Wall clock time and date at job start Tue Mar 31 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47103 * 2 1 4 4 H 1.08995 * 109.47628 * 54.34179 * 3 2 1 5 5 O 1.42900 * 109.47069 * 294.34117 * 3 2 1 6 6 C 1.35900 * 117.00375 * 94.57154 * 5 3 2 7 7 C 1.38756 * 120.05350 * 3.20314 * 6 5 3 8 8 C 1.38117 * 119.94682 * 180.02562 * 7 6 5 9 9 C 1.38291 * 120.05611 * 359.96985 * 8 7 6 10 10 C 1.38245 * 120.10942 * 0.04997 * 9 8 7 11 11 C 1.50705 * 119.97443 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05608 * 359.67601 * 10 9 8 13 13 C 1.50701 * 109.47148 * 174.34267 * 3 2 1 14 14 O 1.21291 * 120.00097 * 112.03585 * 13 3 2 15 15 N 1.34781 * 119.99774 * 292.03774 * 13 3 2 16 16 C 1.37089 * 120.00166 * 356.19865 * 15 13 3 17 17 H 1.08009 * 119.99956 * 14.96261 * 16 15 13 18 18 C 1.38950 * 120.00137 * 194.67858 * 16 15 13 19 19 N 1.31404 * 119.99919 * 359.71493 * 18 16 15 20 20 Si 1.86805 * 119.99986 * 179.71159 * 18 16 15 21 21 H 1.48498 * 109.47031 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47040 * 120.00336 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00087 * 20 18 16 24 24 C 1.46496 * 119.99671 * 176.20100 * 15 13 3 25 25 C 1.52999 * 109.47252 * 91.49861 * 24 15 13 26 26 H 1.09005 * 109.47000 * 60.00237 * 1 2 3 27 27 H 1.08998 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46800 * 300.00226 * 1 2 3 29 29 H 1.09001 * 109.46800 * 239.99774 * 2 1 3 30 30 H 1.08997 * 109.46668 * 119.99816 * 2 1 3 31 31 H 1.08008 * 120.02400 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.97282 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.94699 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46735 * 90.00028 * 11 10 9 35 35 H 1.08993 * 109.47209 * 210.00422 * 11 10 9 36 36 H 1.08994 * 109.46648 * 330.00295 * 11 10 9 37 37 H 1.07999 * 120.03231 * 180.29493 * 12 10 9 38 38 H 0.97001 * 120.00111 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.47130 * 211.49532 * 24 15 13 40 40 H 1.08997 * 109.47464 * 331.49706 * 24 15 13 41 41 H 1.08998 * 109.47178 * 60.00096 * 25 24 15 42 42 H 1.09004 * 109.47278 * 179.97438 * 25 24 15 43 43 H 1.09000 * 109.47084 * 299.99604 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 0.8349 5 8 1.6752 2.0766 -1.2275 6 6 0.5237 2.7984 -1.2308 7 6 -0.2050 2.9495 -0.0597 8 6 -1.3752 3.6831 -0.0656 9 6 -1.8205 4.2673 -1.2373 10 6 -1.0965 4.1179 -2.4055 11 6 -1.5849 4.7553 -3.6808 12 6 0.0777 3.3897 -2.4036 13 6 3.5405 1.4447 0.1401 14 8 4.2354 1.8076 -0.7854 15 7 4.1102 1.0436 1.2938 16 6 3.3245 0.7078 2.3658 17 1 2.2684 0.5293 2.2265 18 6 3.8878 0.5913 3.6307 19 7 5.1747 0.7975 3.7983 20 14 2.8156 0.1417 5.0928 21 1 1.4123 -0.0371 4.6412 22 1 3.3062 -1.1237 5.6958 23 1 2.8763 1.2278 6.1037 24 6 5.5691 0.9665 1.4022 25 6 6.1122 2.2951 1.9320 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.1427 2.4938 0.8558 32 1 -1.9430 3.8006 0.8455 33 1 -2.7356 4.8408 -1.2399 34 1 -1.1701 5.7596 -3.7669 35 1 -1.2646 4.1556 -4.5326 36 1 -2.6733 4.8119 -3.6649 37 1 0.6455 3.2773 -3.3153 38 1 5.5680 0.7159 4.6812 39 1 5.8406 0.1637 2.0878 40 1 5.9964 0.7652 0.4198 41 1 5.6850 2.4963 2.9144 42 1 7.1976 2.2375 2.0131 43 1 5.8408 3.0978 1.2464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267617229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:25 Heat of formation + Delta-G solvation = -33.505882 kcal Electronic energy + Delta-G solvation = -24190.381242 eV Core-core repulsion = 20815.772357 eV Total energy + Delta-G solvation = -3374.608885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26977 -38.68706 -37.17677 -35.05517 -33.33251 -32.38398 -31.51210 -30.01623 -29.76383 -26.89398 -26.67204 -24.87370 -22.37135 -22.14939 -22.09219 -20.25861 -19.13755 -17.85468 -17.40300 -15.97871 -15.63964 -15.43663 -15.19705 -14.42973 -14.35305 -14.07440 -13.73855 -13.61138 -13.25499 -13.16452 -12.97168 -12.57896 -12.50988 -12.18274 -11.84472 -11.79301 -11.60108 -11.43581 -11.37291 -11.22281 -11.09537 -10.97043 -10.70889 -10.61261 -10.29304 -10.07560 -9.99853 -9.89372 -8.90101 -8.62379 -8.38141 -7.80306 -7.79140 -6.34152 -4.04039 1.49327 1.67708 3.01430 3.12057 3.14668 3.45080 3.75513 3.94343 3.99353 4.78366 4.92413 4.94571 5.03781 5.16042 5.29135 5.36482 5.42532 5.51876 5.56883 5.58217 5.66572 5.77697 5.86441 5.94481 6.08982 6.10253 6.23227 6.30228 6.40171 6.58011 6.61030 6.62411 6.68436 6.73140 6.80432 6.92843 6.99859 7.07542 7.21753 7.45252 7.73166 7.84668 7.85571 8.38122 8.96231 9.43126 9.82811 10.53219 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.004918 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.212180 B = 5692.559319 C = 6393.156003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.082 3.918 4 H 0.095 0.905 5 O -0.285 6.285 6 C 0.150 3.850 7 C -0.218 4.218 8 C -0.076 4.076 9 C -0.172 4.172 10 C -0.052 4.052 11 C -0.112 4.112 12 C -0.161 4.161 13 C 0.455 3.545 14 O -0.590 6.590 15 N -0.436 5.436 16 C -0.337 4.337 17 H 0.103 0.897 18 C 0.033 3.967 19 N -0.861 5.861 20 Si 0.924 3.076 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.138 3.862 25 C -0.139 4.139 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.267 0.733 39 H 0.107 0.893 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.032 0.968 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 2.372 -4.487 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.022 3.978 4 H 0.113 0.887 5 O -0.197 6.197 6 C 0.103 3.897 7 C -0.237 4.237 8 C -0.094 4.094 9 C -0.190 4.190 10 C -0.052 4.052 11 C -0.168 4.168 12 C -0.180 4.180 13 C 0.242 3.758 14 O -0.475 6.475 15 N -0.156 5.156 16 C -0.464 4.464 17 H 0.120 0.880 18 C -0.170 4.170 19 N -0.501 5.501 20 Si 0.750 3.250 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.016 3.984 25 C -0.197 4.197 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -11.068 2.485 -4.912 12.362 hybrid contribution -0.486 -0.236 1.192 1.309 sum -11.554 2.249 -3.720 12.345 Atomic orbital electron populations 1.21918 0.95682 1.01599 1.01762 1.22065 0.95964 0.95456 1.04631 1.22251 0.95739 0.94032 0.85735 0.88737 1.86198 1.36327 1.61815 1.35319 1.19132 0.85966 0.90704 0.93854 1.21437 0.98202 1.05755 0.98285 1.20868 0.95206 0.95498 0.97835 1.20814 1.01354 1.04164 0.92656 1.19622 0.93763 0.96326 0.95512 1.20771 1.01052 1.00534 0.94486 1.20258 0.97982 1.02721 0.97053 1.19595 0.88098 0.83575 0.84541 1.90561 1.63673 1.52463 1.40801 1.43742 1.06299 1.55819 1.09723 1.19894 0.93507 1.46969 0.86037 0.87975 1.25306 0.96300 0.96614 0.98814 1.70196 1.10128 1.46587 1.23186 0.85901 0.79747 0.78306 0.81012 1.19289 1.20512 1.20510 1.21357 0.78982 1.00146 0.97940 1.22139 0.98237 0.96586 1.02694 0.92722 0.92634 0.92546 0.91202 0.87948 0.84783 0.86116 0.86479 0.91139 0.91505 0.91611 0.85480 0.92184 0.87562 0.94874 0.89167 0.94940 0.96306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.48 37.16 0.32 -1.96 16 2 C -0.14 -2.58 5.22 -26.73 -0.14 -2.72 16 3 C 0.08 1.69 1.73 -27.89 -0.05 1.64 16 4 H 0.10 1.89 4.73 -51.93 -0.25 1.65 16 5 O -0.28 -5.96 9.21 -39.21 -0.36 -6.32 16 6 C 0.15 2.66 5.33 -39.22 -0.21 2.45 16 7 C -0.22 -3.46 7.24 -39.43 -0.29 -3.75 16 8 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 9 C -0.17 -2.15 9.70 -39.56 -0.38 -2.54 16 10 C -0.05 -0.68 5.88 -104.64 -0.62 -1.30 16 11 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 12 C -0.16 -2.53 9.64 -39.43 -0.38 -2.91 16 13 C 0.46 11.39 7.01 -10.98 -0.08 11.32 16 14 O -0.59 -16.64 16.11 -14.23 -0.23 -16.87 16 15 N -0.44 -10.88 2.62 -114.81 -0.30 -11.18 16 16 C -0.34 -8.00 8.35 -14.94 -0.12 -8.13 16 17 H 0.10 2.24 4.86 -52.48 -0.26 1.99 16 18 C 0.03 0.78 5.37 -17.47 -0.09 0.69 16 19 N -0.86 -20.84 7.26 55.50 0.40 -20.44 16 20 Si 0.92 18.31 29.55 -169.99 -5.02 13.29 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 C 0.14 3.41 5.35 -4.04 -0.02 3.39 16 25 C -0.14 -3.29 9.55 37.16 0.35 -2.93 16 26 H 0.05 0.83 6.31 -51.93 -0.33 0.51 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.79 6.93 -51.93 -0.36 0.43 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.90 5.71 -51.93 -0.30 1.60 16 31 H 0.13 2.12 4.63 -52.48 -0.24 1.88 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 39 H 0.11 2.68 6.00 -51.93 -0.31 2.37 16 40 H 0.03 0.83 7.43 -51.93 -0.39 0.44 16 41 H 0.09 2.26 5.91 -51.93 -0.31 1.95 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -28.52 336.86 -8.27 -36.79 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.09 Total: 8.53 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.75 Total: -8.88 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.10 Total: -31.62 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.59 Total: -23.19 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.52 -8.27 -36.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267617229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.281 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds