Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47103 * 2 1 4 4 H 1.08995 * 109.47628 * 54.34179 * 3 2 1 5 5 O 1.42900 * 109.47069 * 294.34117 * 3 2 1 6 6 C 1.35900 * 117.00375 * 94.57154 * 5 3 2 7 7 C 1.38756 * 120.05350 * 3.20314 * 6 5 3 8 8 C 1.38117 * 119.94682 * 180.02562 * 7 6 5 9 9 C 1.38291 * 120.05611 * 359.96985 * 8 7 6 10 10 C 1.38245 * 120.10942 * 0.04997 * 9 8 7 11 11 C 1.50705 * 119.97443 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.05608 * 359.67601 * 10 9 8 13 13 C 1.50701 * 109.47148 * 174.34267 * 3 2 1 14 14 O 1.21291 * 120.00097 * 112.03585 * 13 3 2 15 15 N 1.34781 * 119.99774 * 292.03774 * 13 3 2 16 16 C 1.37089 * 120.00166 * 356.19865 * 15 13 3 17 17 H 1.08009 * 119.99956 * 14.96261 * 16 15 13 18 18 C 1.38950 * 120.00137 * 194.67858 * 16 15 13 19 19 N 1.31404 * 119.99919 * 359.71493 * 18 16 15 20 20 Si 1.86805 * 119.99986 * 179.71159 * 18 16 15 21 21 H 1.48498 * 109.47031 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47040 * 120.00336 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00087 * 20 18 16 24 24 C 1.46496 * 119.99671 * 176.20100 * 15 13 3 25 25 C 1.52999 * 109.47252 * 91.49861 * 24 15 13 26 26 H 1.09005 * 109.47000 * 60.00237 * 1 2 3 27 27 H 1.08998 * 109.47360 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46800 * 300.00226 * 1 2 3 29 29 H 1.09001 * 109.46800 * 239.99774 * 2 1 3 30 30 H 1.08997 * 109.46668 * 119.99816 * 2 1 3 31 31 H 1.08008 * 120.02400 * 0.02562 * 7 6 5 32 32 H 1.07997 * 119.97282 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.94699 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46735 * 90.00028 * 11 10 9 35 35 H 1.08993 * 109.47209 * 210.00422 * 11 10 9 36 36 H 1.08994 * 109.46648 * 330.00295 * 11 10 9 37 37 H 1.07999 * 120.03231 * 180.29493 * 12 10 9 38 38 H 0.97001 * 120.00111 * 180.02562 * 19 18 16 39 39 H 1.09006 * 109.47130 * 211.49532 * 24 15 13 40 40 H 1.08997 * 109.47464 * 331.49706 * 24 15 13 41 41 H 1.08998 * 109.47178 * 60.00096 * 25 24 15 42 42 H 1.09004 * 109.47278 * 179.97438 * 25 24 15 43 43 H 1.09000 * 109.47084 * 299.99604 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5964 1.9847 0.8349 5 8 1.6752 2.0766 -1.2275 6 6 0.5237 2.7984 -1.2308 7 6 -0.2050 2.9495 -0.0597 8 6 -1.3752 3.6831 -0.0656 9 6 -1.8205 4.2673 -1.2373 10 6 -1.0965 4.1179 -2.4055 11 6 -1.5849 4.7553 -3.6808 12 6 0.0777 3.3897 -2.4036 13 6 3.5405 1.4447 0.1401 14 8 4.2354 1.8076 -0.7854 15 7 4.1102 1.0436 1.2938 16 6 3.3245 0.7078 2.3658 17 1 2.2684 0.5293 2.2265 18 6 3.8878 0.5913 3.6307 19 7 5.1747 0.7975 3.7983 20 14 2.8156 0.1417 5.0928 21 1 1.4123 -0.0371 4.6412 22 1 3.3062 -1.1237 5.6958 23 1 2.8763 1.2278 6.1037 24 6 5.5691 0.9665 1.4022 25 6 6.1122 2.2951 1.9320 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.1427 2.4938 0.8558 32 1 -1.9430 3.8006 0.8455 33 1 -2.7356 4.8408 -1.2399 34 1 -1.1701 5.7596 -3.7669 35 1 -1.2646 4.1556 -4.5326 36 1 -2.6733 4.8119 -3.6649 37 1 0.6455 3.2773 -3.3153 38 1 5.5680 0.7159 4.6812 39 1 5.8406 0.1637 2.0878 40 1 5.9964 0.7652 0.4198 41 1 5.6850 2.4963 2.9144 42 1 7.1976 2.2375 2.0131 43 1 5.8408 3.0978 1.2464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267617229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -46.948805 kcal Electronic energy + Delta-G solvation = -24190.964171 eV Core-core repulsion = 20815.772357 eV Total energy + Delta-G solvation = -3375.191814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.70267 -40.32489 -38.56782 -37.01183 -34.79036 -33.40579 -33.38391 -31.73303 -31.10275 -28.24830 -27.80083 -26.74097 -24.03148 -23.46290 -23.36979 -21.76427 -20.87456 -19.24321 -19.13982 -17.68733 -16.86859 -16.84104 -16.65600 -16.12882 -16.00701 -15.46248 -15.24563 -14.87359 -14.71676 -14.48134 -14.40872 -14.10831 -13.74301 -13.60599 -13.37309 -13.08787 -12.90368 -12.83091 -12.81671 -12.76440 -12.56159 -12.42996 -12.29962 -12.00370 -11.90661 -11.79225 -11.61246 -11.35968 -10.83763 -10.28402 -9.74587 -9.70293 -9.03269 -8.17080 -5.93831 0.40131 0.54077 1.41884 1.51113 1.62758 1.88759 1.97114 2.34327 2.83075 3.09570 3.12871 3.74239 3.89149 3.93717 3.98729 4.06831 4.22091 4.33886 4.43814 4.46641 4.50724 4.61140 4.63952 4.80871 4.83586 4.86973 4.90784 4.96105 5.00754 5.01944 5.10201 5.11346 5.26026 5.28124 5.41215 5.46842 5.48550 5.54864 5.68022 5.80158 5.86796 5.94146 6.43055 6.55547 7.08896 7.51373 7.91918 8.71852 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.004918 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.212180 B = 5692.559319 C = 6393.156003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.094 3.906 4 H 0.100 0.900 5 O -0.315 6.315 6 C 0.115 3.885 7 C -0.229 4.229 8 C -0.074 4.074 9 C -0.164 4.164 10 C -0.050 4.050 11 C -0.111 4.111 12 C -0.180 4.180 13 C 0.433 3.567 14 O -0.636 6.636 15 N -0.440 5.440 16 C -0.357 4.357 17 H 0.119 0.881 18 C -0.005 4.005 19 N -0.882 5.882 20 Si 0.993 3.007 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.137 3.863 25 C -0.124 4.124 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.271 0.729 39 H 0.103 0.897 40 H 0.020 0.980 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.029 2.821 -3.405 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.035 3.965 4 H 0.118 0.882 5 O -0.228 6.228 6 C 0.070 3.930 7 C -0.247 4.247 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.050 4.050 11 C -0.167 4.167 12 C -0.199 4.199 13 C 0.222 3.778 14 O -0.525 6.525 15 N -0.158 5.158 16 C -0.483 4.483 17 H 0.137 0.863 18 C -0.207 4.207 19 N -0.521 5.521 20 Si 0.816 3.184 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.208 1.208 24 C 0.015 3.985 25 C -0.182 4.182 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -14.383 2.931 -3.827 15.169 hybrid contribution 0.554 -0.306 0.836 1.049 sum -13.829 2.625 -2.990 14.390 Atomic orbital electron populations 1.21836 0.92839 1.03105 1.02040 1.21996 0.98320 0.93397 1.03655 1.22041 0.92422 0.95734 0.86278 0.88219 1.86133 1.38463 1.63043 1.35208 1.19464 0.85823 0.92145 0.95550 1.21477 0.99183 1.06753 0.97298 1.21250 0.94232 0.94238 0.99507 1.21277 1.02020 1.03071 0.91788 1.20049 0.92464 0.95067 0.97459 1.20854 1.02520 1.00638 0.92703 1.20476 0.99318 1.03688 0.96409 1.20439 0.90197 0.83207 0.83964 1.90504 1.65220 1.54620 1.42180 1.43979 1.06432 1.55104 1.10268 1.20339 0.94302 1.47699 0.85970 0.86314 1.26172 0.97515 0.95959 1.01035 1.70273 1.11503 1.46370 1.23988 0.84856 0.78841 0.77549 0.77151 1.17603 1.20498 1.20772 1.21329 0.79681 1.00505 0.97001 1.21981 0.99478 0.95366 1.01331 0.93241 0.90417 0.91433 0.92408 0.88532 0.85271 0.83172 0.82932 0.90135 0.91217 0.89227 0.86105 0.91867 0.87936 0.96193 0.90134 0.92844 0.97989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.48 71.98 0.61 -3.40 16 2 C -0.14 -4.94 5.22 30.59 0.16 -4.78 16 3 C 0.09 4.03 1.73 29.85 0.05 4.09 16 4 H 0.10 4.07 4.73 -2.39 -0.01 4.06 16 5 O -0.32 -13.80 9.21 -73.51 -0.68 -14.47 16 6 C 0.12 4.15 5.33 22.51 0.12 4.27 16 7 C -0.23 -7.03 7.24 22.36 0.16 -6.87 16 8 C -0.07 -1.78 10.04 22.25 0.22 -1.55 16 9 C -0.16 -3.51 9.70 22.28 0.22 -3.30 16 10 C -0.05 -1.21 5.88 -19.88 -0.12 -1.32 16 11 C -0.11 -1.81 10.01 71.24 0.71 -1.09 16 12 C -0.18 -5.66 9.64 22.37 0.22 -5.45 16 13 C 0.43 22.70 7.01 87.66 0.61 23.32 16 14 O -0.64 -38.05 16.11 15.85 0.26 -37.80 16 15 N -0.44 -22.64 2.62 -635.54 -1.67 -24.31 16 16 C -0.36 -17.00 8.35 84.04 0.70 -16.29 16 17 H 0.12 5.14 4.86 -2.91 -0.01 5.12 16 18 C -0.01 -0.24 5.37 84.93 0.46 0.22 16 19 N -0.88 -42.62 7.26 21.66 0.16 -42.47 16 20 Si 0.99 36.36 29.55 68.60 2.03 38.39 16 21 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 22 H -0.28 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 24 C 0.14 7.04 5.35 86.38 0.46 7.50 16 25 C -0.12 -6.02 9.55 71.98 0.69 -5.33 16 26 H 0.05 1.47 6.31 -2.38 -0.02 1.45 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 1.76 6.93 -2.39 -0.02 1.75 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.10 3.58 5.71 -2.39 -0.01 3.57 16 31 H 0.13 4.00 4.63 -2.91 -0.01 3.99 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 36 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 37 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.27 12.33 8.31 -92.71 -0.77 11.56 16 39 H 0.10 5.31 6.00 -2.38 -0.01 5.30 16 40 H 0.02 1.05 7.43 -2.39 -0.02 1.03 16 41 H 0.08 4.10 5.91 -2.39 -0.01 4.08 16 42 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -64.01 336.86 6.39 -57.62 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 1.01 Total: 33.03 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.28 Total: -9.99 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -1.51 Total: -66.77 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.42 Total: -52.27 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.39 kcal Total: -64.01 6.39 -57.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267617229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.675 kcal (2) G-P(sol) polarization free energy of solvation -64.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds