Wall clock time and date at job start Tue Mar 31 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09001 * 109.47112 * 55.00582 * 3 2 1 5 5 C 1.53001 * 109.46984 * 175.00487 * 3 2 1 6 6 O 1.42902 * 109.47307 * 295.00147 * 3 2 1 7 7 C 1.35712 * 116.99933 * 155.14970 * 6 3 2 8 8 C 1.39006 * 119.90713 * 5.33049 * 7 6 3 9 9 C 1.37688 * 120.09788 * 179.97438 * 8 7 6 10 10 C 1.39796 * 119.90296 * 0.02562 * 9 8 7 11 11 C 1.47489 * 120.09667 * 179.97438 * 10 9 8 12 12 O 1.21623 * 120.00259 * 336.84162 * 11 10 9 13 13 N 1.34781 * 120.00263 * 156.83574 * 11 10 9 14 14 C 1.36903 * 119.99922 * 202.09543 * 13 11 10 15 15 H 1.07998 * 120.00261 * 327.29883 * 14 13 11 16 16 C 1.39025 * 119.99805 * 147.29948 * 14 13 11 17 17 N 1.31379 * 119.99961 * 10.96433 * 16 14 13 18 18 Si 1.86793 * 120.00096 * 190.95868 * 16 14 13 19 19 H 1.48504 * 109.47230 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46922 * 120.00120 * 18 16 14 21 21 H 1.48498 * 109.47488 * 239.99945 * 18 16 14 22 22 C 1.46499 * 119.99805 * 22.10118 * 13 11 10 23 23 C 1.53006 * 109.46838 * 290.73114 * 22 13 11 24 24 C 1.39806 * 119.81321 * 0.27515 * 10 9 8 25 25 C 1.37688 * 119.89935 * 359.44252 * 24 10 9 26 26 H 1.09000 * 109.46865 * 299.99525 * 1 2 3 27 27 H 1.08998 * 109.47592 * 59.99805 * 1 2 3 28 28 H 1.08999 * 109.47550 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46865 * 240.00475 * 2 1 3 30 30 H 1.08998 * 109.47592 * 120.00195 * 2 1 3 31 31 H 1.09002 * 109.47176 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47049 * 300.00210 * 5 3 2 33 33 H 1.09001 * 109.47119 * 60.00099 * 5 3 2 34 34 H 1.08002 * 119.95437 * 0.02562 * 8 7 6 35 35 H 1.07996 * 120.05112 * 179.97438 * 9 8 7 36 36 H 0.97004 * 120.00588 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.47590 * 50.73008 * 22 13 11 38 38 H 1.09004 * 109.47110 * 170.73454 * 22 13 11 39 39 H 1.08997 * 109.46988 * 22.70212 * 23 22 13 40 40 H 1.09000 * 109.47311 * 142.71096 * 23 22 13 41 41 H 1.09008 * 109.46790 * 262.70772 * 23 22 13 42 42 H 1.08003 * 120.04839 * 179.71064 * 24 10 9 43 43 H 1.08003 * 119.94959 * 180.28309 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1256 6 8 1.6619 2.0815 -1.2210 7 6 1.5552 3.4342 -1.2012 8 6 1.9168 4.1413 -0.0603 9 6 1.8107 5.5139 -0.0361 10 6 1.3380 6.1963 -1.1608 11 6 1.2220 7.6665 -1.1393 12 8 1.1212 8.2531 -0.0787 13 7 1.2280 8.3600 -2.2950 14 6 1.5725 9.6849 -2.2965 15 1 1.3349 10.3057 -1.4452 16 6 2.2282 10.2314 -3.3938 17 7 2.3269 9.5443 -4.5093 18 14 2.9689 11.9426 -3.2823 19 1 2.7238 12.5009 -1.9283 20 1 4.4314 11.8659 -3.5282 21 1 2.3411 12.8212 -4.3017 22 6 0.8656 7.6959 -3.5496 23 6 1.9559 6.6914 -3.9283 24 6 0.9695 5.4808 -2.3040 25 6 1.0843 4.1088 -2.3217 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9281 2.4720 0.1261 32 1 3.8532 0.9570 1.0569 33 1 3.9994 0.9053 -0.7163 34 1 2.2823 3.6134 0.8081 35 1 2.0914 6.0624 0.8509 36 1 2.7847 9.9254 -5.2749 37 1 -0.0822 7.1728 -3.4233 38 1 0.7673 8.4405 -4.3396 39 1 2.5130 6.4063 -3.0359 40 1 1.4972 5.8062 -4.3688 41 1 2.6342 7.1465 -4.6502 42 1 0.5994 6.0038 -3.1735 43 1 0.8042 3.5557 -3.2060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267325543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:09 Heat of formation + Delta-G solvation = -3.150495 kcal Electronic energy + Delta-G solvation = -23800.954165 eV Core-core repulsion = 20427.661588 eV Total energy + Delta-G solvation = -3373.292576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.82377 -40.64658 -38.27871 -37.33397 -35.16729 -34.28341 -32.60214 -31.43610 -30.68890 -30.28561 -27.09821 -25.05464 -24.41183 -23.88354 -23.48734 -21.62598 -21.06202 -19.35647 -19.00733 -18.11891 -16.96454 -16.89641 -16.30471 -16.17521 -15.85733 -15.59190 -15.32833 -15.10488 -14.74497 -14.61822 -14.34180 -14.17442 -13.76628 -13.66963 -13.39626 -13.13523 -12.95702 -12.85641 -12.73815 -12.58866 -12.45149 -12.17094 -12.08180 -11.97052 -11.79734 -11.59282 -11.36289 -11.28807 -10.86327 -10.52429 -9.76446 -9.51865 -9.06623 -8.25277 -6.00838 0.11573 0.44997 1.38634 1.42060 1.54497 2.03492 2.23981 2.28497 2.88994 2.96307 3.15429 3.72640 3.87051 3.89579 3.98587 4.03746 4.12589 4.29818 4.33540 4.40269 4.47587 4.58100 4.66806 4.67519 4.70132 4.80221 4.92226 4.98194 5.01037 5.07640 5.09838 5.18561 5.23944 5.30967 5.35313 5.39945 5.44169 5.53696 5.61295 5.72633 5.76286 6.21617 6.49577 6.59171 7.13871 7.43580 7.96950 8.67328 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032350 B = 0.003668 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.333810 B = 7630.822316 C = 7856.366364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.068 3.932 4 H 0.076 0.924 5 C -0.179 4.179 6 O -0.311 6.311 7 C 0.151 3.849 8 C -0.222 4.222 9 C -0.044 4.044 10 C -0.186 4.186 11 C 0.491 3.509 12 O -0.632 6.632 13 N -0.458 5.458 14 C -0.347 4.347 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.877 5.877 18 Si 0.986 3.014 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.265 1.265 22 C 0.099 3.901 23 C -0.148 4.148 24 C -0.078 4.078 25 C -0.177 4.177 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.152 0.848 35 H 0.116 0.884 36 H 0.274 0.726 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.192 0.808 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -19.466 2.144 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C 0.012 3.988 4 H 0.094 0.906 5 C -0.237 4.237 6 O -0.224 6.224 7 C 0.104 3.896 8 C -0.241 4.241 9 C -0.063 4.063 10 C -0.189 4.189 11 C 0.283 3.717 12 O -0.520 6.520 13 N -0.176 5.176 14 C -0.474 4.474 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.515 5.515 18 Si 0.810 3.190 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.190 1.190 22 C -0.023 4.023 23 C -0.205 4.205 24 C -0.095 4.095 25 C -0.195 4.195 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.208 0.792 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.070 -19.268 2.254 19.400 hybrid contribution 0.500 1.380 0.424 1.527 sum 0.570 -17.888 2.678 18.097 Atomic orbital electron populations 1.21776 0.95465 1.02416 1.01657 1.21655 0.96504 0.92586 1.04272 1.22839 0.95860 0.94793 0.85265 0.90618 1.22384 0.94400 1.02771 1.04105 1.86062 1.83327 1.15877 1.37172 1.19269 0.93285 0.82931 0.94076 1.21214 1.09562 0.93558 0.99739 1.20967 0.94885 0.94082 0.96382 1.20016 1.09163 0.92478 0.97287 1.18787 0.81082 0.87931 0.83886 1.90520 1.56374 1.72762 1.32393 1.43601 1.58736 1.09147 1.06132 1.19541 1.37035 0.86285 1.04581 0.91735 1.26046 0.95570 1.03381 0.94406 1.69799 1.40530 1.39045 1.02137 0.85000 0.78286 0.77620 0.78125 1.20533 1.19818 1.19026 1.22118 0.94904 0.97069 0.88182 1.22559 0.99245 0.97872 1.00840 1.23394 0.93848 0.94176 0.98079 1.20561 1.06898 0.93036 0.99004 0.92865 0.93588 0.91106 0.90695 0.87799 0.93046 0.88763 0.91398 0.83031 0.86620 0.91487 0.92435 0.86903 0.93658 0.89533 0.92803 0.79197 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.81 71.98 0.71 -1.57 16 2 C -0.11 -1.51 5.64 30.59 0.17 -1.33 16 3 C 0.07 1.22 2.22 30.60 0.07 1.29 16 4 H 0.08 1.36 6.30 -2.39 -0.02 1.34 16 5 C -0.18 -2.87 9.16 71.98 0.66 -2.21 16 6 O -0.31 -7.61 9.32 -90.33 -0.84 -8.46 16 7 C 0.15 4.38 6.61 22.64 0.15 4.53 16 8 C -0.22 -6.74 8.21 22.32 0.18 -6.56 16 9 C -0.04 -1.69 9.58 22.52 0.22 -1.47 16 10 C -0.19 -8.07 4.92 -20.08 -0.10 -8.17 16 11 C 0.49 26.53 7.17 86.68 0.62 27.15 16 12 O -0.63 -38.70 16.46 -4.10 -0.07 -38.77 16 13 N -0.46 -24.67 2.70 -655.72 -1.77 -26.44 16 14 C -0.35 -20.13 9.21 84.09 0.77 -19.36 16 15 H 0.06 4.05 7.51 -2.91 -0.02 4.02 16 16 C 0.01 0.44 5.40 84.95 0.46 0.90 16 17 N -0.88 -44.26 9.03 21.68 0.20 -44.07 16 18 Si 0.99 42.67 29.57 68.60 2.03 44.70 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 C 0.10 4.42 4.85 86.38 0.42 4.84 16 23 C -0.15 -5.77 7.76 71.98 0.56 -5.21 16 24 C -0.08 -2.77 5.53 22.52 0.12 -2.65 16 25 C -0.18 -5.28 9.89 22.32 0.22 -5.06 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 27 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.99 6.90 -2.39 -0.02 0.98 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.15 3.67 5.40 -2.91 -0.02 3.65 16 35 H 0.12 4.63 7.82 -2.91 -0.02 4.61 16 36 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 37 H 0.06 2.26 6.36 -2.39 -0.02 2.24 16 38 H 0.11 5.45 5.53 -2.38 -0.01 5.44 16 39 H 0.04 1.92 5.13 -2.39 -0.01 1.91 16 40 H 0.09 2.61 6.62 -2.39 -0.02 2.59 16 41 H 0.05 2.26 7.14 -2.38 -0.02 2.24 16 42 H 0.19 6.56 1.86 -30.66 -0.06 6.50 16 43 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.65 333.98 5.75 -62.90 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.97 Total: 25.00 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.23 Total: -14.86 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.57 Total: -70.50 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.91 Total: -47.23 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -68.65 5.75 -62.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267325543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds