Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46894 * 2 1 4 4 H 1.08997 * 109.47482 * 300.05721 * 3 2 1 5 5 O 1.42897 * 109.47011 * 60.05941 * 3 2 1 6 6 C 1.35897 * 117.00248 * 255.78570 * 5 3 2 7 7 C 1.38761 * 120.05050 * 5.67016 * 6 5 3 8 8 C 1.38123 * 119.94143 * 180.02562 * 7 6 5 9 9 C 1.38285 * 120.05809 * 0.02562 * 8 7 6 10 10 C 1.38250 * 120.10930 * 359.95595 * 9 8 7 11 11 C 1.50704 * 119.96904 * 179.97438 * 10 9 8 12 12 C 1.38159 * 120.05498 * 0.28049 * 10 9 8 13 13 C 1.50702 * 109.47025 * 180.02562 * 3 2 1 14 14 O 1.21292 * 120.00174 * 253.87170 * 13 3 2 15 15 N 1.34780 * 119.99886 * 73.86725 * 13 3 2 16 16 C 1.37095 * 119.99886 * 185.16900 * 15 13 3 17 17 H 1.07999 * 120.00464 * 318.25021 * 16 15 13 18 18 C 1.38956 * 119.99680 * 138.25205 * 16 15 13 19 19 N 1.31413 * 119.99906 * 161.29644 * 18 16 15 20 20 Si 1.86794 * 119.99999 * 341.29170 * 18 16 15 21 21 H 1.48498 * 109.47377 * 86.17382 * 20 18 16 22 22 H 1.48507 * 109.47046 * 206.17087 * 20 18 16 23 23 H 1.48502 * 109.47272 * 326.16992 * 20 18 16 24 24 C 1.46499 * 120.00061 * 5.16949 * 15 13 3 25 25 C 1.52999 * 109.47182 * 92.15550 * 24 15 13 26 26 H 1.08993 * 109.47545 * 299.99936 * 1 2 3 27 27 H 1.09003 * 109.47229 * 59.99691 * 1 2 3 28 28 H 1.09004 * 109.47056 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47298 * 240.00344 * 2 1 3 30 30 H 1.08993 * 109.47278 * 120.00267 * 2 1 3 31 31 H 1.08001 * 120.03140 * 359.97438 * 7 6 5 32 32 H 1.08002 * 119.96936 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.94619 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.46794 * 90.00771 * 11 10 9 35 35 H 1.08999 * 109.46936 * 210.00251 * 11 10 9 36 36 H 1.08998 * 109.47518 * 330.00844 * 11 10 9 37 37 H 1.08003 * 120.02649 * 179.73877 * 12 10 9 38 38 H 0.96997 * 119.99849 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47176 * 212.15667 * 24 15 13 40 40 H 1.09007 * 109.46901 * 332.15741 * 24 15 13 41 41 H 1.09000 * 109.47402 * 180.02562 * 25 24 15 42 42 H 1.09005 * 109.47185 * 300.00285 * 25 24 15 43 43 H 1.08997 * 109.47093 * 60.00342 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6758 1.9567 -0.8894 5 8 1.5647 2.1157 1.1675 6 6 0.5406 2.9932 0.9998 7 6 -0.0739 3.1157 -0.2382 8 6 -1.1142 4.0086 -0.4062 9 6 -1.5431 4.7805 0.6580 10 6 -0.9327 4.6600 1.8926 11 6 -1.4023 5.5032 3.0501 12 6 0.1115 3.7718 2.0645 13 6 3.5469 1.4426 -0.0006 14 8 4.1538 1.7342 1.0082 15 7 4.2203 1.1184 -1.1222 16 6 5.5871 1.0150 -1.0954 17 1 6.1731 1.7413 -0.5518 18 6 6.2185 -0.0243 -1.7678 19 7 7.4968 0.0628 -2.0600 20 14 5.2504 -1.5453 -2.2560 21 1 4.5966 -1.3156 -3.5694 22 1 6.1707 -2.7064 -2.3575 23 1 4.2142 -1.8234 -1.2292 24 6 3.4918 0.8766 -2.3700 25 6 3.3973 2.1797 -3.1662 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.2615 2.5140 -1.0700 32 1 -1.5925 4.1046 -1.3697 33 1 -2.3564 5.4784 0.5245 34 1 -2.1876 4.9740 3.5900 35 1 -0.5660 5.6960 3.7219 36 1 -1.7931 6.4493 2.6755 37 1 0.5907 3.6811 3.0281 38 1 7.9376 -0.6628 -2.5290 39 1 4.0202 0.1278 -2.9600 40 1 2.4885 0.5171 -2.1411 41 1 2.8549 1.9999 -4.0944 42 1 2.8689 2.9285 -2.5762 43 1 4.4005 2.5391 -3.3951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267617230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -55.555136 kcal Electronic energy + Delta-G solvation = -24221.751230 eV Core-core repulsion = 20846.186218 eV Total energy + Delta-G solvation = -3375.565012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83363 -40.41502 -38.59977 -37.14332 -34.95612 -34.09858 -33.40874 -31.43813 -31.12983 -29.11153 -27.85405 -26.40651 -24.61046 -23.49500 -23.35096 -22.19292 -20.56098 -19.38372 -18.90124 -17.80319 -17.72513 -16.87848 -16.85804 -16.55664 -15.93401 -15.50616 -15.36102 -15.06961 -14.78076 -14.59153 -14.37760 -14.27998 -14.14969 -13.91128 -13.69063 -13.37374 -13.08433 -12.99823 -12.87723 -12.74579 -12.68109 -12.49426 -12.42764 -12.14675 -11.96982 -11.86384 -11.57223 -11.44723 -10.99741 -10.38139 -9.76970 -9.72170 -9.09092 -8.53826 -6.24594 0.38470 0.51172 1.14540 1.29404 1.42316 1.73657 1.89345 2.15275 2.75550 2.82564 2.87230 3.54548 3.61802 3.76360 3.93646 3.94694 3.98117 4.13071 4.24816 4.33116 4.36734 4.38895 4.43072 4.47903 4.58755 4.74154 4.84794 4.86702 4.90038 4.91607 4.96645 5.01269 5.06570 5.26536 5.28417 5.33619 5.42363 5.50846 5.52012 5.67152 5.90057 5.98947 6.38579 6.56994 6.86270 7.17976 7.73395 8.63141 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025458 B = 0.004510 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.607830 B = 6207.011597 C = 6347.531684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.079 3.921 4 H 0.120 0.880 5 O -0.313 6.313 6 C 0.111 3.889 7 C -0.226 4.226 8 C -0.071 4.071 9 C -0.163 4.163 10 C -0.051 4.051 11 C -0.113 4.113 12 C -0.182 4.182 13 C 0.453 3.547 14 O -0.606 6.606 15 N -0.467 5.467 16 C -0.335 4.335 17 H 0.037 0.963 18 C 0.016 3.984 19 N -0.911 5.911 20 Si 0.943 3.057 21 H -0.221 1.221 22 H -0.287 1.287 23 H -0.256 1.256 24 C 0.061 3.939 25 C -0.157 4.157 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.282 0.718 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.382 3.892 -2.320 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.020 3.980 4 H 0.138 0.862 5 O -0.226 6.226 6 C 0.066 3.934 7 C -0.244 4.244 8 C -0.088 4.088 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.169 4.169 12 C -0.200 4.200 13 C 0.242 3.758 14 O -0.489 6.489 15 N -0.190 5.190 16 C -0.463 4.463 17 H 0.055 0.945 18 C -0.186 4.186 19 N -0.548 5.548 20 Si 0.765 3.235 21 H -0.146 1.146 22 H -0.213 1.213 23 H -0.180 1.180 24 C -0.060 4.060 25 C -0.215 4.215 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.786 3.921 -1.731 24.169 hybrid contribution 1.196 -0.629 0.158 1.361 sum -22.589 3.292 -1.573 22.882 Atomic orbital electron populations 1.21790 0.91708 1.03606 1.02731 1.22018 0.99238 0.92521 1.03695 1.22448 0.90126 0.95989 0.89486 0.86246 1.86187 1.48365 1.54031 1.34010 1.19481 0.88076 0.90192 0.95679 1.21478 1.01432 1.05245 0.96288 1.21298 0.94319 0.93039 1.00187 1.21314 1.02409 1.02332 0.92083 1.20043 0.93292 0.94839 0.96988 1.20865 1.01885 0.99127 0.95048 1.20490 1.01497 0.99773 0.98289 1.21231 0.89973 0.81435 0.83195 1.90539 1.71343 1.52185 1.34847 1.43762 1.05425 1.62890 1.06894 1.18556 0.80689 1.11891 1.35186 0.94535 1.26219 0.96491 1.00428 0.95480 1.69841 1.12654 1.34003 1.38330 0.86009 0.79110 0.77548 0.80819 1.14585 1.21318 1.17984 1.22466 0.97540 0.99952 0.86086 1.22079 1.02103 0.96418 1.00944 0.93369 0.90210 0.90053 0.88628 0.92419 0.84097 0.82528 0.83010 0.89679 0.91757 0.89416 0.86602 0.90879 0.90913 0.87694 0.87780 0.92655 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.66 71.98 0.62 -2.46 16 2 C -0.14 -4.14 5.34 30.59 0.16 -3.98 16 3 C 0.08 2.90 1.68 29.85 0.05 2.95 16 4 H 0.12 3.60 3.87 -2.39 -0.01 3.59 16 5 O -0.31 -12.34 8.93 -73.72 -0.66 -13.00 16 6 C 0.11 3.52 5.68 22.51 0.13 3.65 16 7 C -0.23 -5.55 7.85 22.37 0.18 -5.37 16 8 C -0.07 -1.33 10.04 22.25 0.22 -1.10 16 9 C -0.16 -2.99 9.70 22.28 0.22 -2.77 16 10 C -0.05 -1.13 5.88 -19.88 -0.12 -1.24 16 11 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 12 C -0.18 -5.31 9.64 22.36 0.22 -5.09 16 13 C 0.45 22.70 6.93 87.66 0.61 23.31 16 14 O -0.61 -37.44 16.46 15.61 0.26 -37.19 16 15 N -0.47 -22.98 2.11 -635.53 -1.34 -24.32 16 16 C -0.34 -20.16 9.33 84.04 0.78 -19.38 16 17 H 0.04 2.61 7.95 -2.91 -0.02 2.59 16 18 C 0.02 0.92 5.35 84.93 0.45 1.37 16 19 N -0.91 -54.63 13.96 21.67 0.30 -54.32 16 20 Si 0.94 40.57 25.36 68.60 1.74 42.31 16 21 H -0.22 -7.87 6.29 99.48 0.63 -7.25 16 22 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.06 2.21 4.47 86.38 0.39 2.60 16 25 C -0.16 -4.89 10.18 71.98 0.73 -4.15 16 26 H 0.05 1.18 6.97 -2.39 -0.02 1.17 16 27 H 0.08 1.36 6.99 -2.39 -0.02 1.34 16 28 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.10 2.64 6.12 -2.38 -0.01 2.62 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.14 3.01 4.77 -2.91 -0.01 2.99 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.03 8.08 -2.39 -0.02 1.02 16 36 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 37 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.07 2.72 3.20 -2.39 -0.01 2.71 16 40 H 0.11 2.92 4.50 -2.38 -0.01 2.91 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.05 1.63 7.72 -2.38 -0.02 1.61 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -81.27 339.49 6.59 -74.68 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.93 Total: 24.54 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.36 Total: -12.69 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.04 Total: -78.65 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.40 Total: -50.18 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.74 Total: 42.31 kcal Total: -81.27 6.59 -74.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267617230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.124 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds