Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46944 * 2 1 4 4 H 1.09001 * 109.46760 * 54.80858 * 3 2 1 5 5 O 1.42901 * 109.47379 * 294.80455 * 3 2 1 6 6 C 1.42899 * 113.99629 * 110.70754 * 5 3 2 7 7 C 1.50703 * 109.47135 * 174.80505 * 3 2 1 8 8 O 1.21276 * 119.99984 * 115.00380 * 7 3 2 9 9 N 1.34776 * 119.99873 * 295.00127 * 7 3 2 10 10 C 1.46506 * 119.99798 * 180.02562 * 9 7 3 11 11 H 1.08994 * 109.47110 * 324.99652 * 10 9 7 12 12 C 1.53004 * 109.46834 * 204.99750 * 10 9 7 13 13 C 1.50704 * 109.46864 * 65.00251 * 12 10 9 14 14 H 1.07999 * 120.00015 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99847 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47290 * 89.99720 * 17 15 13 19 19 H 1.48504 * 109.46852 * 209.99728 * 17 15 13 20 20 H 1.48498 * 109.47379 * 329.99248 * 17 15 13 21 21 C 1.50701 * 109.47217 * 85.00149 * 10 9 7 22 22 C 1.38233 * 119.99943 * 39.72572 * 21 10 9 23 23 C 1.38239 * 119.99673 * 179.79123 * 22 21 10 24 24 C 1.38238 * 119.99986 * 0.44189 * 23 22 21 25 25 C 1.38230 * 119.99980 * 359.80700 * 24 23 22 26 26 C 1.38235 * 120.00239 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46483 * 181.74787 * 1 2 3 28 28 H 1.08992 * 109.47402 * 61.75142 * 1 2 3 29 29 H 1.08995 * 109.47278 * 301.74317 * 1 2 3 30 30 H 1.08999 * 109.47368 * 119.99839 * 2 1 3 31 31 H 1.09000 * 109.46949 * 240.00144 * 2 1 3 32 32 H 1.08993 * 109.47614 * 55.65635 * 6 5 3 33 33 H 1.09006 * 109.46521 * 175.65486 * 6 5 3 34 34 H 1.09000 * 109.47415 * 295.65021 * 6 5 3 35 35 H 0.97004 * 120.00205 * 359.97438 * 9 7 3 36 36 H 1.09002 * 109.46838 * 184.99873 * 12 10 9 37 37 H 1.08997 * 109.47329 * 305.00418 * 12 10 9 38 38 H 0.97007 * 119.99368 * 180.02562 * 16 15 13 39 39 H 1.07995 * 120.00369 * 359.97438 * 22 21 10 40 40 H 1.08002 * 119.99802 * 180.27115 * 23 22 21 41 41 H 1.07996 * 119.99727 * 179.83979 * 24 23 22 42 42 H 1.07998 * 120.00331 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00449 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9824 0.8399 5 8 1.6659 2.0800 -1.2230 6 6 0.6745 3.0976 -1.0683 7 6 3.5415 1.4445 0.1287 8 8 4.2275 1.8603 -0.7809 9 7 4.1220 0.9842 1.2546 10 6 5.5816 0.9867 1.3798 11 1 6.0300 0.7786 0.4084 12 6 6.0094 -0.0892 2.3800 13 6 5.6583 -1.4497 1.8351 14 1 5.1778 -1.5381 0.8720 15 6 5.9497 -2.5815 2.5666 16 7 6.5345 -2.4738 3.7397 17 14 5.5139 -4.2678 1.8915 18 1 6.6523 -4.7913 1.0945 19 1 5.2307 -5.1937 3.0175 20 1 4.3122 -4.1591 1.0260 21 6 6.0418 2.3366 1.8668 22 6 5.3175 3.0056 2.8356 23 6 5.7420 4.2420 3.2853 24 6 6.8857 4.8133 2.7596 25 6 7.6071 4.1466 1.7871 26 6 7.1852 2.9082 1.3406 27 1 -0.3632 -1.0273 0.0313 28 1 -0.3634 0.4863 -0.9052 29 1 -0.3633 0.5406 0.8739 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.0203 3.8347 -0.3437 33 1 0.5014 3.5849 -2.0279 34 1 -0.2543 2.6494 -0.7156 35 1 3.5733 0.6520 1.9823 36 1 7.0859 -0.0288 2.5404 37 1 5.4917 0.0678 3.3263 38 1 6.7398 -3.2701 4.2542 39 1 4.4216 2.5612 3.2433 40 1 5.1785 4.7627 4.0454 41 1 7.2159 5.7803 3.1091 42 1 8.5005 4.5931 1.3761 43 1 7.7486 2.3875 0.5805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269625758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -73.341002 kcal Electronic energy + Delta-G solvation = -23722.781997 eV Core-core repulsion = 20346.445732 eV Total energy + Delta-G solvation = -3376.336265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86848 -38.76546 -37.35301 -35.10226 -33.46501 -32.65180 -31.03952 -30.45344 -28.91342 -27.97400 -25.88567 -24.65377 -22.31459 -22.07858 -21.93607 -20.34350 -19.66901 -17.24839 -16.98792 -16.48526 -16.15231 -15.63334 -15.17823 -14.83954 -14.59619 -14.39961 -14.02259 -13.90903 -13.62545 -13.20061 -13.02457 -12.75931 -12.58890 -12.37348 -12.11448 -11.87866 -11.64392 -11.49381 -11.38405 -11.12957 -10.93522 -10.77468 -10.72862 -10.60764 -10.45345 -9.98829 -9.78453 -9.31432 -8.98481 -8.54861 -8.46299 -8.40245 -8.17937 -6.09921 -4.13316 1.77829 1.80136 3.08008 3.26968 3.34135 3.36477 3.37100 4.10794 4.27303 4.39279 4.85848 4.92044 5.09437 5.25203 5.25745 5.26607 5.27286 5.27844 5.32787 5.38370 5.52681 5.57823 5.60296 5.72639 5.90521 5.94027 5.98125 6.08696 6.17623 6.28635 6.35702 6.43557 6.58237 6.84081 6.85375 6.91013 7.06657 7.14079 7.40414 7.48742 7.62804 7.86925 8.13431 8.25464 8.78779 8.92749 9.51800 11.00569 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008651 B = 0.007291 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.901735 B = 3839.360135 C = 6469.715108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.075 3.925 4 H 0.083 0.917 5 O -0.357 6.357 6 C 0.028 3.972 7 C 0.502 3.498 8 O -0.531 6.531 9 N -0.699 5.699 10 C 0.185 3.815 11 H 0.087 0.913 12 C 0.024 3.976 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.071 4.071 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.108 4.108 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.400 0.600 36 H 0.034 0.966 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 11.006 -2.176 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.013 3.987 4 H 0.101 0.899 5 O -0.274 6.274 6 C -0.069 4.069 7 C 0.287 3.713 8 O -0.407 6.407 9 N -0.350 5.350 10 C 0.081 3.919 11 H 0.105 0.895 12 C -0.013 4.013 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.234 0.766 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.781 11.142 -2.875 14.475 hybrid contribution -0.534 -1.038 0.401 1.234 sum -9.315 10.105 -2.474 13.964 Atomic orbital electron populations 1.21767 0.95181 1.02104 1.01614 1.21896 0.96564 0.94502 1.04413 1.22085 0.92726 0.95368 0.88515 0.89875 1.88024 1.58651 1.52203 1.28547 1.22909 0.90913 0.90512 1.02519 1.20603 0.89808 0.78094 0.82831 1.90667 1.64682 1.46181 1.39193 1.45952 1.08124 1.63194 1.17724 1.20248 0.78858 0.91131 1.01686 0.89516 1.19391 0.97760 0.91168 0.92987 1.21139 1.39744 0.90538 1.04378 0.92321 1.24986 0.95087 0.99208 0.94837 1.69966 1.41717 1.29322 1.12064 0.86607 0.78947 0.84039 0.78518 1.20632 1.21277 1.19814 1.20568 0.94779 0.96616 0.95265 1.20898 0.99895 0.94871 0.97068 1.21038 0.97137 0.96001 1.00175 1.20991 0.96248 0.99843 0.98254 1.21044 0.99736 0.95423 0.97827 1.21030 0.96640 0.95233 0.99737 0.92181 0.92390 0.92900 0.89560 0.90346 0.94066 0.89591 0.93940 0.76569 0.94753 0.95723 0.92882 0.86615 0.86757 0.86843 0.86590 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.31 37.16 0.35 -1.20 16 2 C -0.14 -1.79 5.61 -26.73 -0.15 -1.94 16 3 C 0.07 1.07 2.65 -27.88 -0.07 1.00 16 4 H 0.08 0.97 7.59 -51.93 -0.39 0.57 16 5 O -0.36 -5.46 9.49 -55.09 -0.52 -5.98 16 6 C 0.03 0.30 10.48 101.05 1.06 1.36 16 7 C 0.50 9.25 7.14 -10.98 -0.08 9.17 16 8 O -0.53 -11.97 16.17 -14.30 -0.23 -12.21 16 9 N -0.70 -12.57 3.92 -54.93 -0.22 -12.79 16 10 C 0.18 3.78 2.12 -69.08 -0.15 3.63 16 11 H 0.09 1.96 7.44 -51.93 -0.39 1.58 16 12 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 13 C -0.52 -13.59 8.84 -34.44 -0.30 -13.89 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.07 -1.33 4.91 -104.62 -0.51 -1.85 16 22 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 24 C -0.14 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 26 C -0.11 -1.91 9.67 -39.58 -0.38 -2.29 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.59 7.04 -51.93 -0.37 0.23 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.14 7.76 -51.93 -0.40 0.73 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.37 7.06 -51.93 -0.37 0.00 16 35 H 0.40 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.12 1.79 7.71 -52.49 -0.40 1.38 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.12 2.05 8.04 -52.49 -0.42 1.63 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -32.07 361.97 -8.68 -40.75 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.85 Total: 6.62 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -2.03 Total: -13.07 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.52 Total: -37.40 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.75 Total: -18.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.07 -8.68 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.594 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds