Wall clock time and date at job start Tue Mar 31 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09007 * 109.46914 * 55.00190 * 3 2 1 5 5 C 1.53002 * 109.47315 * 174.99986 * 3 2 1 6 6 O 1.42898 * 109.47289 * 295.00509 * 3 2 1 7 7 C 1.35714 * 117.00024 * 156.10776 * 6 3 2 8 8 C 1.38994 * 119.91193 * 357.81937 * 7 6 3 9 9 C 1.37697 * 120.08745 * 179.97438 * 8 7 6 10 10 C 1.39737 * 119.91369 * 0.02562 * 9 8 7 11 11 C 1.47593 * 120.09038 * 180.02562 * 10 9 8 12 12 O 1.21592 * 120.00138 * 329.08474 * 11 10 9 13 13 N 1.34781 * 119.99947 * 149.08195 * 11 10 9 14 14 C 1.46497 * 120.00044 * 3.61977 * 13 11 10 15 15 C 1.46509 * 119.99684 * 183.61679 * 13 11 10 16 16 C 1.50702 * 109.46792 * 90.00289 * 15 13 11 17 17 H 1.08003 * 120.00329 * 359.97438 * 16 15 13 18 18 C 1.37881 * 119.99653 * 179.97438 * 16 15 13 19 19 N 1.31505 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47106 * 89.99800 * 20 18 16 22 22 H 1.48496 * 109.47437 * 209.99575 * 20 18 16 23 23 H 1.48500 * 109.47148 * 330.00002 * 20 18 16 24 24 C 1.39737 * 119.82031 * 0.27494 * 10 9 8 25 25 C 1.37702 * 119.90985 * 359.44520 * 24 10 9 26 26 H 1.09000 * 109.47141 * 59.99399 * 1 2 3 27 27 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47309 * 299.99854 * 1 2 3 29 29 H 1.09007 * 109.47312 * 240.00422 * 2 1 3 30 30 H 1.08995 * 109.47159 * 120.00129 * 2 1 3 31 31 H 1.08992 * 109.47513 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.47008 * 300.00679 * 5 3 2 33 33 H 1.08999 * 109.47001 * 59.99938 * 5 3 2 34 34 H 1.08000 * 119.95304 * 359.97438 * 8 7 6 35 35 H 1.08002 * 120.04434 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.47073 * 94.36931 * 14 13 11 37 37 H 1.09001 * 109.46728 * 214.36683 * 14 13 11 38 38 H 1.08994 * 109.46750 * 334.36207 * 14 13 11 39 39 H 1.09001 * 109.46954 * 209.99717 * 15 13 11 40 40 H 1.09001 * 109.47369 * 330.00356 * 15 13 11 41 41 H 0.97005 * 120.00195 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.04158 * 179.70636 * 24 10 9 43 43 H 1.08004 * 119.95537 * 180.25361 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0815 -1.2210 7 6 1.5747 3.4357 -1.2064 8 6 1.8042 4.1324 -0.0257 9 6 1.7173 5.5065 -0.0069 10 6 1.3973 6.2005 -1.1768 11 6 1.3036 7.6734 -1.1612 12 8 0.9453 8.2492 -0.1520 13 7 1.6154 8.3802 -2.2656 14 6 1.9706 7.6841 -3.5048 15 6 1.5990 9.8447 -2.2269 16 6 2.9600 10.3518 -1.8248 17 1 3.7573 9.6531 -1.6182 18 6 3.1873 11.7077 -1.7205 19 7 2.2166 12.5584 -1.9725 20 14 4.8740 12.3363 -1.2213 21 1 5.7048 12.5420 -2.4350 22 1 4.7280 13.6246 -0.4974 23 1 5.5304 11.3420 -0.3349 24 6 1.1611 5.4960 -2.3602 25 6 1.2557 4.1223 -2.3720 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.9281 2.4720 0.1262 32 1 3.8532 0.9569 1.0571 33 1 3.9994 0.9053 -0.7161 34 1 2.0511 3.5952 0.8781 35 1 1.8954 6.0470 0.9110 36 1 1.0831 7.5768 -4.1284 37 1 2.7244 8.2599 -4.0416 38 1 2.3685 6.6979 -3.2661 39 1 1.3442 10.2314 -3.2137 40 1 0.8573 10.1808 -1.5023 41 1 2.3764 13.5124 -1.8988 42 1 0.9089 6.0285 -3.2653 43 1 1.0773 3.5773 -3.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267368326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:15 Heat of formation + Delta-G solvation = -60.286480 kcal Electronic energy + Delta-G solvation = -22968.494112 eV Core-core repulsion = 19592.723934 eV Total energy + Delta-G solvation = -3375.770179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65362 -40.62766 -38.35903 -36.74579 -35.17491 -34.74956 -32.29345 -31.48710 -30.75407 -29.41598 -27.66964 -25.65074 -24.89240 -24.03674 -23.39117 -21.62383 -20.65707 -19.28933 -18.71471 -18.13937 -17.41342 -16.90909 -16.48799 -16.17035 -16.14157 -15.75778 -15.29834 -14.90413 -14.74506 -14.45586 -14.38957 -14.21210 -14.08628 -13.81749 -13.56413 -13.35814 -13.23592 -12.99624 -12.89385 -12.64290 -12.63646 -12.39458 -12.24386 -11.97711 -11.91514 -11.74405 -11.55294 -11.39631 -10.73779 -10.65971 -10.03099 -9.52211 -9.18160 -8.24336 -6.39743 -0.01151 0.31063 1.35359 1.38610 1.49122 1.87904 2.16048 2.28752 2.42618 2.81001 3.04897 3.66654 3.68143 3.79293 3.82651 3.98427 4.08142 4.19172 4.29144 4.39851 4.44950 4.53237 4.61781 4.66258 4.69814 4.77459 4.90488 4.94483 4.96198 4.99782 5.09953 5.11856 5.18637 5.22941 5.25784 5.27393 5.41407 5.43121 5.52353 5.63666 5.80895 6.03189 6.40961 6.65923 6.71775 7.23867 7.40277 8.82920 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.003118 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.203291 B = 8978.625003 C = 9299.953612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C 0.067 3.933 4 H 0.079 0.921 5 C -0.179 4.179 6 O -0.308 6.308 7 C 0.155 3.845 8 C -0.214 4.214 9 C -0.038 4.038 10 C -0.185 4.185 11 C 0.540 3.460 12 O -0.601 6.601 13 N -0.601 5.601 14 C 0.061 3.939 15 C 0.258 3.742 16 C -0.546 4.546 17 H 0.051 0.949 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.274 1.274 24 C -0.055 4.055 25 C -0.159 4.159 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.029 0.971 40 H 0.000 1.000 41 H 0.268 0.732 42 H 0.168 0.832 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -27.898 -0.477 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.012 3.988 4 H 0.097 0.903 5 C -0.236 4.236 6 O -0.222 6.222 7 C 0.109 3.891 8 C -0.232 4.232 9 C -0.057 4.057 10 C -0.188 4.188 11 C 0.331 3.669 12 O -0.484 6.484 13 N -0.331 5.331 14 C -0.081 4.081 15 C 0.136 3.864 16 C -0.585 4.585 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.199 1.199 24 C -0.073 4.073 25 C -0.177 4.177 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.047 0.953 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.185 0.815 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.295 -27.542 -0.172 27.544 hybrid contribution 0.641 1.269 0.658 1.566 sum 0.936 -26.273 0.486 26.294 Atomic orbital electron populations 1.21782 0.95469 1.02413 1.01712 1.21655 0.96472 0.92666 1.04306 1.22866 0.95875 0.94745 0.85319 0.90318 1.22365 0.94278 1.02842 1.04133 1.86089 1.82851 1.15642 1.37573 1.19335 0.92786 0.83113 0.93916 1.21297 1.09289 0.93621 0.99035 1.20997 0.93854 0.94111 0.96707 1.19802 1.10870 0.91267 0.96874 1.18908 0.77153 0.88121 0.82752 1.90690 1.50451 1.73130 1.34177 1.48051 1.65550 1.07884 1.11635 1.22605 1.01515 0.98637 0.85313 1.18826 0.96104 0.75174 0.96252 1.21681 0.97133 0.92292 1.47356 0.93041 1.25879 1.01566 0.96794 0.94881 1.70048 1.34067 1.02885 1.49688 0.85381 0.78897 0.77520 0.78802 1.18606 1.20420 1.19879 1.21903 0.94349 0.93830 0.97213 1.20627 1.06219 0.92822 0.98036 0.93434 0.91282 0.92830 0.90617 0.87931 0.92925 0.88954 0.91295 0.82812 0.86397 0.89890 0.91406 0.87993 0.95257 0.98227 0.92273 0.81529 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.81 71.98 0.71 -1.10 16 2 C -0.11 -1.15 5.64 30.59 0.17 -0.98 16 3 C 0.07 0.93 2.24 30.60 0.07 1.00 16 4 H 0.08 1.06 5.98 -2.38 -0.01 1.05 16 5 C -0.18 -2.19 9.25 71.98 0.67 -1.52 16 6 O -0.31 -5.87 9.33 -90.35 -0.84 -6.72 16 7 C 0.16 3.46 6.57 22.63 0.15 3.61 16 8 C -0.21 -5.15 8.32 22.32 0.19 -4.96 16 9 C -0.04 -1.19 9.59 22.50 0.22 -0.98 16 10 C -0.18 -6.46 5.48 -20.08 -0.11 -6.57 16 11 C 0.54 25.17 7.44 86.71 0.65 25.81 16 12 O -0.60 -34.10 16.28 -4.00 -0.07 -34.16 16 13 N -0.60 -27.40 2.86 -854.84 -2.44 -29.84 16 14 C 0.06 1.92 8.79 127.77 1.12 3.04 16 15 C 0.26 14.50 5.21 85.63 0.45 14.94 16 16 C -0.55 -32.55 9.39 25.60 0.24 -32.31 16 17 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -57.06 13.28 21.45 0.28 -56.78 16 20 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 24 C -0.05 -1.43 7.43 22.51 0.17 -1.26 16 25 C -0.16 -3.43 9.97 22.32 0.22 -3.20 16 26 H 0.05 0.69 7.82 -2.39 -0.02 0.68 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.80 7.33 -2.39 -0.02 0.78 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.15 2.89 5.64 -2.91 -0.02 2.87 16 35 H 0.12 4.02 7.93 -2.91 -0.02 4.00 16 36 H 0.08 2.08 7.40 -2.39 -0.02 2.07 16 37 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 38 H 0.10 2.70 4.75 -2.39 -0.01 2.69 16 39 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 40 H 0.00 -0.03 7.37 -2.39 -0.02 -0.04 16 41 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 42 H 0.17 3.67 4.74 -2.91 -0.01 3.65 16 43 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.73 351.37 5.32 -72.41 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.00 Total: 10.89 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.36 Total: -3.55 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -2.16 Total: -86.62 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.91 Total: -40.88 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.73 5.32 -72.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267368326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.120 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds