Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 H 1.09007 * 109.46961 * 304.92444 * 3 2 1 5 5 O 1.42895 * 109.47008 * 64.91754 * 3 2 1 6 6 C 1.42895 * 114.00214 * 206.22803 * 5 3 2 7 7 C 1.50697 * 109.47215 * 184.92069 * 3 2 1 8 8 O 1.21271 * 119.99984 * 244.99990 * 7 3 2 9 9 N 1.34781 * 119.99750 * 64.99960 * 7 3 2 10 10 C 1.46498 * 119.99838 * 184.91248 * 9 7 3 11 11 H 1.09007 * 109.47240 * 322.03358 * 10 9 7 12 12 C 1.52998 * 109.47242 * 82.03297 * 10 9 7 13 13 C 1.50699 * 109.46921 * 184.41140 * 12 10 9 14 14 H 1.07994 * 120.00842 * 5.23685 * 13 12 10 15 15 C 1.37877 * 119.99826 * 185.23690 * 13 12 10 16 16 N 1.31519 * 120.00401 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00322 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47215 * 89.99953 * 17 15 13 19 19 H 1.48500 * 109.47512 * 210.00295 * 17 15 13 20 20 H 1.48498 * 109.46854 * 330.00109 * 17 15 13 21 21 C 1.50695 * 109.47266 * 202.03619 * 10 9 7 22 22 C 1.38235 * 119.99902 * 319.72484 * 21 10 9 23 23 C 1.38237 * 120.00106 * 179.81126 * 22 21 10 24 24 C 1.38240 * 119.99830 * 0.39272 * 23 22 21 25 25 C 1.38227 * 119.99882 * 359.86209 * 24 23 22 26 26 C 1.38236 * 120.00460 * 359.95293 * 25 24 23 27 27 H 1.08998 * 109.47120 * 304.82504 * 1 2 3 28 28 H 1.08997 * 109.47169 * 64.82842 * 1 2 3 29 29 H 1.09001 * 109.46887 * 184.82663 * 1 2 3 30 30 H 1.09003 * 109.46946 * 240.00271 * 2 1 3 31 31 H 1.08999 * 109.47096 * 120.00167 * 2 1 3 32 32 H 1.09007 * 109.47234 * 64.96382 * 6 5 3 33 33 H 1.09004 * 109.47436 * 184.96087 * 6 5 3 34 34 H 1.09000 * 109.47542 * 304.96305 * 6 5 3 35 35 H 0.96997 * 120.00297 * 4.91585 * 9 7 3 36 36 H 1.09003 * 109.47356 * 304.41306 * 12 10 9 37 37 H 1.08994 * 109.46875 * 64.41657 * 12 10 9 38 38 H 0.96995 * 120.00248 * 179.97438 * 16 15 13 39 39 H 1.07997 * 120.00169 * 359.97438 * 22 21 10 40 40 H 1.08006 * 120.00039 * 180.23605 * 23 22 21 41 41 H 1.07997 * 119.99533 * 179.83635 * 24 23 22 42 42 H 1.08000 * 120.00097 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00425 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6064 1.9812 -0.8427 5 8 1.6603 2.0819 1.2202 6 6 1.5373 3.5019 1.1185 7 6 3.5421 1.4443 -0.1219 8 8 4.2239 1.8615 0.7901 9 7 4.1276 0.9822 -1.2445 10 6 5.5872 0.8833 -1.3218 11 1 6.0367 1.7370 -0.8144 12 6 6.0471 -0.4108 -0.6476 13 6 7.5532 -0.4607 -0.6310 14 1 8.1255 0.3855 -0.9811 15 6 8.2005 -1.5869 -0.1688 16 7 7.5037 -2.6178 0.2572 17 14 10.0674 -1.6487 -0.1475 18 1 10.5650 -1.1320 1.1528 19 1 10.5184 -3.0520 -0.3278 20 1 10.6029 -0.8110 -1.2505 21 6 6.0143 0.8760 -2.7670 22 6 5.2836 0.1646 -3.7001 23 6 5.6731 0.1611 -5.0264 24 6 6.7981 0.8624 -5.4183 25 6 7.5318 1.5695 -4.4843 26 6 7.1401 1.5762 -3.1586 27 1 -0.3633 0.5869 0.8436 28 1 -0.3633 0.4371 -0.9300 29 1 -0.3633 -1.0240 0.0865 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.7184 3.7482 0.4424 33 1 1.3331 3.9205 2.1040 34 1 2.4663 3.9204 0.7314 35 1 3.5826 0.7153 -2.0012 36 1 5.6713 -0.4411 0.3752 37 1 5.6614 -1.2663 -1.2020 38 1 7.9591 -3.4102 0.5820 39 1 4.4068 -0.3864 -3.3934 40 1 5.0999 -0.3917 -5.7561 41 1 7.1038 0.8575 -6.4540 42 1 8.4109 2.1172 -4.7903 43 1 7.7131 2.1290 -2.4289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269625760.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = -92.377191 kcal Electronic energy + Delta-G solvation = -23658.369828 eV Core-core repulsion = 20281.208092 eV Total energy + Delta-G solvation = -3377.161736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37562 -40.09683 -38.48860 -36.63946 -35.06932 -34.46016 -32.52469 -31.66013 -30.40137 -28.85796 -27.33733 -26.17872 -23.97428 -23.60904 -23.00267 -21.71483 -21.06957 -18.99419 -18.62587 -17.97086 -17.32652 -16.77124 -16.57908 -16.34875 -16.03758 -15.65009 -15.37742 -15.15503 -14.90057 -14.55942 -14.40135 -14.22764 -14.15406 -13.85424 -13.43784 -13.15132 -12.98881 -12.92921 -12.69551 -12.55965 -12.47675 -12.07789 -11.96485 -11.87498 -11.74476 -11.64471 -11.59811 -11.32214 -10.58880 -10.33309 -10.02789 -9.70012 -9.45039 -8.21168 -6.29950 0.55338 0.61303 1.35869 1.37916 1.47962 1.56636 2.14326 2.40432 2.78687 3.00549 3.13596 3.68561 3.85536 3.88200 3.91048 4.05321 4.25154 4.34150 4.35591 4.43481 4.48649 4.51177 4.57697 4.73491 4.80417 4.80943 4.82920 4.86047 5.10282 5.14196 5.18027 5.22328 5.28414 5.43439 5.45471 5.52180 5.65557 5.69749 5.73858 5.89345 6.01479 6.19883 6.23090 6.60590 6.81913 7.28333 7.37415 8.91312 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012127 B = 0.005357 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.348304 B = 5225.114353 C = 6461.615869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.084 3.916 4 H 0.123 0.877 5 O -0.381 6.381 6 C 0.025 3.975 7 C 0.477 3.523 8 O -0.580 6.580 9 N -0.708 5.708 10 C 0.197 3.803 11 H 0.054 0.946 12 C 0.041 3.959 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.278 1.278 19 H -0.280 1.280 20 H -0.259 1.259 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.027 0.973 35 H 0.410 0.590 36 H -0.026 1.026 37 H 0.005 0.995 38 H 0.262 0.738 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 8.579 -11.683 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.140 0.860 5 O -0.299 6.299 6 C -0.071 4.071 7 C 0.264 3.736 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.093 3.907 11 H 0.073 0.927 12 C 0.003 3.997 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.205 1.205 20 H -0.183 1.183 21 C -0.074 4.074 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.248 0.752 36 H -0.008 1.008 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.503 8.612 -10.777 18.618 hybrid contribution 1.228 -0.324 0.422 1.338 sum -11.275 8.288 -10.355 17.409 Atomic orbital electron populations 1.21677 0.92020 1.02863 1.03074 1.21627 0.99054 0.91607 1.03216 1.22242 0.87694 0.97728 0.90034 0.85984 1.87955 1.87961 1.21339 1.32598 1.22999 1.00175 0.79758 1.04143 1.22286 0.92928 0.76587 0.81784 1.90683 1.66767 1.48040 1.40425 1.46139 1.07351 1.65605 1.17091 1.19708 0.79470 0.98514 0.93010 0.92738 1.19146 0.95702 0.91780 0.93112 1.21423 0.92244 1.00916 1.41674 0.92020 1.25869 1.03348 0.95317 0.94919 1.70097 1.37327 1.05799 1.44043 0.85549 0.79817 0.77602 0.78781 1.20379 1.20511 1.18339 1.19747 0.96621 0.97714 0.93289 1.21059 1.00781 0.99066 0.93742 1.21407 0.97516 0.99170 0.95425 1.21459 0.95369 0.97241 1.00509 1.21350 1.00401 1.00061 0.92345 1.21064 0.96272 0.99852 0.96950 0.92455 0.90380 0.91413 0.88759 0.93322 0.90786 0.88451 0.95438 0.75214 1.00767 0.97624 0.92913 0.85445 0.83150 0.83192 0.84227 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.86 71.98 0.71 -1.69 16 2 C -0.12 -2.85 5.61 30.60 0.17 -2.67 16 3 C 0.08 2.29 2.51 29.85 0.07 2.36 16 4 H 0.12 2.27 7.88 -2.38 -0.02 2.25 16 5 O -0.38 -11.48 9.37 -129.99 -1.22 -12.70 16 6 C 0.03 0.57 10.73 113.37 1.22 1.79 16 7 C 0.48 18.06 6.86 87.66 0.60 18.66 16 8 O -0.58 -28.62 16.08 15.99 0.26 -28.36 16 9 N -0.71 -24.97 4.93 -446.11 -2.20 -27.17 16 10 C 0.20 8.64 2.21 44.24 0.10 8.74 16 11 H 0.05 2.68 7.47 -2.38 -0.02 2.66 16 12 C 0.04 2.23 4.69 29.85 0.14 2.37 16 13 C -0.52 -30.58 8.51 25.60 0.22 -30.36 16 14 H 0.06 3.46 6.69 -2.91 -0.02 3.44 16 15 C 0.00 0.18 5.46 84.65 0.46 0.65 16 16 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 17 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 C -0.07 -2.74 4.46 -19.87 -0.09 -2.83 16 22 C -0.13 -3.97 9.02 22.27 0.20 -3.77 16 23 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 26 C -0.12 -4.40 8.76 22.27 0.20 -4.20 16 27 H 0.06 1.07 7.70 -2.39 -0.02 1.06 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 2.02 7.92 -2.39 -0.02 2.00 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.03 0.72 7.94 -2.39 -0.02 0.70 16 35 H 0.41 10.94 6.77 -92.71 -0.63 10.31 16 36 H -0.03 -1.66 8.12 -2.39 -0.02 -1.68 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.13 3.48 6.98 -2.91 -0.02 3.46 16 40 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.11 3.98 7.84 -2.91 -0.02 3.95 16 Total: -1.00 -80.13 359.97 4.18 -75.94 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.36 Total: 22.43 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.67 Total: -19.95 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.91 Total: -85.22 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.96 Total: -41.06 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -80.13 4.18 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269625760.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.437 kcal (2) G-P(sol) polarization free energy of solvation -80.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds