Wall clock time and date at job start Tue Mar 31 2020 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.09001 * 109.47180 * 305.43660 * 3 2 1 5 5 O 1.42902 * 109.47019 * 65.43734 * 3 2 1 6 6 C 1.35900 * 116.99891 * 263.70983 * 5 3 2 7 7 C 1.38750 * 120.05430 * 355.93118 * 6 5 3 8 8 C 1.38124 * 119.94263 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.06068 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.10576 * 0.02562 * 9 8 7 11 11 C 1.38166 * 120.05259 * 359.68148 * 10 9 8 12 12 C 1.50707 * 120.02456 * 180.29691 * 11 10 9 13 13 C 1.50702 * 109.47144 * 185.43237 * 3 2 1 14 14 O 1.21291 * 120.00207 * 250.39608 * 13 3 2 15 15 N 1.34778 * 119.99574 * 70.39998 * 13 3 2 16 16 C 1.37092 * 119.99870 * 185.70711 * 15 13 3 17 17 H 1.07999 * 120.00302 * 317.29220 * 16 15 13 18 18 C 1.38952 * 120.00089 * 137.29105 * 16 15 13 19 19 N 1.31409 * 120.00238 * 352.05100 * 18 16 15 20 20 Si 1.86803 * 120.00175 * 172.04844 * 18 16 15 21 21 H 1.48501 * 109.46987 * 89.99997 * 20 18 16 22 22 H 1.48494 * 109.47161 * 210.00102 * 20 18 16 23 23 H 1.48504 * 109.47255 * 330.00243 * 20 18 16 24 24 C 1.46502 * 120.00133 * 5.70752 * 15 13 3 25 25 C 1.52994 * 109.47158 * 90.11805 * 24 15 13 26 26 H 1.09002 * 109.46967 * 299.99937 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99416 * 1 2 3 28 28 H 1.08993 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46990 * 120.00067 * 2 1 3 30 30 H 1.08993 * 109.46951 * 240.00248 * 2 1 3 31 31 H 1.07992 * 120.03310 * 0.03061 * 7 6 5 32 32 H 1.08001 * 119.97622 * 180.02562 * 8 7 6 33 33 H 1.07990 * 119.94979 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96834 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.46765 * 270.31768 * 12 11 10 36 36 H 1.08996 * 109.46780 * 30.31845 * 12 11 10 37 37 H 1.08996 * 109.46952 * 150.31670 * 12 11 10 38 38 H 0.96993 * 120.00389 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46898 * 210.11875 * 24 15 13 40 40 H 1.08999 * 109.46950 * 330.11332 * 24 15 13 41 41 H 1.09002 * 109.47273 * 299.99840 * 25 24 15 42 42 H 1.09002 * 109.46881 * 60.00121 * 25 24 15 43 43 H 1.08997 * 109.47184 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9837 -0.8373 5 8 1.6708 2.0783 1.2254 6 6 0.5383 2.8295 1.2139 7 6 -0.1563 3.0213 0.0282 8 6 -1.3067 3.7857 0.0190 9 6 -1.7662 4.3600 1.1901 10 6 -1.0753 4.1711 2.3727 11 6 0.0727 3.4024 2.3882 12 6 0.8216 3.1915 3.6789 13 6 3.5410 1.4446 -0.1345 14 8 4.2339 1.7665 0.8075 15 7 4.1134 1.0889 -1.3017 16 6 5.4769 0.9775 -1.3905 17 1 6.1107 1.7216 -0.9310 18 6 6.0436 -0.0928 -2.0718 19 7 5.2845 -1.0781 -2.4955 20 14 7.8848 -0.1309 -2.3855 21 1 8.5655 -0.8115 -1.2548 22 1 8.1572 -0.8698 -3.6444 23 1 8.3952 1.2584 -2.5066 24 6 3.2786 0.8213 -2.4755 25 6 3.0792 2.1163 -3.2654 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.2022 2.5734 -0.8868 32 1 -1.8480 3.9350 -0.9036 33 1 -2.6656 4.9576 1.1809 34 1 -1.4359 4.6210 3.2859 35 1 1.5620 3.9818 3.8026 36 1 0.1211 3.2159 4.5135 37 1 1.3234 2.2242 3.6538 38 1 5.6801 -1.8254 -2.9708 39 1 3.7683 0.0813 -3.1085 40 1 2.3099 0.4396 -2.1529 41 1 2.5895 2.8563 -2.6323 42 1 4.0479 2.4980 -3.5879 43 1 2.4584 1.9172 -4.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267515011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:19 Heat of formation + Delta-G solvation = -43.848207 kcal Electronic energy + Delta-G solvation = -24396.477670 eV Core-core repulsion = 21021.420308 eV Total energy + Delta-G solvation = -3375.057362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42293 -38.68388 -36.99714 -34.98918 -33.55924 -32.39195 -31.81069 -29.97564 -29.49688 -27.51454 -26.52124 -24.69226 -22.89069 -22.40318 -21.40343 -20.92448 -19.17208 -17.94560 -16.82673 -16.04805 -15.65846 -15.57952 -15.34298 -14.93182 -14.19658 -14.11697 -13.89310 -13.62150 -13.30021 -13.04627 -12.89339 -12.76729 -12.42199 -12.13724 -12.05958 -11.94081 -11.74156 -11.59610 -11.45751 -11.25589 -11.09045 -11.05736 -10.77436 -10.60387 -10.52196 -10.32730 -10.09688 -9.97222 -8.97357 -8.70565 -8.42813 -7.82004 -7.45237 -6.31015 -4.10077 1.42566 1.59426 3.16624 3.23922 3.26510 3.41240 3.76131 3.87507 4.17466 4.78690 4.86866 4.94903 4.98687 5.06208 5.22255 5.31255 5.36430 5.38275 5.48178 5.60722 5.73604 5.78220 5.80646 5.86658 5.91263 5.97313 5.99091 6.17986 6.22030 6.24895 6.32536 6.38011 6.41336 6.48363 6.59377 6.63438 6.65704 6.86869 6.94999 7.27051 7.57084 7.70987 8.26831 8.49303 9.13289 9.32023 9.92861 10.70111 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.004530 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.518169 B = 6179.716010 C = 6519.086111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.067 3.933 4 H 0.088 0.912 5 O -0.278 6.278 6 C 0.143 3.857 7 C -0.212 4.212 8 C -0.085 4.085 9 C -0.166 4.166 10 C -0.085 4.085 11 C -0.123 4.123 12 C -0.104 4.104 13 C 0.467 3.533 14 O -0.559 6.559 15 N -0.437 5.437 16 C -0.301 4.301 17 H 0.088 0.912 18 C 0.038 3.962 19 N -0.880 5.880 20 Si 0.925 3.075 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.080 3.920 25 C -0.164 4.164 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.268 0.732 39 H 0.123 0.877 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.637 5.024 1.771 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C 0.008 3.992 4 H 0.105 0.895 5 O -0.190 6.190 6 C 0.096 3.904 7 C -0.230 4.230 8 C -0.103 4.103 9 C -0.185 4.185 10 C -0.103 4.103 11 C -0.124 4.124 12 C -0.161 4.161 13 C 0.253 3.747 14 O -0.440 6.440 15 N -0.158 5.158 16 C -0.429 4.429 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.519 5.519 20 Si 0.751 3.249 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.044 4.044 25 C -0.222 4.222 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.090 4.956 2.293 14.184 hybrid contribution 0.651 -0.122 -0.617 0.905 sum -12.439 4.834 1.677 13.450 Atomic orbital electron populations 1.21887 0.95424 1.01824 1.01751 1.22037 0.95979 0.94960 1.04782 1.22573 0.96360 0.94113 0.86196 0.89464 1.86242 1.37863 1.60344 1.34514 1.19004 0.86653 0.91209 0.93529 1.21347 0.98682 1.05220 0.97785 1.20861 0.95353 0.96068 0.98055 1.20936 1.01269 1.03335 0.92934 1.20819 0.94076 0.97259 0.98176 1.19278 0.97591 1.01409 0.94096 1.20594 0.99308 1.03282 0.92927 1.20086 0.87357 0.83307 0.83960 1.90550 1.63899 1.50747 1.38769 1.43305 1.06213 1.60513 1.05808 1.19401 0.80482 1.07988 1.35051 0.89436 1.25472 0.99965 0.93959 0.97132 1.69672 1.35706 1.08527 1.37949 0.85960 0.82577 0.78585 0.77754 1.20213 1.20841 1.19414 1.21949 0.94478 0.97691 0.90259 1.22195 1.01568 0.99026 0.99440 0.92603 0.92707 0.92358 0.90552 0.88584 0.85101 0.86180 0.86376 0.85835 0.91430 0.92151 0.90837 0.92135 0.85977 0.92958 0.94470 0.92165 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.55 37.16 0.32 -1.81 16 2 C -0.14 -2.46 5.23 -26.73 -0.14 -2.60 16 3 C 0.07 1.33 1.72 -27.88 -0.05 1.28 16 4 H 0.09 1.56 3.91 -51.93 -0.20 1.35 16 5 O -0.28 -5.55 8.24 -39.12 -0.32 -5.88 16 6 C 0.14 2.40 5.30 -39.22 -0.21 2.19 16 7 C -0.21 -3.11 7.47 -39.43 -0.29 -3.40 16 8 C -0.09 -1.05 10.04 -39.60 -0.40 -1.45 16 9 C -0.17 -1.94 10.04 -39.56 -0.40 -2.33 16 10 C -0.09 -1.06 9.70 -39.60 -0.38 -1.44 16 11 C -0.12 -1.84 5.89 -104.47 -0.62 -2.46 16 12 C -0.10 -1.45 9.79 36.01 0.35 -1.09 16 13 C 0.47 11.70 6.96 -10.98 -0.08 11.63 16 14 O -0.56 -16.28 16.44 -14.14 -0.23 -16.52 16 15 N -0.44 -10.94 2.50 -114.81 -0.29 -11.23 16 16 C -0.30 -8.26 8.90 -14.94 -0.13 -8.39 16 17 H 0.09 2.52 7.75 -52.49 -0.41 2.11 16 18 C 0.04 0.98 5.23 -17.47 -0.09 0.89 16 19 N -0.88 -22.89 11.04 55.50 0.61 -22.28 16 20 Si 0.92 20.53 29.56 -169.99 -5.02 15.50 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.08 1.68 5.12 -4.04 -0.02 1.66 16 25 C -0.16 -2.95 10.17 37.15 0.38 -2.57 16 26 H 0.05 0.81 6.47 -51.93 -0.34 0.48 16 27 H 0.05 0.69 7.14 -51.93 -0.37 0.32 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.10 1.74 5.82 -51.93 -0.30 1.44 16 31 H 0.13 1.85 4.83 -52.49 -0.25 1.60 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.07 1.14 7.53 -51.93 -0.39 0.75 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.12 2.85 5.37 -51.93 -0.28 2.57 16 40 H 0.05 0.98 4.41 -51.93 -0.23 0.75 16 41 H 0.04 0.64 7.52 -51.93 -0.39 0.24 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -31.01 341.25 -7.97 -38.98 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.10 Total: 6.16 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.76 Total: -9.89 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.33 Total: -33.51 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.55 Total: -22.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.01 -7.97 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267515011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.866 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds