Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46761 * 2 1 4 4 H 1.09001 * 109.47482 * 305.00098 * 3 2 1 5 5 C 1.53007 * 109.46817 * 185.00178 * 3 2 1 6 6 O 1.42897 * 109.47531 * 65.00265 * 3 2 1 7 7 C 1.35707 * 117.00518 * 206.90237 * 6 3 2 8 8 C 1.39000 * 119.90772 * 358.31924 * 7 6 3 9 9 C 1.37709 * 120.08308 * 180.30192 * 8 7 6 10 10 C 1.39729 * 119.91024 * 359.44158 * 9 8 7 11 11 C 1.47612 * 120.08372 * 180.30122 * 10 9 8 12 12 O 1.21575 * 119.99983 * 327.90419 * 11 10 9 13 13 N 1.34776 * 119.99692 * 147.89981 * 11 10 9 14 14 C 1.46506 * 120.00134 * 3.63942 * 13 11 10 15 15 C 1.46502 * 119.99745 * 183.63147 * 13 11 10 16 16 C 1.50698 * 109.47051 * 90.00545 * 15 13 11 17 17 H 1.08000 * 120.00103 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99840 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99934 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99742 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46876 * 60.00579 * 20 18 16 22 22 H 1.48498 * 109.47079 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47163 * 300.00548 * 20 18 16 24 24 C 1.39731 * 119.82817 * 0.27954 * 10 9 8 25 25 C 1.37695 * 119.90863 * 359.97438 * 24 10 9 26 26 H 1.09001 * 109.47440 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47349 * 300.00347 * 1 2 3 28 28 H 1.09001 * 109.47064 * 59.99859 * 1 2 3 29 29 H 1.08999 * 109.46944 * 240.00513 * 2 1 3 30 30 H 1.09001 * 109.47064 * 120.00141 * 2 1 3 31 31 H 1.08999 * 109.46750 * 299.99745 * 5 3 2 32 32 H 1.08996 * 109.47403 * 59.99728 * 5 3 2 33 33 H 1.09006 * 109.47080 * 180.02562 * 5 3 2 34 34 H 1.07999 * 119.96111 * 0.02562 * 8 7 6 35 35 H 1.08003 * 120.04015 * 179.72191 * 9 8 7 36 36 H 1.08998 * 109.47502 * 95.76503 * 14 13 11 37 37 H 1.09000 * 109.46758 * 215.76841 * 14 13 11 38 38 H 1.09002 * 109.46666 * 335.76192 * 14 13 11 39 39 H 1.09006 * 109.46897 * 210.00004 * 15 13 11 40 40 H 1.08993 * 109.47301 * 330.00005 * 15 13 11 41 41 H 0.97003 * 119.99638 * 179.97438 * 19 18 16 42 42 H 1.07998 * 120.04234 * 180.02562 * 24 10 9 43 43 H 1.08001 * 119.95337 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6619 2.0814 1.2210 7 6 1.5135 3.4300 1.1905 8 6 1.7621 4.1282 0.0146 9 6 1.6186 5.4974 -0.0187 10 6 1.2112 6.1834 1.1285 11 6 1.0497 7.6503 1.0952 12 8 1.7619 8.3241 0.3763 13 7 0.1128 8.2425 1.8619 14 6 -0.6913 7.4400 2.7870 15 6 -0.1016 9.6889 1.7701 16 6 -1.1416 9.9769 0.7183 17 1 -1.5971 9.1639 0.1724 18 6 -1.5117 11.2782 0.4528 19 7 -0.9567 12.2682 1.1173 20 14 -2.8004 11.6352 -0.8515 21 1 -4.0750 10.9677 -0.4838 22 1 -3.0178 13.1013 -0.9445 23 1 -2.3326 11.1205 -2.1635 24 6 0.9566 5.4771 2.3070 25 6 1.1075 4.1087 2.3336 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9994 0.9053 0.7161 32 1 3.8532 0.9570 -1.0571 33 1 3.9282 2.4721 -0.1253 34 1 2.0726 3.5968 -0.8728 35 1 1.8164 6.0397 -0.9315 36 1 -0.2454 7.4758 3.7810 37 1 -1.7044 7.8399 2.8287 38 1 -0.7223 6.4074 2.4396 39 1 -0.4445 10.0672 2.7332 40 1 0.8339 10.1784 1.4998 41 1 -1.2169 13.1838 0.9302 42 1 0.6411 6.0038 3.1955 43 1 0.9105 3.5621 3.2439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267368328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = -60.862684 kcal Electronic energy + Delta-G solvation = -22977.758054 eV Core-core repulsion = 19601.962890 eV Total energy + Delta-G solvation = -3375.795165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65295 -40.62760 -38.36283 -36.74220 -35.17275 -34.74635 -32.29363 -31.49396 -30.75297 -29.41655 -27.65705 -25.64492 -24.89059 -24.04039 -23.39821 -21.62794 -20.65054 -19.29956 -18.71304 -18.15067 -17.41780 -16.84045 -16.48153 -16.32125 -16.03676 -15.76179 -15.30446 -14.90394 -14.73106 -14.44894 -14.41696 -14.16658 -14.08264 -13.85104 -13.58845 -13.34572 -13.24875 -12.97193 -12.81187 -12.73278 -12.61598 -12.44194 -12.22371 -11.97244 -11.86973 -11.76354 -11.56382 -11.40270 -10.74818 -10.66001 -10.03166 -9.52309 -9.18112 -8.24168 -6.39761 -0.00864 0.30782 1.35626 1.40283 1.47775 1.87394 2.15892 2.28773 2.42783 2.80431 3.05055 3.66587 3.68120 3.79811 3.82463 3.98654 4.08290 4.18833 4.29101 4.39916 4.45035 4.53304 4.62194 4.66152 4.69877 4.77441 4.90597 4.94468 4.96039 4.99793 5.10118 5.11807 5.18667 5.22740 5.25700 5.27256 5.41370 5.43287 5.52235 5.63534 5.80836 6.03267 6.41019 6.65797 6.71706 7.23809 7.40213 8.82935 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025806 B = 0.003161 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.768230 B = 8855.748898 C = 9074.729786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C 0.067 3.933 4 H 0.080 0.920 5 C -0.178 4.178 6 O -0.308 6.308 7 C 0.155 3.845 8 C -0.214 4.214 9 C -0.038 4.038 10 C -0.184 4.184 11 C 0.540 3.460 12 O -0.601 6.601 13 N -0.601 5.601 14 C 0.060 3.940 15 C 0.258 3.742 16 C -0.548 4.548 17 H 0.052 0.948 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.278 1.278 24 C -0.054 4.054 25 C -0.158 4.158 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.155 0.845 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.029 0.971 40 H -0.001 1.001 41 H 0.269 0.731 42 H 0.166 0.834 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -27.668 1.178 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C 0.011 3.989 4 H 0.097 0.903 5 C -0.235 4.235 6 O -0.221 6.221 7 C 0.108 3.892 8 C -0.232 4.232 9 C -0.057 4.057 10 C -0.188 4.188 11 C 0.331 3.669 12 O -0.484 6.484 13 N -0.331 5.331 14 C -0.081 4.081 15 C 0.137 3.863 16 C -0.587 4.587 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.203 1.203 24 C -0.072 4.072 25 C -0.177 4.177 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.172 0.828 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.047 0.953 40 H 0.017 0.983 41 H 0.077 0.923 42 H 0.184 0.816 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.579 -27.257 1.030 27.510 hybrid contribution -0.365 1.173 -0.932 1.542 sum 3.214 -26.084 0.098 26.281 Atomic orbital electron populations 1.21785 0.95486 1.02411 1.01722 1.21667 0.96460 0.92759 1.04286 1.22876 0.95941 0.94730 0.85304 0.90261 1.22355 0.94208 1.02837 1.04121 1.86084 1.82843 1.16216 1.36997 1.19338 0.92705 0.83213 0.93911 1.21303 1.09036 0.93707 0.99194 1.20996 0.93432 0.94135 0.97110 1.19801 1.10043 0.91442 0.97486 1.18910 0.80014 0.88547 0.79456 1.90688 1.47550 1.66948 1.43244 1.48052 1.35464 1.09633 1.39967 1.22601 0.95963 0.96749 0.92786 1.18811 0.95162 0.75927 0.96386 1.21667 1.22776 0.92779 1.21432 0.92975 1.25881 0.98946 0.95640 0.98616 1.70045 1.44037 0.99874 1.42734 0.85442 0.79140 0.77408 0.78672 1.18350 1.20083 1.20342 1.21844 0.94077 0.93824 0.97459 1.20619 1.05538 0.93086 0.98428 0.91306 0.93380 0.92874 0.87965 0.90617 0.91308 0.88920 0.92909 0.82796 0.86393 0.89946 0.91490 0.87913 0.95290 0.98255 0.92261 0.81645 0.81958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.81 71.98 0.71 -1.13 16 2 C -0.11 -1.16 5.64 30.59 0.17 -0.99 16 3 C 0.07 0.92 2.22 30.60 0.07 0.99 16 4 H 0.08 1.07 5.97 -2.39 -0.01 1.06 16 5 C -0.18 -2.14 9.28 71.98 0.67 -1.47 16 6 O -0.31 -5.86 9.32 -90.27 -0.84 -6.70 16 7 C 0.15 3.45 6.63 22.63 0.15 3.60 16 8 C -0.21 -5.13 8.40 22.33 0.19 -4.94 16 9 C -0.04 -1.19 9.59 22.50 0.22 -0.97 16 10 C -0.18 -6.44 5.46 -20.08 -0.11 -6.55 16 11 C 0.54 25.16 7.43 86.72 0.64 25.81 16 12 O -0.60 -34.10 16.31 -3.95 -0.06 -34.16 16 13 N -0.60 -27.41 2.86 -854.83 -2.44 -29.85 16 14 C 0.06 1.92 8.81 127.77 1.13 3.04 16 15 C 0.26 14.54 5.21 85.63 0.45 14.99 16 16 C -0.55 -32.68 9.39 25.60 0.24 -32.44 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C 0.01 0.49 5.46 84.66 0.46 0.95 16 19 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 20 Si 0.97 45.67 29.54 68.60 2.03 47.70 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 C -0.05 -1.40 7.41 22.50 0.17 -1.23 16 25 C -0.16 -3.41 9.97 22.32 0.22 -3.19 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.78 7.41 -2.38 -0.02 0.77 16 34 H 0.15 2.88 5.61 -2.91 -0.02 2.86 16 35 H 0.12 4.01 7.95 -2.91 -0.02 3.99 16 36 H 0.08 2.08 7.47 -2.39 -0.02 2.07 16 37 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 38 H 0.10 2.72 4.68 -2.39 -0.01 2.71 16 39 H 0.03 1.63 8.07 -2.38 -0.02 1.61 16 40 H 0.00 -0.04 7.37 -2.39 -0.02 -0.06 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 42 H 0.17 3.64 4.86 -2.91 -0.01 3.63 16 43 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.71 351.69 5.33 -72.38 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.00 Total: 11.02 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.37 Total: -3.54 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.16 Total: -86.69 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.91 Total: -40.86 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.71 5.33 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267368328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.515 kcal (2) G-P(sol) polarization free energy of solvation -77.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds