Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46761 * 2 1 4 4 H 1.09001 * 109.47482 * 305.00098 * 3 2 1 5 5 C 1.53007 * 109.46817 * 185.00178 * 3 2 1 6 6 O 1.42897 * 109.47531 * 65.00265 * 3 2 1 7 7 C 1.35707 * 117.00518 * 206.90237 * 6 3 2 8 8 C 1.39000 * 119.90772 * 358.31924 * 7 6 3 9 9 C 1.37709 * 120.08308 * 180.30192 * 8 7 6 10 10 C 1.39729 * 119.91024 * 359.44158 * 9 8 7 11 11 C 1.47612 * 120.08372 * 180.30122 * 10 9 8 12 12 O 1.21575 * 119.99983 * 327.90419 * 11 10 9 13 13 N 1.34776 * 119.99692 * 147.89981 * 11 10 9 14 14 C 1.46506 * 120.00134 * 3.63942 * 13 11 10 15 15 C 1.46502 * 119.99745 * 183.63147 * 13 11 10 16 16 C 1.50698 * 109.47051 * 90.00545 * 15 13 11 17 17 H 1.08000 * 120.00103 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99840 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99934 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99742 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46876 * 60.00579 * 20 18 16 22 22 H 1.48498 * 109.47079 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47163 * 300.00548 * 20 18 16 24 24 C 1.39731 * 119.82817 * 0.27954 * 10 9 8 25 25 C 1.37695 * 119.90863 * 359.97438 * 24 10 9 26 26 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47349 * 300.00347 * 1 2 3 28 28 H 1.09001 * 109.47064 * 59.99859 * 1 2 3 29 29 H 1.08999 * 109.46944 * 240.00513 * 2 1 3 30 30 H 1.09001 * 109.47064 * 120.00141 * 2 1 3 31 31 H 1.08999 * 109.46750 * 299.99745 * 5 3 2 32 32 H 1.08996 * 109.47403 * 59.99728 * 5 3 2 33 33 H 1.09006 * 109.47080 * 180.02562 * 5 3 2 34 34 H 1.07999 * 119.96111 * 0.02562 * 8 7 6 35 35 H 1.08003 * 120.04015 * 179.72191 * 9 8 7 36 36 H 1.08998 * 109.47502 * 95.76503 * 14 13 11 37 37 H 1.09000 * 109.46758 * 215.76841 * 14 13 11 38 38 H 1.09002 * 109.46666 * 335.76192 * 14 13 11 39 39 H 1.09006 * 109.46897 * 210.00004 * 15 13 11 40 40 H 1.08993 * 109.47301 * 330.00005 * 15 13 11 41 41 H 0.97003 * 119.99638 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.04234 * 180.02562 * 24 10 9 43 43 H 1.08001 * 119.95337 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6619 2.0814 1.2210 7 6 1.5135 3.4300 1.1905 8 6 1.7621 4.1282 0.0146 9 6 1.6186 5.4974 -0.0187 10 6 1.2112 6.1834 1.1285 11 6 1.0497 7.6503 1.0952 12 8 1.7619 8.3241 0.3763 13 7 0.1128 8.2425 1.8619 14 6 -0.6913 7.4400 2.7870 15 6 -0.1016 9.6889 1.7701 16 6 -1.1416 9.9769 0.7183 17 1 -1.5971 9.1639 0.1724 18 6 -1.5117 11.2782 0.4528 19 7 -0.9567 12.2682 1.1173 20 14 -2.8004 11.6352 -0.8515 21 1 -4.0750 10.9677 -0.4838 22 1 -3.0178 13.1013 -0.9445 23 1 -2.3326 11.1205 -2.1635 24 6 0.9566 5.4771 2.3070 25 6 1.1075 4.1087 2.3336 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9994 0.9053 0.7161 32 1 3.8532 0.9570 -1.0571 33 1 3.9282 2.4721 -0.1253 34 1 2.0726 3.5968 -0.8728 35 1 1.8164 6.0397 -0.9315 36 1 -0.2454 7.4758 3.7810 37 1 -1.7044 7.8399 2.8287 38 1 -0.7223 6.4074 2.4396 39 1 -0.4445 10.0672 2.7332 40 1 0.8339 10.1784 1.4998 41 1 -1.2169 13.1838 0.9302 42 1 0.6411 6.0038 3.1955 43 1 0.9105 3.5621 3.2439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267368328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -40.180023 kcal Electronic energy + Delta-G solvation = -22976.861187 eV Core-core repulsion = 19601.962890 eV Total energy + Delta-G solvation = -3374.898297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56239 -39.24661 -37.15920 -34.92935 -34.41984 -32.67419 -31.18488 -30.36314 -29.92884 -27.59473 -26.08111 -24.44283 -23.57812 -23.14963 -21.94830 -20.82685 -19.14527 -18.35177 -16.71837 -16.50418 -16.08199 -15.61075 -15.33492 -14.89577 -14.59517 -14.39008 -14.26035 -13.89384 -13.66988 -13.44343 -13.25566 -13.16822 -12.70862 -12.27849 -12.24061 -12.15123 -12.10890 -11.83663 -11.56112 -11.41315 -11.21744 -11.01375 -10.91549 -10.78118 -10.57997 -10.48853 -10.15105 -9.64221 -9.01506 -8.92575 -8.42385 -8.13381 -7.62596 -6.03231 -4.08209 1.17880 1.38435 2.98915 3.32749 3.34783 3.37181 3.41320 3.88053 4.17455 4.31239 4.45750 4.53869 4.64031 4.79990 4.86524 4.96094 5.09605 5.12554 5.22486 5.25119 5.31093 5.32246 5.46497 5.50575 5.59295 5.61323 5.71278 5.78006 5.81497 5.87740 5.95846 6.04063 6.21030 6.24771 6.32869 6.53174 6.68543 7.08886 7.32972 7.46024 7.54328 7.93228 8.24203 8.41290 8.90392 9.09178 9.56759 11.04837 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.003161 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.768230 B = 8855.748898 C = 9074.729786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.077 0.923 5 C -0.180 4.180 6 O -0.307 6.307 7 C 0.144 3.856 8 C -0.222 4.222 9 C -0.025 4.025 10 C -0.156 4.156 11 C 0.548 3.452 12 O -0.541 6.541 13 N -0.594 5.594 14 C 0.066 3.934 15 C 0.245 3.755 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.063 4.063 25 C -0.165 4.165 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.150 0.850 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 -24.439 1.064 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.021 3.979 4 H 0.095 0.905 5 C -0.237 4.237 6 O -0.221 6.221 7 C 0.099 3.901 8 C -0.240 4.240 9 C -0.044 4.044 10 C -0.160 4.160 11 C 0.336 3.664 12 O -0.420 6.420 13 N -0.325 5.325 14 C -0.078 4.078 15 C 0.126 3.874 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.081 4.081 25 C -0.183 4.183 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.167 0.833 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.572 -23.975 0.879 24.423 hybrid contribution -0.736 0.334 -0.916 1.222 sum 3.836 -23.641 -0.037 23.950 Atomic orbital electron populations 1.21772 0.95048 1.01857 1.02575 1.21636 0.96915 0.93922 1.03111 1.22557 0.95145 0.93915 0.86327 0.90519 1.22355 0.95110 1.03376 1.02871 1.86057 1.83331 1.17306 1.35371 1.19183 0.94380 0.82390 0.94191 1.21172 1.09878 0.95084 0.97879 1.21024 0.92623 0.92864 0.97914 1.20145 1.06096 0.94613 0.95129 1.18092 0.81134 0.86441 0.80778 1.90744 1.45347 1.65100 1.40776 1.48048 1.34683 1.10973 1.38841 1.22262 0.96833 0.96337 0.92366 1.19319 0.97983 0.72891 0.97236 1.21406 1.22167 0.92426 1.20714 0.92467 1.24936 0.96747 0.95973 0.96419 1.69924 1.42749 0.99388 1.41308 0.86548 0.81590 0.77074 0.82152 1.20221 1.21150 1.20171 1.21762 0.94764 0.93161 0.98392 1.20328 1.06861 0.93819 0.97333 0.92471 0.91860 0.92721 0.90132 0.90813 0.91449 0.91022 0.91597 0.85111 0.84837 0.93229 0.91022 0.90602 0.94839 0.93593 0.92636 0.83314 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.81 37.16 0.36 -0.75 16 2 C -0.12 -0.80 5.64 -26.73 -0.15 -0.95 16 3 C 0.08 0.64 2.22 -26.73 -0.06 0.59 16 4 H 0.08 0.63 5.97 -51.93 -0.31 0.32 16 5 C -0.18 -1.34 9.28 37.16 0.34 -0.99 16 6 O -0.31 -3.40 9.32 -18.82 -0.18 -3.58 16 7 C 0.14 1.80 6.63 -39.02 -0.26 1.54 16 8 C -0.22 -2.83 8.40 -39.49 -0.33 -3.16 16 9 C -0.03 -0.40 9.59 -39.22 -0.38 -0.77 16 10 C -0.16 -2.71 5.46 -104.96 -0.57 -3.29 16 11 C 0.55 12.20 7.43 -12.44 -0.09 12.11 16 12 O -0.54 -14.30 16.31 5.30 0.09 -14.21 16 13 N -0.59 -13.13 2.86 -184.16 -0.53 -13.65 16 14 C 0.07 1.07 8.81 59.85 0.53 1.60 16 15 C 0.24 6.55 5.21 -5.19 -0.03 6.52 16 16 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 20 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.06 -0.87 7.41 -39.22 -0.29 -1.16 16 25 C -0.16 -2.04 9.97 -39.50 -0.39 -2.44 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.56 7.41 -51.93 -0.38 0.18 16 34 H 0.13 1.36 5.61 -52.49 -0.29 1.06 16 35 H 0.13 2.13 7.95 -52.48 -0.42 1.72 16 36 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 37 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.08 1.08 4.68 -51.93 -0.24 0.84 16 39 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.15 1.84 4.86 -52.49 -0.26 1.59 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -33.89 351.69 -7.76 -41.66 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.43 Total: -1.38 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.74 Total: -5.05 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.21 Total: -39.78 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.09 Total: -17.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.89 -7.76 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267368328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.475 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds