Wall clock time and date at job start Tue Mar 31 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46894 * 2 1 4 4 H 1.08997 * 109.47482 * 300.05721 * 3 2 1 5 5 O 1.42897 * 109.47011 * 60.05941 * 3 2 1 6 6 C 1.35897 * 117.00248 * 255.78570 * 5 3 2 7 7 C 1.38761 * 120.05050 * 5.67016 * 6 5 3 8 8 C 1.38123 * 119.94143 * 180.02562 * 7 6 5 9 9 C 1.38285 * 120.05809 * 0.02562 * 8 7 6 10 10 C 1.38250 * 120.10930 * 359.95595 * 9 8 7 11 11 C 1.50704 * 119.96904 * 179.97438 * 10 9 8 12 12 C 1.38159 * 120.05498 * 0.28049 * 10 9 8 13 13 C 1.50702 * 109.47025 * 180.02562 * 3 2 1 14 14 O 1.21292 * 120.00174 * 253.87170 * 13 3 2 15 15 N 1.34780 * 119.99886 * 73.86725 * 13 3 2 16 16 C 1.37095 * 119.99886 * 185.16900 * 15 13 3 17 17 H 1.07999 * 120.00464 * 318.25021 * 16 15 13 18 18 C 1.38956 * 119.99680 * 138.25205 * 16 15 13 19 19 N 1.31413 * 119.99906 * 161.29644 * 18 16 15 20 20 Si 1.86794 * 119.99999 * 341.29170 * 18 16 15 21 21 H 1.48498 * 109.47377 * 86.17382 * 20 18 16 22 22 H 1.48507 * 109.47046 * 206.17087 * 20 18 16 23 23 H 1.48502 * 109.47272 * 326.16992 * 20 18 16 24 24 C 1.46499 * 120.00061 * 5.16949 * 15 13 3 25 25 C 1.52999 * 109.47182 * 92.15550 * 24 15 13 26 26 H 1.08993 * 109.47545 * 299.99936 * 1 2 3 27 27 H 1.09003 * 109.47229 * 59.99691 * 1 2 3 28 28 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47298 * 240.00344 * 2 1 3 30 30 H 1.08993 * 109.47278 * 120.00267 * 2 1 3 31 31 H 1.08001 * 120.03140 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.96936 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.94619 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.46794 * 90.00771 * 11 10 9 35 35 H 1.08999 * 109.46936 * 210.00251 * 11 10 9 36 36 H 1.08998 * 109.47518 * 330.00844 * 11 10 9 37 37 H 1.08003 * 120.02649 * 179.73877 * 12 10 9 38 38 H 0.96997 * 119.99849 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47176 * 212.15667 * 24 15 13 40 40 H 1.09007 * 109.46901 * 332.15741 * 24 15 13 41 41 H 1.09000 * 109.47402 * 180.02562 * 25 24 15 42 42 H 1.09005 * 109.47185 * 300.00285 * 25 24 15 43 43 H 1.08997 * 109.47093 * 60.00342 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6758 1.9567 -0.8894 5 8 1.5647 2.1157 1.1675 6 6 0.5406 2.9932 0.9998 7 6 -0.0739 3.1157 -0.2382 8 6 -1.1142 4.0086 -0.4062 9 6 -1.5431 4.7805 0.6580 10 6 -0.9327 4.6600 1.8926 11 6 -1.4023 5.5032 3.0501 12 6 0.1115 3.7718 2.0645 13 6 3.5469 1.4426 -0.0006 14 8 4.1538 1.7342 1.0082 15 7 4.2203 1.1184 -1.1222 16 6 5.5871 1.0150 -1.0954 17 1 6.1731 1.7413 -0.5518 18 6 6.2185 -0.0243 -1.7678 19 7 7.4968 0.0628 -2.0600 20 14 5.2504 -1.5453 -2.2560 21 1 4.5966 -1.3156 -3.5694 22 1 6.1707 -2.7064 -2.3575 23 1 4.2142 -1.8234 -1.2292 24 6 3.4918 0.8766 -2.3700 25 6 3.3973 2.1797 -3.1662 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.2615 2.5140 -1.0700 32 1 -1.5925 4.1046 -1.3697 33 1 -2.3564 5.4784 0.5245 34 1 -2.1876 4.9740 3.5900 35 1 -0.5660 5.6960 3.7219 36 1 -1.7931 6.4493 2.6755 37 1 0.5907 3.6811 3.0281 38 1 7.9376 -0.6628 -2.5290 39 1 4.0202 0.1278 -2.9600 40 1 2.4885 0.5171 -2.1411 41 1 2.8549 1.9999 -4.0944 42 1 2.8689 2.9285 -2.5762 43 1 4.4005 2.5391 -3.3951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267617230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:28 Heat of formation + Delta-G solvation = -35.597818 kcal Electronic energy + Delta-G solvation = -24220.885816 eV Core-core repulsion = 20846.186218 eV Total energy + Delta-G solvation = -3374.699598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49504 -38.91749 -37.33497 -35.23073 -33.56063 -32.53015 -32.18750 -30.09399 -29.79897 -27.64106 -27.00114 -24.55670 -23.10007 -22.51188 -22.21127 -20.81808 -18.99184 -18.13116 -16.93701 -16.23773 -16.06366 -15.73374 -15.59429 -15.19084 -14.45517 -14.18047 -13.86667 -13.80614 -13.50647 -13.41188 -13.17132 -12.80922 -12.69507 -12.39969 -12.31392 -12.27108 -12.02945 -11.74748 -11.61178 -11.56809 -11.49320 -11.16832 -10.86889 -10.83481 -10.67901 -10.31710 -10.09754 -9.88091 -9.06522 -8.77740 -8.55487 -7.97625 -7.77429 -6.41668 -4.05290 1.33361 1.51292 2.95235 3.15804 3.19193 3.23483 3.56384 3.79230 4.10054 4.39897 4.76032 4.78825 4.85601 4.90781 5.06002 5.10492 5.21882 5.26106 5.32009 5.36856 5.43637 5.48186 5.54201 5.60923 5.68876 5.74834 5.82617 5.84224 5.88315 5.99358 6.08349 6.15020 6.16347 6.33105 6.35926 6.42949 6.46661 6.58692 6.71441 6.83012 7.48375 7.64005 8.25049 8.46957 8.90744 9.25286 9.68552 10.70202 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.004510 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.607830 B = 6207.011597 C = 6347.531684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.064 3.936 4 H 0.092 0.908 5 O -0.280 6.280 6 C 0.146 3.854 7 C -0.221 4.221 8 C -0.075 4.075 9 C -0.169 4.169 10 C -0.050 4.050 11 C -0.113 4.113 12 C -0.157 4.157 13 C 0.467 3.533 14 O -0.540 6.540 15 N -0.463 5.463 16 C -0.313 4.313 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.865 5.865 20 Si 0.875 3.125 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.071 3.929 25 C -0.162 4.162 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.275 0.725 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 4.410 0.335 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.110 0.890 5 O -0.191 6.191 6 C 0.099 3.901 7 C -0.240 4.240 8 C -0.093 4.093 9 C -0.187 4.187 10 C -0.050 4.050 11 C -0.170 4.170 12 C -0.175 4.175 13 C 0.253 3.747 14 O -0.419 6.419 15 N -0.187 5.187 16 C -0.440 4.440 17 H 0.122 0.878 18 C -0.143 4.143 19 N -0.501 5.501 20 Si 0.702 3.298 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.187 1.187 24 C -0.053 4.053 25 C -0.220 4.220 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.833 4.416 0.965 19.368 hybrid contribution -0.356 -0.971 -0.756 1.281 sum -19.189 3.445 0.209 19.497 Atomic orbital electron populations 1.21842 0.94923 1.01989 1.02125 1.21969 0.96556 0.94757 1.04292 1.22616 0.94906 0.93817 0.88262 0.89017 1.86237 1.46611 1.52725 1.33568 1.19158 0.87671 0.89418 0.93834 1.21326 1.00928 1.04445 0.97289 1.20863 0.95427 0.94442 0.98567 1.20853 1.02364 1.02593 0.92885 1.19665 0.94399 0.95616 0.95287 1.20793 1.01622 0.98607 0.95975 1.20307 1.00017 0.98483 0.98733 1.20100 0.87123 0.83236 0.84198 1.90590 1.69247 1.49537 1.32486 1.43648 1.06763 1.63422 1.04848 1.18995 0.78439 1.11944 1.34644 0.87809 1.25386 0.95378 0.97412 0.96093 1.69713 1.10420 1.32666 1.37287 0.87092 0.80472 0.83410 0.78791 1.19732 1.21290 1.18683 1.22130 0.96375 0.98512 0.88237 1.22098 1.03079 0.97744 0.99081 0.92179 0.92615 0.92217 0.89728 0.90113 0.85181 0.86021 0.86297 0.91076 0.91324 0.91472 0.85251 0.91505 0.90364 0.91853 0.92580 0.93311 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.66 37.16 0.32 -1.59 16 2 C -0.14 -2.21 5.34 -26.73 -0.14 -2.36 16 3 C 0.06 1.18 1.68 -27.88 -0.05 1.14 16 4 H 0.09 1.49 3.87 -51.93 -0.20 1.29 16 5 O -0.28 -5.35 8.93 -38.95 -0.35 -5.70 16 6 C 0.15 2.33 5.68 -39.22 -0.22 2.11 16 7 C -0.22 -3.03 7.85 -39.43 -0.31 -3.34 16 8 C -0.07 -0.87 10.04 -39.61 -0.40 -1.26 16 9 C -0.17 -1.88 9.70 -39.56 -0.38 -2.26 16 10 C -0.05 -0.59 5.88 -104.64 -0.62 -1.21 16 11 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 12 C -0.16 -2.27 9.64 -39.44 -0.38 -2.65 16 13 C 0.47 11.23 6.93 -10.98 -0.08 11.15 16 14 O -0.54 -15.41 16.46 -13.98 -0.23 -15.64 16 15 N -0.46 -11.12 2.11 -114.81 -0.24 -11.36 16 16 C -0.31 -8.83 9.33 -14.93 -0.14 -8.97 16 17 H 0.10 3.32 7.95 -52.49 -0.42 2.90 16 18 C 0.06 1.73 5.35 -17.46 -0.09 1.64 16 19 N -0.86 -24.83 13.96 55.50 0.77 -24.05 16 20 Si 0.87 20.04 25.36 -169.99 -4.31 15.73 16 21 H -0.27 -5.63 6.29 56.52 0.36 -5.27 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.26 -5.93 7.11 56.52 0.40 -5.52 16 24 C 0.07 1.37 4.47 -4.04 -0.02 1.35 16 25 C -0.16 -2.72 10.18 37.16 0.38 -2.34 16 26 H 0.06 0.80 6.97 -51.93 -0.36 0.44 16 27 H 0.05 0.62 6.99 -51.93 -0.36 0.25 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.32 6.12 -51.93 -0.32 1.00 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.13 1.65 4.77 -52.49 -0.25 1.40 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.08 1.60 3.20 -51.93 -0.17 1.44 16 40 H 0.06 1.02 4.50 -51.93 -0.23 0.79 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.77 7.72 -51.93 -0.40 0.37 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -32.68 339.49 -7.12 -39.80 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.11 Total: 5.32 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.76 Total: -9.22 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.53 Total: -35.42 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.58 Total: -21.34 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.31 Total: 15.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.68 -7.12 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267617230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.204 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds