Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 H 1.09007 * 109.46961 * 304.92444 * 3 2 1 5 5 O 1.42895 * 109.47008 * 64.91754 * 3 2 1 6 6 C 1.42895 * 114.00214 * 206.22803 * 5 3 2 7 7 C 1.50697 * 109.47215 * 184.92069 * 3 2 1 8 8 O 1.21271 * 119.99984 * 244.99990 * 7 3 2 9 9 N 1.34781 * 119.99750 * 64.99960 * 7 3 2 10 10 C 1.46498 * 119.99838 * 184.91248 * 9 7 3 11 11 H 1.09007 * 109.47240 * 322.03358 * 10 9 7 12 12 C 1.52998 * 109.47242 * 82.03297 * 10 9 7 13 13 C 1.50699 * 109.46921 * 184.41140 * 12 10 9 14 14 H 1.07994 * 120.00842 * 5.23685 * 13 12 10 15 15 C 1.37877 * 119.99826 * 185.23690 * 13 12 10 16 16 N 1.31519 * 120.00401 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00322 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47215 * 89.99953 * 17 15 13 19 19 H 1.48500 * 109.47512 * 210.00295 * 17 15 13 20 20 H 1.48498 * 109.46854 * 330.00109 * 17 15 13 21 21 C 1.50695 * 109.47266 * 202.03619 * 10 9 7 22 22 C 1.38235 * 119.99902 * 319.72484 * 21 10 9 23 23 C 1.38237 * 120.00106 * 179.81126 * 22 21 10 24 24 C 1.38240 * 119.99830 * 0.39272 * 23 22 21 25 25 C 1.38227 * 119.99882 * 359.86209 * 24 23 22 26 26 C 1.38236 * 120.00460 * 359.95293 * 25 24 23 27 27 H 1.08998 * 109.47120 * 304.82504 * 1 2 3 28 28 H 1.08997 * 109.47169 * 64.82842 * 1 2 3 29 29 H 1.09001 * 109.46887 * 184.82663 * 1 2 3 30 30 H 1.09003 * 109.46946 * 240.00271 * 2 1 3 31 31 H 1.08999 * 109.47096 * 120.00167 * 2 1 3 32 32 H 1.09007 * 109.47234 * 64.96382 * 6 5 3 33 33 H 1.09004 * 109.47436 * 184.96087 * 6 5 3 34 34 H 1.09000 * 109.47542 * 304.96305 * 6 5 3 35 35 H 0.96997 * 120.00297 * 4.91585 * 9 7 3 36 36 H 1.09003 * 109.47356 * 304.41306 * 12 10 9 37 37 H 1.08994 * 109.46875 * 64.41657 * 12 10 9 38 38 H 0.96995 * 120.00248 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.00169 * 359.97438 * 22 21 10 40 40 H 1.08006 * 120.00039 * 180.23605 * 23 22 21 41 41 H 1.07997 * 119.99533 * 179.83635 * 24 23 22 42 42 H 1.08000 * 120.00097 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00425 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 -0.8427 5 8 1.6603 2.0819 1.2202 6 6 1.5373 3.5019 1.1185 7 6 3.5421 1.4443 -0.1219 8 8 4.2239 1.8615 0.7901 9 7 4.1276 0.9822 -1.2445 10 6 5.5872 0.8833 -1.3218 11 1 6.0367 1.7370 -0.8144 12 6 6.0471 -0.4108 -0.6476 13 6 7.5532 -0.4607 -0.6310 14 1 8.1255 0.3855 -0.9811 15 6 8.2005 -1.5869 -0.1688 16 7 7.5037 -2.6178 0.2572 17 14 10.0674 -1.6487 -0.1475 18 1 10.5650 -1.1320 1.1528 19 1 10.5184 -3.0520 -0.3278 20 1 10.6029 -0.8110 -1.2505 21 6 6.0143 0.8760 -2.7670 22 6 5.2836 0.1646 -3.7001 23 6 5.6731 0.1611 -5.0264 24 6 6.7981 0.8624 -5.4183 25 6 7.5318 1.5695 -4.4843 26 6 7.1401 1.5762 -3.1586 27 1 -0.3633 0.5869 0.8436 28 1 -0.3633 0.4371 -0.9300 29 1 -0.3633 -1.0240 0.0865 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.7184 3.7482 0.4424 33 1 1.3331 3.9205 2.1040 34 1 2.4663 3.9204 0.7314 35 1 3.5826 0.7153 -2.0012 36 1 5.6713 -0.4411 0.3752 37 1 5.6614 -1.2663 -1.2020 38 1 7.9591 -3.4102 0.5820 39 1 4.4068 -0.3864 -3.3934 40 1 5.0999 -0.3917 -5.7561 41 1 7.1038 0.8575 -6.4540 42 1 8.4109 2.1172 -4.7903 43 1 7.7131 2.1290 -2.4289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269625760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -70.692341 kcal Electronic energy + Delta-G solvation = -23657.429503 eV Core-core repulsion = 20281.208092 eV Total energy + Delta-G solvation = -3376.221411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95480 -38.83155 -37.23476 -35.01355 -33.70661 -32.70288 -31.04776 -30.43376 -28.69915 -27.72078 -26.12209 -24.52593 -22.40841 -22.19158 -21.92207 -20.38389 -19.50271 -17.65348 -16.98838 -16.44933 -16.00831 -15.43586 -14.99713 -14.82869 -14.55162 -14.34699 -14.01663 -13.94867 -13.73597 -13.29447 -12.97776 -12.82548 -12.49083 -12.42398 -12.15442 -11.94167 -11.56851 -11.49323 -11.18934 -11.10484 -10.86326 -10.76816 -10.69307 -10.64007 -10.37642 -10.00886 -9.93726 -9.26107 -8.88946 -8.50979 -8.48031 -8.33348 -8.03291 -5.98429 -3.99694 1.81181 1.84594 3.00311 3.34289 3.39933 3.42282 3.48867 3.87793 4.26789 4.48615 4.85363 4.88963 5.02868 5.22499 5.24347 5.27390 5.29848 5.36508 5.39581 5.44843 5.50723 5.52196 5.70645 5.73071 5.90735 5.90967 5.98243 6.09013 6.19170 6.25394 6.37916 6.50282 6.73079 6.82338 6.85811 6.89593 7.05686 7.16279 7.42651 7.63247 7.70203 7.98762 8.01950 8.37051 8.69424 9.04172 9.63148 11.13276 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.005357 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.348304 B = 5225.114353 C = 6461.615869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.080 0.920 5 O -0.357 6.357 6 C 0.031 3.969 7 C 0.486 3.514 8 O -0.521 6.521 9 N -0.722 5.722 10 C 0.181 3.819 11 H 0.085 0.915 12 C 0.025 3.975 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.047 4.047 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.390 0.610 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 8.277 -8.421 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.097 0.903 5 O -0.274 6.274 6 C -0.066 4.066 7 C 0.270 3.730 8 O -0.396 6.396 9 N -0.375 5.375 10 C 0.078 3.922 11 H 0.103 0.897 12 C -0.012 4.012 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.047 4.047 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.139 4.139 26 C -0.116 4.116 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.224 0.776 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.762 8.303 -7.476 16.223 hybrid contribution 1.030 -0.256 -0.562 1.202 sum -10.732 8.047 -8.039 15.638 Atomic orbital electron populations 1.21724 0.94720 1.02083 1.01966 1.21569 0.96806 0.92883 1.04197 1.22114 0.91399 0.96276 0.88807 0.90270 1.87977 1.88287 1.19563 1.31534 1.22802 0.99824 0.81408 1.02542 1.21218 0.90812 0.78178 0.82789 1.90720 1.64971 1.45446 1.38494 1.46330 1.08564 1.66227 1.16386 1.20319 0.77560 1.02784 0.91563 0.89744 1.19412 0.96476 0.89596 0.95749 1.21046 0.91015 1.00815 1.42163 0.92434 1.24943 0.98150 0.95674 0.95345 1.69960 1.35238 1.05110 1.42993 0.86622 0.85996 0.77179 0.78434 1.20644 1.21286 1.19816 1.19904 0.95073 0.95135 0.94599 1.20829 1.00481 0.99432 0.93046 1.20975 0.97392 0.99744 0.95829 1.20976 0.96272 0.99038 0.99015 1.21037 0.99495 0.99945 0.93399 1.20974 0.96109 0.98971 0.95578 0.91855 0.92973 0.92272 0.89947 0.90034 0.94343 0.89505 0.93596 0.77551 0.95778 0.95845 0.93042 0.86713 0.86707 0.86880 0.86642 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.86 37.16 0.37 -1.07 16 2 C -0.12 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.08 1.04 2.51 -27.88 -0.07 0.97 16 4 H 0.08 0.85 7.88 -51.92 -0.41 0.44 16 5 O -0.36 -5.37 9.37 -55.09 -0.52 -5.89 16 6 C 0.03 0.36 10.73 101.05 1.08 1.45 16 7 C 0.49 8.78 6.86 -10.99 -0.08 8.71 16 8 O -0.52 -11.95 16.08 -14.30 -0.23 -12.18 16 9 N -0.72 -12.29 4.93 -54.94 -0.27 -12.56 16 10 C 0.18 3.74 2.21 -69.09 -0.15 3.58 16 11 H 0.08 1.91 7.47 -51.93 -0.39 1.52 16 12 C 0.03 0.66 4.69 -27.88 -0.13 0.53 16 13 C -0.51 -14.33 8.51 -34.44 -0.29 -14.62 16 14 H 0.06 1.56 6.69 -52.49 -0.35 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.05 -0.86 4.46 -104.63 -0.47 -1.33 16 22 C -0.12 -1.94 9.02 -39.58 -0.36 -2.30 16 23 C -0.12 -1.76 10.05 -39.58 -0.40 -2.15 16 24 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.12 -1.86 10.05 -39.59 -0.40 -2.26 16 26 C -0.10 -1.75 8.76 -39.58 -0.35 -2.09 16 27 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 35 H 0.39 5.30 6.77 -40.82 -0.28 5.02 16 36 H 0.02 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.11 1.66 6.98 -52.49 -0.37 1.29 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.12 2.13 7.84 -52.49 -0.41 1.72 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -34.29 359.97 -8.55 -42.83 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.79 Total: 4.57 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.88 Total: -12.86 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.47 Total: -38.88 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.75 Total: -18.07 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.29 -8.55 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.861 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds