Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46944 * 2 1 4 4 H 1.09001 * 109.46760 * 54.80858 * 3 2 1 5 5 O 1.42901 * 109.47379 * 294.80455 * 3 2 1 6 6 C 1.42899 * 113.99629 * 110.70754 * 5 3 2 7 7 C 1.50703 * 109.47135 * 174.80505 * 3 2 1 8 8 O 1.21276 * 119.99984 * 115.00380 * 7 3 2 9 9 N 1.34776 * 119.99873 * 295.00127 * 7 3 2 10 10 C 1.46506 * 119.99798 * 180.02562 * 9 7 3 11 11 H 1.08994 * 109.47110 * 324.99652 * 10 9 7 12 12 C 1.53004 * 109.46834 * 204.99750 * 10 9 7 13 13 C 1.50704 * 109.46864 * 65.00251 * 12 10 9 14 14 H 1.07999 * 120.00015 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99847 * 180.02562 * 13 12 10 16 16 N 1.31519 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99947 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47290 * 89.99720 * 17 15 13 19 19 H 1.48504 * 109.46852 * 209.99728 * 17 15 13 20 20 H 1.48498 * 109.47379 * 329.99248 * 17 15 13 21 21 C 1.50701 * 109.47217 * 85.00149 * 10 9 7 22 22 C 1.38233 * 119.99943 * 39.72572 * 21 10 9 23 23 C 1.38239 * 119.99673 * 179.79123 * 22 21 10 24 24 C 1.38238 * 119.99986 * 0.44189 * 23 22 21 25 25 C 1.38230 * 119.99980 * 359.80700 * 24 23 22 26 26 C 1.38235 * 120.00239 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46483 * 181.74787 * 1 2 3 28 28 H 1.08992 * 109.47402 * 61.75142 * 1 2 3 29 29 H 1.08995 * 109.47278 * 301.74317 * 1 2 3 30 30 H 1.08999 * 109.47368 * 119.99839 * 2 1 3 31 31 H 1.09000 * 109.46949 * 240.00144 * 2 1 3 32 32 H 1.08993 * 109.47614 * 55.65635 * 6 5 3 33 33 H 1.09006 * 109.46521 * 175.65486 * 6 5 3 34 34 H 1.09000 * 109.47415 * 295.65021 * 6 5 3 35 35 H 0.97004 * 120.00205 * 359.97438 * 9 7 3 36 36 H 1.09002 * 109.46838 * 184.99873 * 12 10 9 37 37 H 1.08997 * 109.47329 * 305.00418 * 12 10 9 38 38 H 0.97007 * 119.99368 * 180.02562 * 16 15 13 39 39 H 1.07995 * 120.00369 * 359.97438 * 22 21 10 40 40 H 1.08002 * 119.99802 * 180.27115 * 23 22 21 41 41 H 1.07996 * 119.99727 * 179.83979 * 24 23 22 42 42 H 1.07998 * 120.00331 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00449 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9824 0.8399 5 8 1.6659 2.0800 -1.2230 6 6 0.6745 3.0976 -1.0683 7 6 3.5415 1.4445 0.1287 8 8 4.2275 1.8603 -0.7809 9 7 4.1220 0.9842 1.2546 10 6 5.5816 0.9867 1.3798 11 1 6.0300 0.7786 0.4084 12 6 6.0094 -0.0892 2.3800 13 6 5.6583 -1.4497 1.8351 14 1 5.1778 -1.5381 0.8720 15 6 5.9497 -2.5815 2.5666 16 7 6.5345 -2.4738 3.7397 17 14 5.5139 -4.2678 1.8915 18 1 6.6523 -4.7913 1.0945 19 1 5.2307 -5.1937 3.0175 20 1 4.3122 -4.1591 1.0260 21 6 6.0418 2.3366 1.8668 22 6 5.3175 3.0056 2.8356 23 6 5.7420 4.2420 3.2853 24 6 6.8857 4.8133 2.7596 25 6 7.6071 4.1466 1.7871 26 6 7.1852 2.9082 1.3406 27 1 -0.3632 -1.0273 0.0313 28 1 -0.3634 0.4863 -0.9052 29 1 -0.3633 0.5406 0.8739 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.0203 3.8347 -0.3437 33 1 0.5014 3.5849 -2.0279 34 1 -0.2543 2.6494 -0.7156 35 1 3.5733 0.6520 1.9823 36 1 7.0859 -0.0288 2.5404 37 1 5.4917 0.0678 3.3263 38 1 6.7398 -3.2701 4.2542 39 1 4.4216 2.5612 3.2433 40 1 5.1785 4.7627 4.0454 41 1 7.2159 5.7803 3.1091 42 1 8.5005 4.5931 1.3761 43 1 7.7486 2.3875 0.5805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269625758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -91.892339 kcal Electronic energy + Delta-G solvation = -23723.586444 eV Core-core repulsion = 20346.445732 eV Total energy + Delta-G solvation = -3377.140711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28067 -40.01185 -38.59142 -36.74234 -34.85084 -34.32260 -32.43041 -31.69823 -30.57451 -29.07266 -27.10148 -26.19304 -23.80436 -23.44222 -23.11862 -21.73278 -21.14035 -18.78168 -18.36915 -18.02266 -17.51038 -16.96903 -16.49405 -16.35791 -16.15559 -15.68428 -15.26830 -15.12086 -14.85651 -14.49241 -14.22599 -14.18746 -14.09741 -13.68753 -13.46144 -13.39945 -12.96506 -12.91159 -12.66932 -12.51163 -12.42223 -12.30182 -12.13703 -11.88268 -11.75855 -11.59703 -11.32818 -11.15834 -10.60859 -10.30491 -9.99466 -9.76302 -9.52551 -8.20073 -6.30061 0.50185 0.55151 1.39384 1.41627 1.51348 1.64530 2.07880 2.40155 2.92654 3.04572 3.14843 3.72878 3.86753 3.89112 4.02602 4.03892 4.20530 4.31630 4.34005 4.41965 4.46954 4.53212 4.61661 4.64795 4.75840 4.78072 4.82466 4.85437 5.10159 5.11908 5.15563 5.19401 5.26900 5.37970 5.42951 5.59671 5.60454 5.63412 5.77917 5.88254 6.11242 6.15905 6.20453 6.69720 6.82313 7.33484 7.39014 8.90579 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.008651 B = 0.007291 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.901735 B = 3839.360135 C = 6469.715108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.084 3.916 4 H 0.118 0.882 5 O -0.388 6.388 6 C 0.020 3.980 7 C 0.497 3.503 8 O -0.580 6.580 9 N -0.691 5.691 10 C 0.200 3.800 11 H 0.053 0.947 12 C 0.039 3.961 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.954 3.046 18 H -0.281 1.281 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.002 0.998 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 12.337 -1.336 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.023 3.977 4 H 0.135 0.865 5 O -0.306 6.306 6 C -0.076 4.076 7 C 0.284 3.716 8 O -0.459 6.459 9 N -0.342 5.342 10 C 0.095 3.905 11 H 0.071 0.929 12 C 0.002 3.998 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.779 3.221 18 H -0.207 1.207 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.101 4.101 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.021 0.979 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.748 12.473 -2.023 16.589 hybrid contribution 0.115 -1.360 0.136 1.371 sum -10.633 11.114 -1.887 15.496 Atomic orbital electron populations 1.21731 0.92425 1.03031 1.02760 1.21890 0.98897 0.93337 1.03108 1.22069 0.89304 0.96619 0.89701 0.86451 1.87992 1.60046 1.53404 1.29131 1.23172 0.90873 0.89913 1.03621 1.21476 0.91761 0.76680 0.81713 1.90634 1.66251 1.48362 1.40693 1.45830 1.07140 1.62976 1.18254 1.19721 0.80286 0.91708 0.98792 0.92880 1.19127 0.95580 0.91724 0.93394 1.21379 1.39400 0.91806 1.04059 0.92906 1.25749 0.94961 1.02842 0.95044 1.70072 1.42768 1.30388 1.13245 0.85619 0.78799 0.79621 0.78054 1.20716 1.20492 1.18858 1.20463 0.96192 0.96171 0.97252 1.21090 1.00173 0.95916 0.96772 1.21461 0.97369 0.95034 1.00241 1.21479 0.95383 1.00954 0.96885 1.21381 1.00670 0.94281 0.97850 1.21176 0.96885 0.96860 1.00481 0.91499 0.92117 0.90742 0.89782 0.92803 0.93438 0.88560 0.91398 0.75424 0.97931 0.96612 0.92718 0.85778 0.83320 0.83033 0.83949 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.31 71.98 0.67 -1.91 16 2 C -0.13 -3.43 5.61 30.59 0.17 -3.26 16 3 C 0.08 2.35 2.65 29.85 0.08 2.42 16 4 H 0.12 2.42 7.59 -2.39 -0.02 2.41 16 5 O -0.39 -11.50 9.49 -129.99 -1.23 -12.73 16 6 C 0.02 0.38 10.48 113.37 1.19 1.57 16 7 C 0.50 18.73 7.14 87.66 0.63 19.36 16 8 O -0.58 -27.34 16.17 15.97 0.26 -27.08 16 9 N -0.69 -25.64 3.92 -446.09 -1.75 -27.38 16 10 C 0.20 8.67 2.12 44.25 0.09 8.76 16 11 H 0.05 2.62 7.44 -2.39 -0.02 2.60 16 12 C 0.04 1.96 4.50 29.85 0.13 2.10 16 13 C -0.53 -28.58 8.84 25.60 0.23 -28.35 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.71 5.46 84.65 0.46 1.17 16 16 N -0.92 -53.60 13.29 21.45 0.28 -53.31 16 17 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 21 C -0.10 -3.87 4.91 -19.87 -0.10 -3.97 16 22 C -0.12 -4.00 9.33 22.27 0.21 -3.79 16 23 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 24 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 25 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.14 -4.97 9.67 22.27 0.22 -4.76 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.08 7.04 -2.39 -0.02 1.06 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 2.15 7.76 -2.39 -0.02 2.13 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.07 0.94 7.06 -2.39 -0.02 0.93 16 35 H 0.41 13.36 8.31 -92.71 -0.77 12.59 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 39 H 0.12 3.74 7.71 -2.91 -0.02 3.72 16 40 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 41 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 42 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 43 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 Total: -1.00 -72.36 361.97 4.45 -67.91 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.22 Total: 27.64 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.65 Total: -20.25 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.46 Total: -80.70 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.97 Total: -39.81 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -72.36 4.45 -67.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.983 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds