Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47440 * 2 1 4 4 H 1.08997 * 109.46909 * 53.62906 * 3 2 1 5 5 O 1.42896 * 109.46929 * 293.63128 * 3 2 1 6 6 C 1.35900 * 116.99995 * 93.60746 * 5 3 2 7 7 C 1.38754 * 120.05942 * 2.11407 * 6 5 3 8 8 C 1.38118 * 119.94585 * 179.70180 * 7 6 5 9 9 C 1.38281 * 120.05879 * 0.59193 * 8 7 6 10 10 C 1.38244 * 120.10950 * 359.68458 * 9 8 7 11 11 C 1.38167 * 120.05402 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.02773 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46951 * 173.63032 * 3 2 1 14 14 O 1.21299 * 119.99640 * 108.52665 * 13 3 2 15 15 N 1.34772 * 120.00268 * 288.51782 * 13 3 2 16 16 C 1.37107 * 119.99761 * 355.26712 * 15 13 3 17 17 H 1.07996 * 120.00029 * 12.33081 * 16 15 13 18 18 C 1.38953 * 119.99586 * 192.33506 * 16 15 13 19 19 N 1.31408 * 120.00080 * 17.23742 * 18 16 15 20 20 Si 1.86797 * 119.99617 * 197.22999 * 18 16 15 21 21 H 1.48499 * 109.47554 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46724 * 120.00353 * 20 18 16 23 23 H 1.48501 * 109.47250 * 240.00249 * 20 18 16 24 24 C 1.46502 * 120.00365 * 175.25979 * 15 13 3 25 25 C 1.53005 * 109.46667 * 82.76516 * 24 15 13 26 26 H 1.09001 * 109.46762 * 300.00053 * 1 2 3 27 27 H 1.08995 * 109.47526 * 59.99729 * 1 2 3 28 28 H 1.09002 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46762 * 239.99947 * 2 1 3 30 30 H 1.09000 * 109.47275 * 120.00685 * 2 1 3 31 31 H 1.08010 * 120.02475 * 359.97425 * 7 6 5 32 32 H 1.08001 * 119.97182 * 180.29569 * 8 7 6 33 33 H 1.07996 * 119.94919 * 179.70296 * 9 8 7 34 34 H 1.08004 * 119.97572 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47071 * 269.97524 * 12 11 10 36 36 H 1.09008 * 109.47527 * 29.97384 * 12 11 10 37 37 H 1.08995 * 109.47433 * 149.97203 * 12 11 10 38 38 H 0.96999 * 120.00048 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.47227 * 202.76390 * 24 15 13 40 40 H 1.08991 * 109.47063 * 322.76942 * 24 15 13 41 41 H 1.08998 * 109.47180 * 300.14377 * 25 24 15 42 42 H 1.08992 * 109.46985 * 60.14223 * 25 24 15 43 43 H 1.09002 * 109.46793 * 180.14382 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8275 5 8 1.6897 2.0715 -1.2343 6 6 0.5281 2.7766 -1.2595 7 6 -0.2364 2.8979 -0.1080 8 6 -1.4134 3.6202 -0.1348 9 6 -1.8363 4.2119 -1.3108 10 6 -1.0794 4.0877 -2.4609 11 6 0.1018 3.3713 -2.4379 12 6 0.9268 3.2368 -3.6919 13 6 3.5387 1.4453 0.1576 14 8 4.2467 1.7431 -0.7812 15 7 4.0925 1.1170 1.3417 16 6 3.2928 0.8751 2.4288 17 1 2.2280 0.7504 2.2988 18 6 3.8525 0.7905 3.6978 19 7 5.0579 1.2655 3.9173 20 14 2.8912 0.0017 5.0918 21 1 1.5696 -0.4508 4.5878 22 1 3.6465 -1.1647 5.6158 23 1 2.6937 0.9929 6.1798 24 6 5.5488 1.0185 1.4672 25 6 6.1368 2.4134 1.6900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.0909 2.4316 0.8097 32 1 -2.0064 3.7189 0.7625 33 1 -2.7593 4.7722 -1.3309 34 1 -1.4119 4.5504 -3.3784 35 1 0.6121 2.3489 -4.2403 36 1 0.7852 4.1189 -4.3165 37 1 1.9799 3.1453 -3.4259 38 1 5.4485 1.2067 4.8032 39 1 5.7980 0.3796 2.3143 40 1 5.9639 0.5907 0.5548 41 1 5.8854 3.0531 0.8441 42 1 5.7235 2.8402 2.6038 43 1 7.2206 2.3404 1.7809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267515013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -38.589638 kcal Electronic energy + Delta-G solvation = -24453.968057 eV Core-core repulsion = 21079.138725 eV Total energy + Delta-G solvation = -3374.829333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32128 -38.65791 -36.98805 -34.98646 -33.50816 -32.22743 -31.57687 -30.08031 -29.71110 -26.97887 -26.31050 -24.87190 -22.84138 -22.27393 -21.27735 -20.59709 -19.14115 -17.93592 -17.31787 -15.95525 -15.52373 -15.35692 -15.24065 -14.54720 -14.33235 -14.08433 -13.70377 -13.50113 -13.15791 -13.11495 -12.89032 -12.45630 -12.32424 -12.06617 -11.93827 -11.82927 -11.64816 -11.36801 -11.22470 -11.20029 -11.10288 -10.99841 -10.74138 -10.61580 -10.37496 -10.24178 -9.98304 -9.77189 -8.98165 -8.60737 -8.37827 -7.84993 -7.72726 -6.44736 -4.01149 1.51799 1.68450 3.00757 3.13334 3.15542 3.45685 3.75535 3.96351 4.00283 4.78431 4.92839 4.98795 5.05307 5.18878 5.34946 5.42333 5.44550 5.49346 5.63301 5.76730 5.82498 5.89864 5.93709 6.05345 6.08914 6.10809 6.29399 6.40766 6.45092 6.54303 6.56137 6.65362 6.70177 6.73387 6.74440 6.84447 7.00784 7.04796 7.21733 7.38898 7.68237 7.74009 7.84259 8.34384 8.95771 9.42351 9.82547 10.51408 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005444 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.246840 B = 5141.746198 C = 5948.048322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.081 3.919 4 H 0.094 0.906 5 O -0.282 6.282 6 C 0.144 3.856 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.167 4.167 10 C -0.087 4.087 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.456 3.544 14 O -0.589 6.589 15 N -0.434 5.434 16 C -0.342 4.342 17 H 0.101 0.899 18 C 0.037 3.963 19 N -0.856 5.856 20 Si 0.918 3.082 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.281 1.281 24 C 0.137 3.863 25 C -0.141 4.141 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.269 0.731 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.084 0.916 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 1.042 -4.887 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.022 3.978 4 H 0.112 0.888 5 O -0.193 6.193 6 C 0.097 3.903 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.185 4.185 10 C -0.105 4.105 11 C -0.126 4.126 12 C -0.161 4.161 13 C 0.242 3.758 14 O -0.474 6.474 15 N -0.153 5.153 16 C -0.469 4.469 17 H 0.118 0.882 18 C -0.168 4.168 19 N -0.494 5.494 20 Si 0.744 3.256 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.207 1.207 24 C 0.015 3.985 25 C -0.199 4.199 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.751 1.153 -5.316 11.165 hybrid contribution -0.554 -0.339 1.215 1.378 sum -10.305 0.814 -4.100 11.121 Atomic orbital electron populations 1.21948 0.95678 1.01597 1.01794 1.21986 0.95947 0.95476 1.04364 1.22252 0.95910 0.94087 0.85555 0.88818 1.86185 1.35353 1.62662 1.35133 1.18980 0.86106 0.91645 0.93540 1.21464 0.97599 1.05220 0.98492 1.20869 0.95588 0.96117 0.97866 1.20918 1.00901 1.03472 0.93244 1.20794 0.93474 0.98012 0.98225 1.19251 0.97266 1.01836 0.94211 1.20597 1.00434 1.01247 0.93868 1.19552 0.88112 0.83609 0.84480 1.90559 1.62776 1.53298 1.40775 1.43721 1.06190 1.58114 1.07312 1.19774 0.92457 1.49441 0.85215 0.88172 1.25232 0.96552 0.96520 0.98460 1.70120 1.15711 1.40871 1.22663 0.86010 0.79699 0.79128 0.80749 1.19201 1.20395 1.20660 1.21287 0.79234 0.98397 0.99623 1.21968 0.98105 0.97927 1.01933 0.92514 0.92637 0.92670 0.91175 0.88389 0.84720 0.86213 0.86476 0.85954 0.91771 0.92195 0.90560 0.92038 0.87991 0.94880 0.95287 0.89771 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.44 37.16 0.31 -1.95 16 2 C -0.14 -2.49 5.25 -26.73 -0.14 -2.63 16 3 C 0.08 1.67 1.72 -27.88 -0.05 1.62 16 4 H 0.09 1.88 4.53 -51.93 -0.24 1.65 16 5 O -0.28 -5.77 8.30 -39.07 -0.32 -6.10 16 6 C 0.14 2.54 5.35 -39.22 -0.21 2.33 16 7 C -0.21 -3.32 7.10 -39.43 -0.28 -3.60 16 8 C -0.09 -1.16 10.04 -39.61 -0.40 -1.56 16 9 C -0.17 -2.09 10.04 -39.56 -0.40 -2.49 16 10 C -0.09 -1.14 9.70 -39.61 -0.38 -1.52 16 11 C -0.12 -1.95 5.89 -104.47 -0.62 -2.56 16 12 C -0.10 -1.49 9.79 36.01 0.35 -1.14 16 13 C 0.46 11.26 6.90 -10.99 -0.08 11.19 16 14 O -0.59 -16.31 16.00 -14.10 -0.23 -16.53 16 15 N -0.43 -10.74 2.64 -114.81 -0.30 -11.04 16 16 C -0.34 -8.14 8.34 -14.93 -0.12 -8.26 16 17 H 0.10 2.22 5.20 -52.49 -0.27 1.94 16 18 C 0.04 0.88 5.05 -17.47 -0.09 0.79 16 19 N -0.86 -20.83 8.32 55.50 0.46 -20.36 16 20 Si 0.92 18.29 29.59 -169.99 -5.03 13.26 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.14 3.34 5.19 -4.04 -0.02 3.32 16 25 C -0.14 -3.32 9.65 37.16 0.36 -2.97 16 26 H 0.06 0.80 6.81 -51.93 -0.35 0.44 16 27 H 0.05 0.84 6.19 -51.93 -0.32 0.52 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.80 6.26 -51.93 -0.33 1.47 16 31 H 0.14 2.14 4.46 -52.48 -0.23 1.90 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 37 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 38 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 39 H 0.10 2.53 5.79 -51.93 -0.30 2.23 16 40 H 0.03 0.80 7.72 -51.93 -0.40 0.40 16 41 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.08 2.11 6.36 -51.93 -0.33 1.78 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 336.47 15.07 5.07 5.07 Total: -1.00 -28.22 336.47 -8.20 -36.41 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.09 Total: 8.72 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.76 Total: -9.43 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.16 Total: -31.41 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.55 Total: -22.63 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.22 -8.20 -36.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267515013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.179 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds