Wall clock time and date at job start Tue Mar 31 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.09001 * 109.47180 * 305.43660 * 3 2 1 5 5 O 1.42902 * 109.47019 * 65.43734 * 3 2 1 6 6 C 1.35900 * 116.99891 * 263.70983 * 5 3 2 7 7 C 1.38750 * 120.05430 * 355.93118 * 6 5 3 8 8 C 1.38124 * 119.94263 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.06068 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.10576 * 0.02562 * 9 8 7 11 11 C 1.38166 * 120.05259 * 359.68148 * 10 9 8 12 12 C 1.50707 * 120.02456 * 180.29691 * 11 10 9 13 13 C 1.50702 * 109.47144 * 185.43237 * 3 2 1 14 14 O 1.21291 * 120.00207 * 250.39608 * 13 3 2 15 15 N 1.34778 * 119.99574 * 70.39998 * 13 3 2 16 16 C 1.37092 * 119.99870 * 185.70711 * 15 13 3 17 17 H 1.07999 * 120.00302 * 317.29220 * 16 15 13 18 18 C 1.38952 * 120.00089 * 137.29105 * 16 15 13 19 19 N 1.31409 * 120.00238 * 352.05100 * 18 16 15 20 20 Si 1.86803 * 120.00175 * 172.04844 * 18 16 15 21 21 H 1.48501 * 109.46987 * 89.99997 * 20 18 16 22 22 H 1.48494 * 109.47161 * 210.00102 * 20 18 16 23 23 H 1.48504 * 109.47255 * 330.00243 * 20 18 16 24 24 C 1.46502 * 120.00133 * 5.70752 * 15 13 3 25 25 C 1.52994 * 109.47158 * 90.11805 * 24 15 13 26 26 H 1.09002 * 109.46967 * 299.99937 * 1 2 3 27 27 H 1.09000 * 109.47187 * 59.99416 * 1 2 3 28 28 H 1.08993 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46990 * 120.00067 * 2 1 3 30 30 H 1.08993 * 109.46951 * 240.00248 * 2 1 3 31 31 H 1.07992 * 120.03310 * 0.03061 * 7 6 5 32 32 H 1.08001 * 119.97622 * 180.02562 * 8 7 6 33 33 H 1.07990 * 119.94979 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.96834 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.46765 * 270.31768 * 12 11 10 36 36 H 1.08996 * 109.46780 * 30.31845 * 12 11 10 37 37 H 1.08996 * 109.46952 * 150.31670 * 12 11 10 38 38 H 0.96993 * 120.00389 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46898 * 210.11875 * 24 15 13 40 40 H 1.08999 * 109.46950 * 330.11332 * 24 15 13 41 41 H 1.09002 * 109.47273 * 299.99840 * 25 24 15 42 42 H 1.09002 * 109.46881 * 60.00121 * 25 24 15 43 43 H 1.08997 * 109.47184 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5994 1.9837 -0.8373 5 8 1.6708 2.0783 1.2254 6 6 0.5383 2.8295 1.2139 7 6 -0.1563 3.0213 0.0282 8 6 -1.3067 3.7857 0.0190 9 6 -1.7662 4.3600 1.1901 10 6 -1.0753 4.1711 2.3727 11 6 0.0727 3.4024 2.3882 12 6 0.8216 3.1915 3.6789 13 6 3.5410 1.4446 -0.1345 14 8 4.2339 1.7665 0.8075 15 7 4.1134 1.0889 -1.3017 16 6 5.4769 0.9775 -1.3905 17 1 6.1107 1.7216 -0.9310 18 6 6.0436 -0.0928 -2.0718 19 7 5.2845 -1.0781 -2.4955 20 14 7.8848 -0.1309 -2.3855 21 1 8.5655 -0.8115 -1.2548 22 1 8.1572 -0.8698 -3.6444 23 1 8.3952 1.2584 -2.5066 24 6 3.2786 0.8213 -2.4755 25 6 3.0792 2.1163 -3.2654 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 0.2022 2.5734 -0.8868 32 1 -1.8480 3.9350 -0.9036 33 1 -2.6656 4.9576 1.1809 34 1 -1.4359 4.6210 3.2859 35 1 1.5620 3.9818 3.8026 36 1 0.1211 3.2159 4.5135 37 1 1.3234 2.2242 3.6538 38 1 5.6801 -1.8254 -2.9708 39 1 3.7683 0.0813 -3.1085 40 1 2.3099 0.4396 -2.1529 41 1 2.5895 2.8563 -2.6323 42 1 4.0479 2.4980 -3.5879 43 1 2.4584 1.9172 -4.1389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267515011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:18 Heat of formation + Delta-G solvation = -60.406083 kcal Electronic energy + Delta-G solvation = -24397.195673 eV Core-core repulsion = 21021.420308 eV Total energy + Delta-G solvation = -3375.775365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78283 -40.28746 -38.34463 -36.95401 -34.97248 -33.81998 -33.35195 -31.23002 -31.05566 -29.00971 -27.62900 -26.53038 -24.23711 -23.88467 -22.52688 -22.34288 -20.81131 -19.27511 -18.76090 -17.73048 -17.21576 -16.88555 -16.59667 -16.43503 -15.86647 -15.63659 -15.32203 -14.88200 -14.70484 -14.52238 -14.32710 -13.99549 -13.71291 -13.65550 -13.54862 -13.19458 -13.15192 -12.95944 -12.89784 -12.81646 -12.60818 -12.36068 -12.28583 -12.12352 -12.05441 -11.91154 -11.64616 -11.37971 -10.92767 -10.35582 -9.70812 -9.43616 -8.98882 -8.30962 -6.19221 0.42100 0.54442 1.36595 1.39761 1.51092 1.88436 1.96274 2.35328 2.85013 2.98294 3.11601 3.59397 3.78337 3.82920 3.92204 4.00519 4.14920 4.25817 4.30081 4.41415 4.45266 4.51918 4.58785 4.68525 4.74718 4.78293 4.78770 4.80412 4.93616 5.00431 5.03073 5.05490 5.28278 5.30827 5.33274 5.39601 5.48618 5.57832 5.60424 5.63907 5.93924 6.21556 6.42628 6.59368 7.12309 7.35801 7.96219 8.67651 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.004530 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.518169 B = 6179.716010 C = 6519.086111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.084 3.916 4 H 0.109 0.891 5 O -0.309 6.309 6 C 0.104 3.896 7 C -0.219 4.219 8 C -0.084 4.084 9 C -0.157 4.157 10 C -0.083 4.083 11 C -0.143 4.143 12 C -0.102 4.102 13 C 0.447 3.553 14 O -0.618 6.618 15 N -0.443 5.443 16 C -0.340 4.340 17 H 0.058 0.942 18 C 0.009 3.991 19 N -0.889 5.889 20 Si 0.984 3.016 21 H -0.280 1.280 22 H -0.263 1.263 23 H -0.270 1.270 24 C 0.077 3.923 25 C -0.155 4.155 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.276 0.724 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 5.698 0.440 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.024 3.976 4 H 0.126 0.874 5 O -0.222 6.222 6 C 0.059 3.941 7 C -0.237 4.237 8 C -0.102 4.102 9 C -0.175 4.175 10 C -0.101 4.101 11 C -0.144 4.144 12 C -0.159 4.159 13 C 0.235 3.765 14 O -0.504 6.504 15 N -0.163 5.163 16 C -0.468 4.468 17 H 0.076 0.924 18 C -0.194 4.194 19 N -0.527 5.527 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.187 1.187 23 H -0.194 1.194 24 C -0.045 4.045 25 C -0.213 4.213 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.098 5.621 0.919 17.075 hybrid contribution 1.494 -0.287 -0.171 1.531 sum -14.603 5.334 0.748 15.565 Atomic orbital electron populations 1.21804 0.92047 1.03293 1.02448 1.21980 0.98764 0.93188 1.03217 1.22294 0.92191 0.95722 0.87371 0.87399 1.86191 1.40054 1.61597 1.34331 1.19384 0.86648 0.92713 0.95391 1.21448 0.99487 1.05940 0.96863 1.21264 0.94357 0.94751 0.99789 1.21414 1.01761 1.02184 0.92091 1.21193 0.92768 0.96120 1.00000 1.19583 0.98818 1.02270 0.93715 1.20569 0.99726 1.01391 0.94196 1.21073 0.89934 0.82310 0.83176 1.90487 1.65923 1.53383 1.40581 1.43569 1.06002 1.59639 1.07067 1.19342 0.81913 1.08719 1.36806 0.92413 1.26139 1.03943 0.93158 0.96132 1.69749 1.37160 1.08520 1.37281 0.85083 0.77500 0.78590 0.78052 1.20624 1.18721 1.19419 1.22092 0.94600 0.98990 0.88854 1.22110 1.01447 0.97291 1.00484 0.93164 0.90660 0.90463 0.92911 0.89275 0.84987 0.83066 0.82817 0.82906 0.92150 0.89105 0.93673 0.91452 0.87935 0.90560 0.93795 0.94022 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.55 71.98 0.62 -3.05 16 2 C -0.13 -4.77 5.23 30.60 0.16 -4.61 16 3 C 0.08 3.40 1.72 29.85 0.05 3.45 16 4 H 0.11 3.82 3.91 -2.39 -0.01 3.81 16 5 O -0.31 -12.91 8.24 -73.60 -0.61 -13.51 16 6 C 0.10 3.48 5.30 22.51 0.12 3.60 16 7 C -0.22 -6.00 7.47 22.37 0.17 -5.83 16 8 C -0.08 -1.74 10.04 22.26 0.22 -1.52 16 9 C -0.16 -2.95 10.04 22.29 0.22 -2.72 16 10 C -0.08 -1.80 9.70 22.26 0.22 -1.58 16 11 C -0.14 -4.18 5.89 -19.77 -0.12 -4.30 16 12 C -0.10 -2.88 9.79 71.24 0.70 -2.18 16 13 C 0.45 23.66 6.96 87.66 0.61 24.27 16 14 O -0.62 -38.80 16.44 15.76 0.26 -38.54 16 15 N -0.44 -23.10 2.50 -635.54 -1.59 -24.69 16 16 C -0.34 -19.55 8.90 84.04 0.75 -18.81 16 17 H 0.06 3.58 7.75 -2.91 -0.02 3.56 16 18 C 0.01 0.46 5.23 84.93 0.44 0.90 16 19 N -0.89 -46.61 11.04 21.66 0.24 -46.37 16 20 Si 0.98 42.68 29.56 68.60 2.03 44.71 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 C 0.08 3.25 5.12 86.38 0.44 3.70 16 25 C -0.16 -5.41 10.17 71.98 0.73 -4.68 16 26 H 0.05 1.40 6.47 -2.39 -0.02 1.39 16 27 H 0.07 1.68 7.14 -2.39 -0.02 1.66 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.09 3.25 5.82 -2.39 -0.01 3.24 16 31 H 0.13 3.45 4.83 -2.91 -0.01 3.43 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.15 1.84 8.06 -2.92 -0.02 1.81 16 34 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 38 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 39 H 0.10 4.79 5.37 -2.39 -0.01 4.78 16 40 H 0.08 2.80 4.41 -2.39 -0.01 2.79 16 41 H 0.04 1.45 7.52 -2.39 -0.02 1.44 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -72.79 341.25 6.67 -66.12 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.01 Total: 25.64 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 5.33 Total: -13.35 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.35 Total: -71.06 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.35 Total: -52.05 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.79 6.67 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267515011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.716 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds