Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47158 * 2 1 4 4 N 1.46500 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99836 * 270.00349 * 4 3 2 6 6 C 1.53007 * 109.46707 * 269.99703 * 5 4 3 7 7 C 1.34774 * 120.00119 * 90.00096 * 4 3 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 4 3 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 4 3 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 4 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.09002 * 109.47467 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47311 * 299.99942 * 1 2 3 27 27 H 1.09003 * 109.47600 * 59.99527 * 1 2 3 28 28 H 1.09006 * 109.46878 * 240.00696 * 2 1 3 29 29 H 1.08996 * 109.47829 * 120.00188 * 2 1 3 30 30 H 1.09006 * 109.47148 * 60.00364 * 3 2 1 31 31 H 1.09003 * 109.47251 * 300.00686 * 3 2 1 32 32 H 1.08998 * 109.47367 * 29.99262 * 5 4 3 33 33 H 1.08997 * 109.47036 * 149.99798 * 5 4 3 34 34 H 1.08997 * 109.47295 * 60.00253 * 6 5 4 35 35 H 1.09002 * 109.46988 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47295 * 299.99936 * 6 5 4 37 37 H 1.09002 * 109.46571 * 59.99894 * 9 7 4 38 38 H 1.08992 * 109.46782 * 300.00158 * 9 7 4 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 42 42 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2379 1.4423 1.2678 6 6 4.4931 2.8848 1.7096 7 6 4.1784 1.4428 -1.1681 8 8 3.5716 1.4434 -2.2182 9 6 5.6854 1.4422 -1.1687 10 6 6.1871 1.4432 -2.5897 11 6 6.4171 0.2453 -3.2420 12 6 6.8781 0.2421 -4.5457 13 6 7.1040 1.4358 -5.2028 14 6 6.8795 2.6399 -4.5489 15 8 7.1063 3.8148 -5.1900 16 6 7.6627 3.7455 -6.4162 17 1 7.8319 2.7844 -6.8789 18 6 8.0176 4.9081 -7.0832 19 7 7.8119 6.0788 -6.5194 20 14 8.7891 4.8120 -8.7817 21 1 7.7209 4.8417 -9.8129 22 1 9.6991 5.9690 -8.9783 23 1 9.5605 3.5491 -8.9043 24 6 6.4171 2.6399 -3.2390 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.6492 0.9284 2.0276 33 1 5.1903 0.9285 1.1370 34 1 3.5408 3.3986 1.8404 35 1 5.0381 2.8847 2.6536 36 1 5.0818 3.3988 0.9498 37 1 6.0485 0.5519 -0.6553 38 1 6.0492 2.3318 -0.6547 39 1 6.2364 -0.6894 -2.7320 40 1 7.0571 -0.6948 -5.0522 41 1 7.4590 1.4326 -6.2228 42 1 8.0605 6.8921 -6.9859 43 1 6.2380 3.5748 -2.7290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270473123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = -50.276004 kcal Electronic energy + Delta-G solvation = -22904.501815 eV Core-core repulsion = 19529.165723 eV Total energy + Delta-G solvation = -3375.336092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08192 -38.80397 -36.69328 -36.02801 -34.05637 -32.29493 -31.80848 -30.41787 -29.16521 -27.66231 -25.76801 -25.07890 -23.53315 -22.04034 -21.54517 -20.75585 -18.95767 -17.57650 -17.11362 -16.91047 -16.24640 -15.43026 -14.96329 -14.88171 -14.42922 -14.34256 -14.05060 -13.87669 -13.58523 -13.41706 -13.28497 -12.79366 -12.54906 -12.52412 -12.31690 -12.12948 -11.84894 -11.76786 -11.55532 -11.47299 -11.22482 -11.19701 -10.84676 -10.75948 -10.69581 -10.54536 -10.39269 -9.60535 -9.26649 -8.77349 -8.71667 -7.98351 -7.14142 -6.37804 -3.96681 2.16944 2.46946 2.81568 3.01707 3.17765 3.17920 3.22739 4.02413 4.48467 4.65745 4.75705 4.79761 4.92913 5.01666 5.06425 5.09571 5.15266 5.17825 5.28395 5.35284 5.47521 5.53138 5.57137 5.59242 5.65351 5.73774 5.81035 5.83885 5.98284 6.00221 6.01182 6.08323 6.25250 6.41409 6.53137 6.73673 6.99516 7.14501 7.34741 7.38176 7.44543 7.51572 7.90734 8.07522 8.35331 9.08068 9.79717 10.80632 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.003195 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.673499 B = 8760.337596 C = 8920.158235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.622 5.622 5 C 0.105 3.895 6 C -0.175 4.175 7 C 0.515 3.485 8 O -0.517 6.517 9 C -0.093 4.093 10 C -0.033 4.033 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -10.575 16.903 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.007 4.007 4 N -0.358 5.358 5 C -0.018 4.018 6 C -0.233 4.233 7 C 0.304 3.696 8 O -0.390 6.390 9 C -0.133 4.133 10 C -0.033 4.033 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.102 3.898 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.501 5.501 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.194 4.194 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.932 -10.076 16.318 20.754 hybrid contribution 0.363 -0.079 -0.768 0.853 sum -7.569 -10.155 15.551 20.056 Atomic orbital electron populations 1.21689 0.95276 1.01800 1.01908 1.21876 0.96048 0.97438 1.02383 1.21455 0.79507 0.96788 1.02970 1.48084 1.06393 1.75198 1.06084 1.21552 0.97337 0.97398 0.85517 1.22246 1.02337 0.96920 1.01810 1.20766 0.90202 0.75645 0.83033 1.90748 1.70080 1.47406 1.30813 1.20652 0.91652 1.04239 0.96719 1.18690 0.98333 0.93113 0.93196 1.20339 1.09106 0.96010 0.96073 1.20670 0.97613 0.96784 0.94245 1.21166 1.10191 0.92127 1.01542 1.19271 0.92704 0.86564 0.91277 1.83976 1.69541 1.24731 1.30175 1.21315 1.39870 0.94656 0.90809 0.89151 1.25266 0.97216 0.94206 0.99860 1.70041 1.44721 0.97408 1.37881 0.85727 0.78890 0.78312 0.80573 1.19930 1.20310 1.19232 1.19935 1.08790 0.97156 0.93480 0.92604 0.92799 0.92377 0.91449 0.92183 0.90981 0.89877 0.90553 0.90103 0.92372 0.91457 0.91908 0.88565 0.88385 0.88027 0.87513 0.85644 0.92140 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.14 -1.32 6.26 -26.73 -0.17 -1.49 16 3 C 0.12 1.21 5.41 -4.04 -0.02 1.19 16 4 N -0.62 -7.06 2.47 -173.68 -0.43 -7.49 16 5 C 0.11 0.81 5.93 -4.04 -0.02 0.78 16 6 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 7 C 0.52 7.91 7.67 -10.98 -0.08 7.82 16 8 O -0.52 -10.43 15.61 5.56 0.09 -10.34 16 9 C -0.09 -1.31 4.38 -29.03 -0.13 -1.44 16 10 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 11 C -0.20 -3.67 9.70 -39.53 -0.38 -4.05 16 12 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 16 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.87 -26.04 13.67 55.48 0.76 -25.28 16 20 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C -0.17 -3.94 9.65 -39.39 -0.38 -4.32 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.58 8.07 -51.93 -0.42 0.17 16 31 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 32 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 0.54 6.44 -51.93 -0.33 0.21 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.56 7.22 -51.93 -0.38 0.19 16 37 H 0.10 1.06 7.35 -51.93 -0.38 0.68 16 38 H 0.10 1.21 7.13 -51.93 -0.37 0.84 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -34.69 358.76 -7.54 -42.23 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.62 Total: 2.99 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.72 Total: -18.22 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.33 Total: -32.77 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.69 -7.54 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270473123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.048 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds