Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47139 * 2 1 4 4 H 1.08997 * 109.46922 * 304.99973 * 3 2 1 5 5 C 1.52999 * 109.46863 * 185.00022 * 3 2 1 6 6 O 1.42896 * 109.46826 * 64.99942 * 3 2 1 7 7 C 1.35713 * 116.99764 * 210.13119 * 6 3 2 8 8 C 1.39018 * 119.90558 * 353.76122 * 7 6 3 9 9 C 1.37685 * 120.09249 * 180.02562 * 8 7 6 10 10 C 1.39799 * 119.90654 * 0.27349 * 9 8 7 11 11 C 1.47492 * 120.09452 * 179.72122 * 10 9 8 12 12 O 1.21623 * 120.00024 * 320.78955 * 11 10 9 13 13 N 1.34780 * 120.00231 * 140.78696 * 11 10 9 14 14 C 1.36899 * 120.00388 * 186.12660 * 13 11 10 15 15 H 1.08009 * 119.99767 * 1.61002 * 14 13 11 16 16 C 1.39020 * 120.00243 * 181.61043 * 14 13 11 17 17 N 1.31375 * 119.99922 * 6.71075 * 16 14 13 18 18 Si 1.86805 * 119.99976 * 186.71674 * 16 14 13 19 19 H 1.48497 * 109.47099 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47211 * 119.99978 * 18 16 14 21 21 H 1.48507 * 109.46718 * 239.99735 * 18 16 14 22 22 C 1.46500 * 119.99538 * 6.13273 * 13 11 10 23 23 C 1.52997 * 109.47422 * 98.13368 * 22 13 11 24 24 C 1.39800 * 119.81008 * 359.45143 * 10 9 8 25 25 C 1.37682 * 119.90522 * 0.52784 * 24 10 9 26 26 H 1.09002 * 109.47023 * 59.99786 * 1 2 3 27 27 H 1.09004 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47277 * 300.00058 * 1 2 3 29 29 H 1.09004 * 109.47277 * 239.99942 * 2 1 3 30 30 H 1.09007 * 109.47319 * 119.99881 * 2 1 3 31 31 H 1.08999 * 109.47288 * 60.00379 * 5 3 2 32 32 H 1.09004 * 109.46940 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47312 * 299.99713 * 5 3 2 34 34 H 1.07989 * 119.94962 * 359.97438 * 8 7 6 35 35 H 1.07997 * 120.04585 * 180.02562 * 9 8 7 36 36 H 0.96998 * 120.00368 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46676 * 218.13550 * 22 13 11 38 38 H 1.09002 * 109.47343 * 338.12907 * 22 13 11 39 39 H 1.09003 * 109.47045 * 188.59411 * 23 22 13 40 40 H 1.08993 * 109.47059 * 308.59925 * 23 22 13 41 41 H 1.09007 * 109.47155 * 68.59523 * 23 22 13 42 42 H 1.08001 * 120.04266 * 180.24993 * 24 10 9 43 43 H 1.08000 * 119.94929 * 179.74535 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4478 3.4207 1.1750 8 6 1.7241 4.1272 0.0100 9 6 1.5088 5.4861 -0.0408 10 6 1.0171 6.1564 1.0832 11 6 0.7908 7.6131 1.0354 12 8 1.5797 8.3323 0.4526 13 7 -0.2903 8.1473 1.6374 14 6 -0.5687 9.4793 1.4881 15 1 0.0633 10.0968 0.8669 16 6 -1.6648 10.0373 2.1361 17 7 -2.3554 9.3210 2.9940 18 14 -2.1557 11.8056 1.7870 19 1 -1.2232 12.3906 0.7904 20 1 -3.5396 11.8382 1.2496 21 1 -2.0941 12.5937 3.0442 22 6 -1.1675 7.3024 2.4516 23 6 -0.8035 7.4636 3.9288 24 6 0.7352 5.4412 2.2508 25 6 0.9529 4.0823 2.2929 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9571 -1.0571 32 1 3.9281 2.4720 -0.1262 33 1 3.9994 0.9053 0.7161 34 1 2.1088 3.6094 -0.8560 35 1 1.7233 6.0341 -0.9463 36 1 -3.1204 9.7101 3.4459 37 1 -2.2045 7.6012 2.2981 38 1 -1.0426 6.2600 2.1582 39 1 -1.3476 6.7267 4.5196 40 1 0.2683 7.3129 4.0575 41 1 -1.0719 8.4663 4.2619 42 1 0.3514 5.9546 3.1200 43 1 0.7393 3.5298 3.1959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267325547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -22.349462 kcal Electronic energy + Delta-G solvation = -23599.804914 eV Core-core repulsion = 20225.679808 eV Total energy + Delta-G solvation = -3374.125106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24450 -38.95417 -36.85208 -35.21689 -34.20150 -31.97556 -30.82999 -30.13409 -29.57521 -29.16799 -25.23977 -24.16162 -22.94012 -22.57862 -21.93539 -20.61890 -19.37319 -18.20063 -16.96381 -16.45629 -15.69347 -15.24443 -15.05523 -14.77811 -14.29592 -14.06807 -13.93784 -13.48785 -13.48296 -13.40342 -13.21250 -12.74118 -12.57374 -12.20082 -11.95184 -11.90853 -11.72447 -11.41397 -11.26024 -11.24806 -11.09386 -10.83660 -10.73641 -10.63419 -10.31898 -10.25729 -10.13399 -9.91503 -8.91802 -8.57512 -8.46265 -7.78074 -7.74022 -6.22535 -3.82389 1.57315 1.73378 3.12660 3.23082 3.25403 3.30477 3.75426 4.07489 4.38458 4.48309 4.70931 4.82052 4.89475 5.03827 5.12211 5.17565 5.22612 5.30689 5.36788 5.43758 5.61355 5.67266 5.71842 5.74023 5.79423 5.90186 5.97788 6.02523 6.11136 6.28751 6.38333 6.53094 6.62646 6.66952 6.73120 6.82570 6.98880 7.06787 7.36989 7.60655 7.64092 7.79832 8.06542 8.51795 9.15432 9.41726 9.97957 10.61517 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.003598 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.223069 B = 7781.199386 C = 8166.725246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.077 3.923 4 H 0.076 0.924 5 C -0.178 4.178 6 O -0.309 6.309 7 C 0.128 3.872 8 C -0.220 4.220 9 C -0.041 4.041 10 C -0.129 4.129 11 C 0.473 3.527 12 O -0.597 6.597 13 N -0.431 5.431 14 C -0.287 4.287 15 H 0.106 0.894 16 C 0.020 3.980 17 N -0.875 5.875 18 Si 0.933 3.067 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.099 3.901 23 C -0.152 4.152 24 C -0.074 4.074 25 C -0.163 4.163 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.265 0.735 37 H 0.121 0.879 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.099 0.901 42 H 0.155 0.845 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -16.491 -2.511 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.021 3.979 4 H 0.094 0.906 5 C -0.235 4.235 6 O -0.223 6.223 7 C 0.083 3.917 8 C -0.239 4.239 9 C -0.061 4.061 10 C -0.132 4.132 11 C 0.263 3.737 12 O -0.484 6.484 13 N -0.147 5.147 14 C -0.415 4.415 15 H 0.124 0.876 16 C -0.180 4.180 17 N -0.517 5.517 18 Si 0.760 3.240 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.024 4.024 23 C -0.209 4.209 24 C -0.092 4.092 25 C -0.181 4.181 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.117 0.883 42 H 0.172 0.828 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.424 -16.190 -2.505 16.737 hybrid contribution -0.235 0.743 -0.221 0.809 sum 3.189 -15.448 -2.725 16.007 Atomic orbital electron populations 1.21766 0.95115 1.01696 1.02627 1.21646 0.96876 0.94215 1.02900 1.22499 0.94987 0.93768 0.86641 0.90625 1.22332 0.95319 1.03276 1.02597 1.86035 1.83413 1.18509 1.34388 1.19113 0.95742 0.82304 0.94531 1.21072 1.09530 0.95249 0.98026 1.20938 0.94490 0.92791 0.97857 1.20164 1.03198 0.95174 0.94691 1.17774 0.83689 0.86504 0.85741 1.90600 1.46310 1.61665 1.49807 1.43786 1.21080 1.08769 1.41079 1.19945 1.10212 0.84366 1.26955 0.87609 1.25314 0.96578 1.00488 0.95651 1.70076 1.19664 1.35781 1.26180 0.85733 0.78450 0.81442 0.78381 1.19286 1.20644 1.20715 1.22231 0.98987 0.91062 0.90105 1.22350 0.97210 1.04632 0.96746 1.22070 0.95050 0.93084 0.99020 1.20319 1.05869 0.94320 0.97612 0.92772 0.92598 0.91802 0.90346 0.90922 0.91248 0.91642 0.91562 0.85637 0.85492 0.92381 0.86146 0.93832 0.94421 0.95626 0.88288 0.82779 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.16 0.36 -1.00 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.80 2.20 -26.73 -0.06 0.74 16 4 H 0.08 0.78 6.00 -51.93 -0.31 0.47 16 5 C -0.18 -1.63 9.31 37.16 0.35 -1.28 16 6 O -0.31 -4.20 9.31 -18.84 -0.18 -4.38 16 7 C 0.13 1.99 6.66 -39.01 -0.26 1.74 16 8 C -0.22 -3.43 8.48 -39.49 -0.33 -3.76 16 9 C -0.04 -0.77 9.62 -39.20 -0.38 -1.15 16 10 C -0.13 -2.74 5.32 -104.96 -0.56 -3.30 16 11 C 0.47 12.22 7.29 -12.49 -0.09 12.13 16 12 O -0.60 -17.33 16.50 5.26 0.09 -17.25 16 13 N -0.43 -11.19 2.64 -116.01 -0.31 -11.50 16 14 C -0.29 -7.91 9.51 -15.00 -0.14 -8.05 16 15 H 0.11 3.08 7.18 -52.48 -0.38 2.70 16 16 C 0.02 0.51 5.36 -17.46 -0.09 0.42 16 17 N -0.87 -21.66 7.18 55.50 0.40 -21.26 16 18 Si 0.93 20.31 29.56 -169.99 -5.02 15.28 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 C 0.10 2.25 4.87 -4.04 -0.02 2.23 16 23 C -0.15 -3.20 8.41 37.16 0.31 -2.89 16 24 C -0.07 -1.38 7.35 -39.20 -0.29 -1.67 16 25 C -0.16 -2.65 9.97 -39.50 -0.39 -3.04 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.68 7.44 -51.93 -0.39 0.29 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.13 1.60 5.59 -52.49 -0.29 1.31 16 35 H 0.13 2.34 8.05 -52.49 -0.42 1.92 16 36 H 0.26 6.21 8.31 -40.82 -0.34 5.88 16 37 H 0.12 2.95 5.71 -51.93 -0.30 2.65 16 38 H 0.04 0.91 4.65 -51.93 -0.24 0.67 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.52 6.77 -51.93 -0.35 0.17 16 41 H 0.10 2.34 5.90 -51.93 -0.31 2.04 16 42 H 0.16 2.89 3.20 -52.49 -0.17 2.72 16 43 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -29.83 337.99 -7.75 -37.59 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.08 Total: 6.44 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.75 Total: -10.02 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.09 Total: -32.76 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.09 Total: -21.62 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.83 -7.75 -37.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267325547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.236 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds