 0.82053 0.85853 0.84583 1.90586 1.54049 1.71208 1.30843 1.43398 1.58830 1.09398 1.04894 1.19657 1.33768 0.85026 1.04403 0.88551 1.25421 0.96192 1.00110 0.95131 1.69711 1.41613 1.38140 1.02205 0.85878 0.78872 0.81500 0.78562 1.19233 1.20626 1.20801 1.22017 0.92993 0.97049 0.90235 1.22711 1.00290 0.97113 1.01926 1.23517 0.94072 0.93324 0.99175 1.20312 1.07747 0.93927 0.97757 0.92805 0.91803 0.92625 0.90906 0.90323 0.91490 0.91285 0.91552 0.85797 0.85468 0.92202 0.94810 0.85060 0.92187 0.93702 0.91113 0.79406 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.99 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.85 2.22 -26.73 -0.06 0.79 16 4 H 0.07 0.78 6.30 -51.93 -0.33 0.46 16 5 C -0.18 -1.75 9.16 37.16 0.34 -1.41 16 6 O -0.31 -4.31 9.32 -18.84 -0.18 -4.48 16 7 C 0.14 2.16 6.61 -39.01 -0.26 1.90 16 8 C -0.23 -3.71 8.21 -39.50 -0.32 -4.04 16 9 C -0.03 -0.65 9.58 -39.20 -0.38 -1.02 16 10 C -0.15 -3.26 4.92 -104.96 -0.52 -3.78 16 11 C 0.50 12.94 7.17 -12.49 -0.09 12.85 16 12 O -0.58 -16.65 16.46 5.26 0.09 -16.56 16 13 N -0.45 -11.51 2.70 -121.23 -0.33 -11.84 16 14 C -0.30 -8.30 9.21 -15.00 -0.14 -8.43 16 15 H 0.10 2.79 7.51 -52.49 -0.39 2.40 16 16 C 0.03 0.87 5.40 -17.45 -0.09 0.78 16 17 N -0.88 -22.06 9.03 55.50 0.50 -21.56 16 18 Si 0.93 20.49 29.57 -169.99 -5.03 15.46 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 22 C 0.10 2.20 4.85 -4.04 -0.02 2.18 16 23 C -0.16 -3.25 7.76 37.16 0.29 -2.96 16 24 C -0.08 -1.54 5.53 -39.20 -0.22 -1.76 16 25 C -0.18 -2.92 9.89 -39.50 -0.39 -3.31 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.65 5.40 -52.49 -0.28 1.37 16 35 H 0.13 2.42 7.82 -52.49 -0.41 2.01 16 36 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 37 H 0.03 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.13 3.13 5.53 -51.93 -0.29 2.84 16 39 H 0.06 1.28 5.13 -51.93 -0.27 1.02 16 40 H 0.04 0.74 6.62 -51.93 -0.34 0.39 16 41 H 0.07 1.51 7.14 -51.92 -0.37 1.14 16 42 H 0.19 3.38 1.86 -82.03 -0.15 3.23 16 43 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -30.00 333.98 -7.57 -37.57 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.02 Total: 6.74 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.64 Total: -10.36 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.17 Total: -33.40 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.09 Total: -21.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.00 -7.57 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267325543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.942 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds