Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47440 * 2 1 4 4 H 1.08997 * 109.46909 * 53.62906 * 3 2 1 5 5 O 1.42896 * 109.46929 * 293.63128 * 3 2 1 6 6 C 1.35900 * 116.99995 * 93.60746 * 5 3 2 7 7 C 1.38754 * 120.05942 * 2.11407 * 6 5 3 8 8 C 1.38118 * 119.94585 * 179.70180 * 7 6 5 9 9 C 1.38281 * 120.05879 * 0.59193 * 8 7 6 10 10 C 1.38244 * 120.10950 * 359.68458 * 9 8 7 11 11 C 1.38167 * 120.05402 * 0.02562 * 10 9 8 12 12 C 1.50702 * 120.02773 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46951 * 173.63032 * 3 2 1 14 14 O 1.21299 * 119.99640 * 108.52665 * 13 3 2 15 15 N 1.34772 * 120.00268 * 288.51782 * 13 3 2 16 16 C 1.37107 * 119.99761 * 355.26712 * 15 13 3 17 17 H 1.07996 * 120.00029 * 12.33081 * 16 15 13 18 18 C 1.38953 * 119.99586 * 192.33506 * 16 15 13 19 19 N 1.31408 * 120.00080 * 17.23742 * 18 16 15 20 20 Si 1.86797 * 119.99617 * 197.22999 * 18 16 15 21 21 H 1.48499 * 109.47554 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46724 * 120.00353 * 20 18 16 23 23 H 1.48501 * 109.47250 * 240.00249 * 20 18 16 24 24 C 1.46502 * 120.00365 * 175.25979 * 15 13 3 25 25 C 1.53005 * 109.46667 * 82.76516 * 24 15 13 26 26 H 1.09001 * 109.46762 * 300.00053 * 1 2 3 27 27 H 1.08995 * 109.47526 * 59.99729 * 1 2 3 28 28 H 1.09002 * 109.47523 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46762 * 239.99947 * 2 1 3 30 30 H 1.09000 * 109.47275 * 120.00685 * 2 1 3 31 31 H 1.08010 * 120.02475 * 359.97425 * 7 6 5 32 32 H 1.08001 * 119.97182 * 180.29569 * 8 7 6 33 33 H 1.07996 * 119.94919 * 179.70296 * 9 8 7 34 34 H 1.08004 * 119.97572 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47071 * 269.97524 * 12 11 10 36 36 H 1.09008 * 109.47527 * 29.97384 * 12 11 10 37 37 H 1.08995 * 109.47433 * 149.97203 * 12 11 10 38 38 H 0.96999 * 120.00048 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.47227 * 202.76390 * 24 15 13 40 40 H 1.08991 * 109.47063 * 322.76942 * 24 15 13 41 41 H 1.08998 * 109.47180 * 300.14377 * 25 24 15 42 42 H 1.08992 * 109.46985 * 60.14223 * 25 24 15 43 43 H 1.09002 * 109.46793 * 180.14382 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8275 5 8 1.6897 2.0715 -1.2343 6 6 0.5281 2.7766 -1.2595 7 6 -0.2364 2.8979 -0.1080 8 6 -1.4134 3.6202 -0.1348 9 6 -1.8363 4.2119 -1.3108 10 6 -1.0794 4.0877 -2.4609 11 6 0.1018 3.3713 -2.4379 12 6 0.9268 3.2368 -3.6919 13 6 3.5387 1.4453 0.1576 14 8 4.2467 1.7431 -0.7812 15 7 4.0925 1.1170 1.3417 16 6 3.2928 0.8751 2.4288 17 1 2.2280 0.7504 2.2988 18 6 3.8525 0.7905 3.6978 19 7 5.0579 1.2655 3.9173 20 14 2.8912 0.0017 5.0918 21 1 1.5696 -0.4508 4.5878 22 1 3.6465 -1.1647 5.6158 23 1 2.6937 0.9929 6.1798 24 6 5.5488 1.0185 1.4672 25 6 6.1368 2.4134 1.6900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.0909 2.4316 0.8097 32 1 -2.0064 3.7189 0.7625 33 1 -2.7593 4.7722 -1.3309 34 1 -1.4119 4.5504 -3.3784 35 1 0.6121 2.3489 -4.2403 36 1 0.7852 4.1189 -4.3165 37 1 1.9799 3.1453 -3.4259 38 1 5.4485 1.2067 4.8032 39 1 5.7980 0.3796 2.3143 40 1 5.9639 0.5907 0.5548 41 1 5.8854 3.0531 0.8441 42 1 5.7235 2.8402 2.6038 43 1 7.2206 2.3404 1.7809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267515013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = -51.808981 kcal Electronic energy + Delta-G solvation = -24454.541291 eV Core-core repulsion = 21079.138725 eV Total energy + Delta-G solvation = -3375.402567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72169 -40.31940 -38.36774 -36.92589 -34.87800 -33.51906 -33.34204 -31.79108 -31.00957 -28.40796 -27.51574 -26.73608 -24.21099 -23.94432 -22.42122 -22.09023 -20.93658 -19.37728 -18.96702 -17.70448 -16.85853 -16.78494 -16.48528 -16.13841 -16.06689 -15.49374 -15.32035 -14.84118 -14.71080 -14.48372 -14.33607 -13.98963 -13.71703 -13.54741 -13.32262 -13.16626 -12.99861 -12.89286 -12.86178 -12.76880 -12.62816 -12.34684 -12.25002 -12.02720 -11.98413 -11.73693 -11.66646 -11.34324 -10.89627 -10.26937 -9.77994 -9.68372 -8.95602 -8.27471 -5.90873 0.43302 0.56101 1.39800 1.50936 1.62313 1.87125 2.01825 2.34656 2.86286 3.08032 3.13005 3.75352 3.90956 3.93796 3.96810 4.08962 4.28113 4.28166 4.45393 4.45886 4.54375 4.61399 4.71219 4.77585 4.80334 4.81179 4.84259 4.90383 5.01272 5.01805 5.06522 5.09545 5.27606 5.34880 5.39780 5.42098 5.50967 5.60025 5.64768 5.75278 5.79212 5.97053 6.41743 6.56054 7.08598 7.52114 7.92925 8.69886 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005444 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.246840 B = 5141.746198 C = 5948.048322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.093 3.907 4 H 0.096 0.904 5 O -0.308 6.308 6 C 0.106 3.894 7 C -0.219 4.219 8 C -0.088 4.088 9 C -0.156 4.156 10 C -0.084 4.084 11 C -0.142 4.142 12 C -0.101 4.101 13 C 0.435 3.565 14 O -0.632 6.632 15 N -0.439 5.439 16 C -0.361 4.361 17 H 0.115 0.885 18 C -0.001 4.001 19 N -0.878 5.878 20 Si 0.987 3.013 21 H -0.254 1.254 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.136 3.864 25 C -0.126 4.126 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.273 0.727 39 H 0.099 0.901 40 H 0.024 0.976 41 H 0.009 0.991 42 H 0.070 0.930 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 1.327 -4.199 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.034 3.966 4 H 0.113 0.887 5 O -0.222 6.222 6 C 0.061 3.939 7 C -0.238 4.238 8 C -0.106 4.106 9 C -0.174 4.174 10 C -0.101 4.101 11 C -0.143 4.143 12 C -0.158 4.158 13 C 0.224 3.776 14 O -0.521 6.521 15 N -0.157 5.157 16 C -0.487 4.487 17 H 0.133 0.867 18 C -0.204 4.204 19 N -0.516 5.516 20 Si 0.810 3.190 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.208 1.208 24 C 0.013 3.987 25 C -0.184 4.184 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.029 0.971 42 H 0.089 0.911 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.935 1.439 -4.621 13.811 hybrid contribution 0.432 -0.335 0.986 1.127 sum -12.503 1.105 -3.635 13.068 Atomic orbital electron populations 1.21861 0.92911 1.03060 1.02020 1.21919 0.98237 0.93424 1.03438 1.22029 0.92670 0.95772 0.86107 0.88659 1.86132 1.37428 1.63829 1.34766 1.19355 0.85974 0.93300 0.95317 1.21512 0.98558 1.06116 0.97600 1.21236 0.94724 0.95113 0.99534 1.21385 1.01611 1.02130 0.92304 1.21191 0.92187 0.96813 0.99953 1.19588 0.98528 1.02298 0.93875 1.20569 0.98129 1.02931 0.94147 1.20376 0.90149 0.83136 0.83925 1.90506 1.64274 1.55284 1.42030 1.43954 1.06379 1.57461 1.07866 1.20184 0.93201 1.50156 0.85201 0.86738 1.26094 0.97510 0.96287 1.00468 1.70201 1.16991 1.41000 1.23446 0.84959 0.78912 0.77796 0.77302 1.17693 1.20446 1.20771 1.21273 0.79832 0.98688 0.98918 1.21801 0.99483 0.96924 1.00170 0.91562 0.93100 0.90480 0.92254 0.89014 0.85415 0.83539 0.82855 0.82738 0.90971 0.89509 0.94098 0.91718 0.88280 0.95713 0.97149 0.91136 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.44 71.98 0.61 -3.41 16 2 C -0.13 -4.77 5.25 30.59 0.16 -4.61 16 3 C 0.09 3.97 1.72 29.85 0.05 4.02 16 4 H 0.10 3.94 4.53 -2.39 -0.01 3.93 16 5 O -0.31 -13.23 8.30 -73.64 -0.61 -13.85 16 6 C 0.11 3.75 5.35 22.51 0.12 3.88 16 7 C -0.22 -6.76 7.10 22.36 0.16 -6.60 16 8 C -0.09 -2.11 10.04 22.25 0.22 -1.89 16 9 C -0.16 -3.27 10.04 22.28 0.22 -3.05 16 10 C -0.08 -1.93 9.70 22.25 0.22 -1.71 16 11 C -0.14 -4.31 5.89 -19.77 -0.12 -4.43 16 12 C -0.10 -2.87 9.79 71.24 0.70 -2.17 16 13 C 0.44 22.56 6.90 87.66 0.61 23.17 16 14 O -0.63 -37.13 16.00 15.69 0.25 -36.88 16 15 N -0.44 -22.43 2.64 -635.54 -1.68 -24.11 16 16 C -0.36 -17.31 8.34 84.04 0.70 -16.61 16 17 H 0.12 5.04 5.20 -2.91 -0.02 5.02 16 18 C 0.00 -0.03 5.05 84.93 0.43 0.40 16 19 N -0.88 -42.86 8.32 21.66 0.18 -42.68 16 20 Si 0.99 36.59 29.59 68.60 2.03 38.62 16 21 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 22 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 24 C 0.14 6.85 5.19 86.38 0.45 7.30 16 25 C -0.13 -6.10 9.65 71.98 0.69 -5.40 16 26 H 0.07 1.74 6.81 -2.39 -0.02 1.73 16 27 H 0.05 1.50 6.19 -2.39 -0.01 1.48 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 3.38 6.26 -2.39 -0.01 3.37 16 31 H 0.13 4.00 4.46 -2.91 -0.01 3.99 16 32 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.91 8.09 -2.38 -0.02 1.89 16 37 H 0.04 1.43 7.53 -2.39 -0.02 1.41 16 38 H 0.27 12.51 8.31 -92.71 -0.77 11.74 16 39 H 0.10 5.04 5.79 -2.39 -0.01 5.03 16 40 H 0.02 1.26 7.72 -2.39 -0.02 1.24 16 41 H 0.01 0.49 7.86 -2.39 -0.02 0.47 16 42 H 0.07 3.61 6.36 -2.39 -0.02 3.60 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -63.47 336.47 6.40 -57.06 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 1.01 Total: 32.94 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.22 Total: -11.11 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.50 Total: -66.79 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.36 Total: -50.73 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -63.47 6.40 -57.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267515013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.254 kcal (2) G-P(sol) polarization free energy of solvation -63.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds