Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09007 * 109.46914 * 55.00190 * 3 2 1 5 5 C 1.53002 * 109.47315 * 174.99986 * 3 2 1 6 6 O 1.42898 * 109.47289 * 295.00509 * 3 2 1 7 7 C 1.35714 * 117.00024 * 156.10776 * 6 3 2 8 8 C 1.38994 * 119.91193 * 357.81937 * 7 6 3 9 9 C 1.37697 * 120.08745 * 179.97438 * 8 7 6 10 10 C 1.39737 * 119.91369 * 0.02562 * 9 8 7 11 11 C 1.47593 * 120.09038 * 180.02562 * 10 9 8 12 12 O 1.21592 * 120.00138 * 329.08474 * 11 10 9 13 13 N 1.34781 * 119.99947 * 149.08195 * 11 10 9 14 14 C 1.46497 * 120.00044 * 3.61977 * 13 11 10 15 15 C 1.46509 * 119.99684 * 183.61679 * 13 11 10 16 16 C 1.50702 * 109.46792 * 90.00289 * 15 13 11 17 17 H 1.08003 * 120.00329 * 359.97438 * 16 15 13 18 18 C 1.37881 * 119.99653 * 179.97438 * 16 15 13 19 19 N 1.31505 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47106 * 89.99800 * 20 18 16 22 22 H 1.48496 * 109.47437 * 209.99575 * 20 18 16 23 23 H 1.48500 * 109.47148 * 330.00002 * 20 18 16 24 24 C 1.39737 * 119.82031 * 0.27494 * 10 9 8 25 25 C 1.37702 * 119.90985 * 359.44520 * 24 10 9 26 26 H 1.09000 * 109.47141 * 59.99399 * 1 2 3 27 27 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47309 * 299.99854 * 1 2 3 29 29 H 1.09007 * 109.47312 * 240.00422 * 2 1 3 30 30 H 1.08995 * 109.47159 * 120.00129 * 2 1 3 31 31 H 1.08992 * 109.47513 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.47008 * 300.00679 * 5 3 2 33 33 H 1.08999 * 109.47001 * 59.99938 * 5 3 2 34 34 H 1.08000 * 119.95304 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.04434 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.47073 * 94.36931 * 14 13 11 37 37 H 1.09001 * 109.46728 * 214.36683 * 14 13 11 38 38 H 1.08994 * 109.46750 * 334.36207 * 14 13 11 39 39 H 1.09001 * 109.46954 * 209.99717 * 15 13 11 40 40 H 1.09001 * 109.47369 * 330.00356 * 15 13 11 41 41 H 0.97005 * 120.00195 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.04158 * 179.70636 * 24 10 9 43 43 H 1.08004 * 119.95537 * 180.25361 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0815 -1.2210 7 6 1.5747 3.4357 -1.2064 8 6 1.8042 4.1324 -0.0257 9 6 1.7173 5.5065 -0.0069 10 6 1.3973 6.2005 -1.1768 11 6 1.3036 7.6734 -1.1612 12 8 0.9453 8.2492 -0.1520 13 7 1.6154 8.3802 -2.2656 14 6 1.9706 7.6841 -3.5048 15 6 1.5990 9.8447 -2.2269 16 6 2.9600 10.3518 -1.8248 17 1 3.7573 9.6531 -1.6182 18 6 3.1873 11.7077 -1.7205 19 7 2.2166 12.5584 -1.9725 20 14 4.8740 12.3363 -1.2213 21 1 5.7048 12.5420 -2.4350 22 1 4.7280 13.6246 -0.4974 23 1 5.5304 11.3420 -0.3349 24 6 1.1611 5.4960 -2.3602 25 6 1.2557 4.1223 -2.3720 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.9281 2.4720 0.1262 32 1 3.8532 0.9569 1.0571 33 1 3.9994 0.9053 -0.7161 34 1 2.0511 3.5952 0.8781 35 1 1.8954 6.0470 0.9110 36 1 1.0831 7.5768 -4.1284 37 1 2.7244 8.2599 -4.0416 38 1 2.3685 6.6979 -3.2661 39 1 1.3442 10.2314 -3.2137 40 1 0.8573 10.1808 -1.5023 41 1 2.3764 13.5124 -1.8988 42 1 0.9089 6.0285 -3.2653 43 1 1.0773 3.5773 -3.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267368326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = -39.581761 kcal Electronic energy + Delta-G solvation = -22967.596288 eV Core-core repulsion = 19592.723934 eV Total energy + Delta-G solvation = -3374.872355 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56236 -39.24728 -37.15479 -34.93590 -34.42278 -32.67864 -31.18026 -30.35075 -29.93399 -27.59772 -26.09478 -24.45119 -23.57256 -23.14764 -21.94427 -20.82063 -19.15064 -18.34159 -16.70518 -16.50706 -16.09934 -15.70135 -15.21539 -14.91062 -14.58136 -14.42262 -14.27089 -13.89273 -13.66008 -13.42778 -13.29731 -13.16975 -12.53794 -12.46264 -12.21618 -12.18822 -12.09538 -11.81243 -11.52982 -11.42170 -11.21478 -11.03659 -10.91967 -10.78920 -10.58419 -10.46150 -10.15083 -9.62622 -9.01239 -8.92173 -8.42932 -8.13402 -7.62634 -6.03480 -4.08318 1.17826 1.38813 2.99162 3.30787 3.34855 3.37723 3.42721 3.88338 4.18006 4.31146 4.45628 4.53663 4.63638 4.80025 4.86695 4.96109 5.09674 5.12190 5.22475 5.25674 5.30962 5.32654 5.46624 5.50523 5.58509 5.61377 5.71274 5.77994 5.82351 5.86851 5.94964 6.04381 6.21332 6.24198 6.33183 6.53322 6.68819 7.08808 7.33112 7.45939 7.54369 7.93101 8.24018 8.41167 8.90504 9.09217 9.56687 11.04611 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.003118 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.203291 B = 8978.625003 C = 9299.953612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.076 0.924 5 C -0.181 4.181 6 O -0.307 6.307 7 C 0.144 3.856 8 C -0.222 4.222 9 C -0.025 4.025 10 C -0.157 4.157 11 C 0.548 3.452 12 O -0.541 6.541 13 N -0.594 5.594 14 C 0.066 3.934 15 C 0.244 3.756 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.064 4.064 25 C -0.165 4.165 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.263 0.737 42 H 0.151 0.849 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -24.906 0.274 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.021 3.979 4 H 0.094 0.906 5 C -0.238 4.238 6 O -0.221 6.221 7 C 0.099 3.901 8 C -0.240 4.240 9 C -0.044 4.044 10 C -0.160 4.160 11 C 0.336 3.664 12 O -0.420 6.420 13 N -0.325 5.325 14 C -0.078 4.078 15 C 0.125 3.875 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.082 4.082 25 C -0.184 4.184 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.050 -24.502 0.625 24.532 hybrid contribution 1.106 0.513 0.411 1.287 sum 0.056 -23.988 1.037 24.011 Atomic orbital electron populations 1.21769 0.95069 1.01834 1.02554 1.21622 0.96891 0.93859 1.03136 1.22546 0.95123 0.93899 0.86332 0.90601 1.22368 0.95129 1.03431 1.02899 1.86061 1.83325 1.16739 1.35960 1.19180 0.94544 0.82266 0.94136 1.21165 1.10178 0.95003 0.97667 1.21025 0.92908 0.92843 0.97633 1.20144 1.06816 0.94495 0.94557 1.18091 0.78595 0.85936 0.83813 1.90746 1.47747 1.71420 1.32075 1.48048 1.65595 1.09472 1.09430 1.22263 0.99932 0.98142 0.87415 1.19332 0.98097 0.71885 0.98174 1.21441 0.96589 0.91778 1.46782 0.92426 1.24938 0.97274 0.96667 0.95240 1.69931 1.31863 1.02417 1.49148 0.86488 0.83967 0.78304 0.78616 1.20625 1.21063 1.19885 1.21820 0.95177 0.93121 0.98073 1.20334 1.07603 0.93547 0.96877 0.91866 0.92482 0.92737 0.90797 0.90110 0.91559 0.91029 0.91429 0.85121 0.84828 0.93230 0.90966 0.90646 0.94829 0.93577 0.92696 0.83210 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.15 0.36 -0.72 16 2 C -0.12 -0.78 5.64 -26.73 -0.15 -0.94 16 3 C 0.08 0.65 2.24 -26.73 -0.06 0.59 16 4 H 0.08 0.62 5.98 -51.92 -0.31 0.31 16 5 C -0.18 -1.37 9.25 37.16 0.34 -1.03 16 6 O -0.31 -3.41 9.33 -18.85 -0.18 -3.58 16 7 C 0.14 1.81 6.57 -39.02 -0.26 1.55 16 8 C -0.22 -2.84 8.32 -39.50 -0.33 -3.17 16 9 C -0.03 -0.39 9.59 -39.22 -0.38 -0.77 16 10 C -0.16 -2.72 5.48 -104.96 -0.58 -3.30 16 11 C 0.55 12.20 7.44 -12.44 -0.09 12.11 16 12 O -0.54 -14.30 16.28 5.29 0.09 -14.21 16 13 N -0.59 -13.12 2.86 -184.17 -0.53 -13.64 16 14 C 0.07 1.08 8.79 59.85 0.53 1.60 16 15 C 0.24 6.53 5.21 -5.19 -0.03 6.50 16 16 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 17 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.84 13.28 55.43 0.74 -26.10 16 20 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.06 -0.89 7.43 -39.22 -0.29 -1.18 16 25 C -0.16 -2.05 9.97 -39.50 -0.39 -2.44 16 26 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.58 7.33 -51.93 -0.38 0.20 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.13 1.36 5.64 -52.49 -0.30 1.06 16 35 H 0.13 2.14 7.93 -52.49 -0.42 1.72 16 36 H 0.05 0.68 7.40 -51.93 -0.38 0.29 16 37 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.08 1.07 4.75 -51.93 -0.25 0.83 16 39 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.15 1.85 4.74 -52.49 -0.25 1.61 16 43 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -33.90 351.37 -7.76 -41.66 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.42 Total: -1.41 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.74 Total: -5.05 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.21 Total: -39.75 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.09 Total: -17.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.90 -7.76 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267368326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.081 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds