Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47139 * 2 1 4 4 H 1.08997 * 109.46922 * 304.99973 * 3 2 1 5 5 C 1.52999 * 109.46863 * 185.00022 * 3 2 1 6 6 O 1.42896 * 109.46826 * 64.99942 * 3 2 1 7 7 C 1.35713 * 116.99764 * 210.13119 * 6 3 2 8 8 C 1.39018 * 119.90558 * 353.76122 * 7 6 3 9 9 C 1.37685 * 120.09249 * 180.02562 * 8 7 6 10 10 C 1.39799 * 119.90654 * 0.27349 * 9 8 7 11 11 C 1.47492 * 120.09452 * 179.72122 * 10 9 8 12 12 O 1.21623 * 120.00024 * 320.78955 * 11 10 9 13 13 N 1.34780 * 120.00231 * 140.78696 * 11 10 9 14 14 C 1.36899 * 120.00388 * 186.12660 * 13 11 10 15 15 H 1.08009 * 119.99767 * 1.61002 * 14 13 11 16 16 C 1.39020 * 120.00243 * 181.61043 * 14 13 11 17 17 N 1.31375 * 119.99922 * 6.71075 * 16 14 13 18 18 Si 1.86805 * 119.99976 * 186.71674 * 16 14 13 19 19 H 1.48497 * 109.47099 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47211 * 119.99978 * 18 16 14 21 21 H 1.48507 * 109.46718 * 239.99735 * 18 16 14 22 22 C 1.46500 * 119.99538 * 6.13273 * 13 11 10 23 23 C 1.52997 * 109.47422 * 98.13368 * 22 13 11 24 24 C 1.39800 * 119.81008 * 359.45143 * 10 9 8 25 25 C 1.37682 * 119.90522 * 0.52784 * 24 10 9 26 26 H 1.09002 * 109.47023 * 59.99786 * 1 2 3 27 27 H 1.09004 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47277 * 300.00058 * 1 2 3 29 29 H 1.09004 * 109.47277 * 239.99942 * 2 1 3 30 30 H 1.09007 * 109.47319 * 119.99881 * 2 1 3 31 31 H 1.08999 * 109.47288 * 60.00379 * 5 3 2 32 32 H 1.09004 * 109.46940 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47312 * 299.99713 * 5 3 2 34 34 H 1.07989 * 119.94962 * 359.97438 * 8 7 6 35 35 H 1.07997 * 120.04585 * 180.02562 * 9 8 7 36 36 H 0.96998 * 120.00368 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46676 * 218.13550 * 22 13 11 38 38 H 1.09002 * 109.47343 * 338.12907 * 22 13 11 39 39 H 1.09003 * 109.47045 * 188.59411 * 23 22 13 40 40 H 1.08993 * 109.47059 * 308.59925 * 23 22 13 41 41 H 1.09007 * 109.47155 * 68.59523 * 23 22 13 42 42 H 1.08001 * 120.04266 * 180.24993 * 24 10 9 43 43 H 1.08000 * 119.94929 * 179.74535 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4478 3.4207 1.1750 8 6 1.7241 4.1272 0.0100 9 6 1.5088 5.4861 -0.0408 10 6 1.0171 6.1564 1.0832 11 6 0.7908 7.6131 1.0354 12 8 1.5797 8.3323 0.4526 13 7 -0.2903 8.1473 1.6374 14 6 -0.5687 9.4793 1.4881 15 1 0.0633 10.0968 0.8669 16 6 -1.6648 10.0373 2.1361 17 7 -2.3554 9.3210 2.9940 18 14 -2.1557 11.8056 1.7870 19 1 -1.2232 12.3906 0.7904 20 1 -3.5396 11.8382 1.2496 21 1 -2.0941 12.5937 3.0442 22 6 -1.1675 7.3024 2.4516 23 6 -0.8035 7.4636 3.9288 24 6 0.7352 5.4412 2.2508 25 6 0.9529 4.0823 2.2929 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8532 0.9571 -1.0571 32 1 3.9281 2.4720 -0.1262 33 1 3.9994 0.9053 0.7161 34 1 2.1088 3.6094 -0.8560 35 1 1.7233 6.0341 -0.9463 36 1 -3.1204 9.7101 3.4459 37 1 -2.2045 7.6012 2.2981 38 1 -1.0426 6.2600 2.1582 39 1 -1.3476 6.7267 4.5196 40 1 0.2683 7.3129 4.0575 41 1 -1.0719 8.4663 4.2619 42 1 0.3514 5.9546 3.1200 43 1 0.7393 3.5298 3.1959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267325547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = -38.334386 kcal Electronic energy + Delta-G solvation = -23600.498072 eV Core-core repulsion = 20225.679808 eV Total energy + Delta-G solvation = -3374.818264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56488 -40.54209 -38.26175 -37.20108 -35.09590 -33.85952 -32.25075 -31.45741 -30.77654 -30.67337 -27.11498 -25.09364 -24.17494 -24.04514 -23.59983 -21.63466 -21.06383 -19.34365 -18.88531 -18.19454 -16.91434 -16.86388 -16.29246 -16.10084 -15.98568 -15.52924 -15.32818 -14.94681 -14.76313 -14.54520 -14.27340 -14.15191 -13.85890 -13.75777 -13.24352 -13.12042 -12.95256 -12.82326 -12.76753 -12.62955 -12.55545 -12.16316 -12.03715 -11.97246 -11.86258 -11.79239 -11.48841 -11.36471 -10.82713 -10.46000 -10.00896 -9.70811 -9.12483 -8.18064 -5.88342 0.12941 0.36512 1.37583 1.42479 1.55607 2.03006 2.21503 2.26799 2.78706 3.06425 3.16796 3.72057 3.85229 3.86780 3.95747 4.02467 4.12977 4.28900 4.35617 4.46950 4.52673 4.59455 4.69940 4.71334 4.81655 4.87134 4.93009 4.99830 5.05084 5.07937 5.10465 5.18137 5.24039 5.28287 5.30516 5.39258 5.44155 5.53270 5.64819 5.71638 5.97836 6.07667 6.47817 6.54551 7.14895 7.45619 8.01373 8.63200 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030653 B = 0.003598 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.223069 B = 7781.199386 C = 8166.725246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C 0.066 3.934 4 H 0.079 0.921 5 C -0.176 4.176 6 O -0.310 6.310 7 C 0.145 3.855 8 C -0.208 4.208 9 C -0.049 4.049 10 C -0.162 4.162 11 C 0.458 3.542 12 O -0.648 6.648 13 N -0.439 5.439 14 C -0.338 4.338 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.871 5.871 18 Si 0.995 3.005 19 H -0.281 1.281 20 H -0.266 1.266 21 H -0.270 1.270 22 C 0.102 3.898 23 C -0.141 4.141 24 C -0.075 4.075 25 C -0.160 4.160 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.119 0.881 36 H 0.274 0.726 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.152 0.848 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -19.266 -2.183 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.010 3.990 4 H 0.097 0.903 5 C -0.233 4.233 6 O -0.224 6.224 7 C 0.098 3.902 8 C -0.226 4.226 9 C -0.068 4.068 10 C -0.166 4.166 11 C 0.250 3.750 12 O -0.539 6.539 13 N -0.155 5.155 14 C -0.466 4.466 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.511 5.511 18 Si 0.818 3.182 19 H -0.206 1.206 20 H -0.191 1.191 21 H -0.195 1.195 22 C -0.019 4.019 23 C -0.198 4.198 24 C -0.093 4.093 25 C -0.178 4.178 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.174 0.826 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.169 0.831 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.932 -19.015 -2.142 19.358 hybrid contribution -0.083 1.418 -0.326 1.457 sum 2.850 -17.597 -2.469 17.996 Atomic orbital electron populations 1.21784 0.95599 1.02394 1.01629 1.21681 0.96381 0.92828 1.04273 1.22890 0.96047 0.94710 0.85333 0.90301 1.22335 0.94112 1.02783 1.04093 1.86066 1.82854 1.17059 1.36445 1.19188 0.93712 0.83349 0.93921 1.21275 1.08298 0.93785 0.99283 1.20969 0.94713 0.94154 0.97001 1.19912 1.06915 0.92699 0.97046 1.18556 0.83072 0.88473 0.84926 1.90529 1.47978 1.63491 1.51874 1.43999 1.21446 1.08662 1.41368 1.19808 1.11898 0.85558 1.29312 0.90839 1.25985 0.95583 1.03966 0.94750 1.70173 1.19150 1.36793 1.24989 0.84855 0.78137 0.76950 0.78225 1.20604 1.19139 1.19481 1.22263 0.97320 0.91635 0.90728 1.22179 0.97665 1.04037 0.95921 1.21961 0.95418 0.94058 0.97875 1.20530 1.05013 0.93308 0.98948 0.92847 0.91162 0.93690 0.87779 0.90714 0.88723 0.93000 0.91390 0.82560 0.86267 0.91541 0.87908 0.91740 0.91065 0.95617 0.90874 0.83075 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.81 71.98 0.71 -1.61 16 2 C -0.11 -1.49 5.64 30.60 0.17 -1.32 16 3 C 0.07 1.14 2.20 30.60 0.07 1.20 16 4 H 0.08 1.34 6.00 -2.39 -0.01 1.33 16 5 C -0.18 -2.62 9.31 71.98 0.67 -1.95 16 6 O -0.31 -7.45 9.31 -90.34 -0.84 -8.29 16 7 C 0.14 4.13 6.66 22.64 0.15 4.28 16 8 C -0.21 -6.10 8.48 22.33 0.19 -5.91 16 9 C -0.05 -1.85 9.62 22.52 0.22 -1.63 16 10 C -0.16 -7.08 5.32 -20.08 -0.11 -7.19 16 11 C 0.46 25.03 7.29 86.68 0.63 25.66 16 12 O -0.65 -40.34 16.50 -4.10 -0.07 -40.41 16 13 N -0.44 -23.92 2.64 -639.18 -1.69 -25.60 16 14 C -0.34 -19.64 9.51 84.09 0.80 -18.84 16 15 H 0.07 4.63 7.18 -2.91 -0.02 4.61 16 16 C 0.00 -0.09 5.36 84.95 0.46 0.37 16 17 N -0.87 -43.17 7.18 21.68 0.16 -43.01 16 18 Si 0.99 42.16 29.56 68.60 2.03 44.19 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 C 0.10 4.73 4.87 86.38 0.42 5.15 16 23 C -0.14 -5.89 8.41 71.98 0.61 -5.28 16 24 C -0.07 -2.76 7.35 22.52 0.17 -2.59 16 25 C -0.16 -4.84 9.97 22.32 0.22 -4.62 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.93 7.44 -2.38 -0.02 0.91 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.16 3.55 5.59 -2.92 -0.02 3.53 16 35 H 0.12 4.58 8.05 -2.91 -0.02 4.56 16 36 H 0.27 12.57 8.31 -92.71 -0.77 11.80 16 37 H 0.10 5.10 5.71 -2.39 -0.01 5.08 16 38 H 0.06 2.69 4.65 -2.39 -0.01 2.68 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.03 1.05 6.77 -2.39 -0.02 1.04 16 41 H 0.07 3.47 5.90 -2.38 -0.01 3.45 16 42 H 0.15 5.59 3.20 -2.91 -0.01 5.58 16 43 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -68.37 337.99 5.97 -62.40 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.02 Total: 25.01 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.37 Total: -14.28 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.53 Total: -68.62 kcal Atomic # 8 Polarization: -47.79 SS G_CDS: -0.91 Total: -48.70 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.37 5.97 -62.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267325547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.066 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds