Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47158 * 2 1 4 4 N 1.46500 * 109.47383 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99836 * 270.00349 * 4 3 2 6 6 C 1.53007 * 109.46707 * 269.99703 * 5 4 3 7 7 C 1.34774 * 120.00119 * 90.00096 * 4 3 2 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 4 3 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 4 3 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 4 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.09002 * 109.47467 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47311 * 299.99942 * 1 2 3 27 27 H 1.09003 * 109.47600 * 59.99527 * 1 2 3 28 28 H 1.09006 * 109.46878 * 240.00696 * 2 1 3 29 29 H 1.08996 * 109.47829 * 120.00188 * 2 1 3 30 30 H 1.09006 * 109.47148 * 60.00364 * 3 2 1 31 31 H 1.09003 * 109.47251 * 300.00686 * 3 2 1 32 32 H 1.08998 * 109.47367 * 29.99262 * 5 4 3 33 33 H 1.08997 * 109.47036 * 149.99798 * 5 4 3 34 34 H 1.08997 * 109.47295 * 60.00253 * 6 5 4 35 35 H 1.09002 * 109.46988 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.47295 * 299.99936 * 6 5 4 37 37 H 1.09002 * 109.46571 * 59.99894 * 9 7 4 38 38 H 1.08992 * 109.46782 * 300.00158 * 9 7 4 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 42 42 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2379 1.4423 1.2678 6 6 4.4931 2.8848 1.7096 7 6 4.1784 1.4428 -1.1681 8 8 3.5716 1.4434 -2.2182 9 6 5.6854 1.4422 -1.1687 10 6 6.1871 1.4432 -2.5897 11 6 6.4171 0.2453 -3.2420 12 6 6.8781 0.2421 -4.5457 13 6 7.1040 1.4358 -5.2028 14 6 6.8795 2.6399 -4.5489 15 8 7.1063 3.8148 -5.1900 16 6 7.6627 3.7455 -6.4162 17 1 7.8319 2.7844 -6.8789 18 6 8.0176 4.9081 -7.0832 19 7 7.8119 6.0788 -6.5194 20 14 8.7891 4.8120 -8.7817 21 1 7.7209 4.8417 -9.8129 22 1 9.6991 5.9690 -8.9783 23 1 9.5605 3.5491 -8.9043 24 6 6.4171 2.6399 -3.2390 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6765 1.9564 -0.8899 32 1 3.6492 0.9284 2.0276 33 1 5.1903 0.9285 1.1370 34 1 3.5408 3.3986 1.8404 35 1 5.0381 2.8847 2.6536 36 1 5.0818 3.3988 0.9498 37 1 6.0485 0.5519 -0.6553 38 1 6.0492 2.3318 -0.6547 39 1 6.2364 -0.6894 -2.7320 40 1 7.0571 -0.6948 -5.0522 41 1 7.4590 1.4326 -6.2228 42 1 8.0605 6.8921 -6.9859 43 1 6.2380 3.5748 -2.7290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270473123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = -71.756900 kcal Electronic energy + Delta-G solvation = -22905.433296 eV Core-core repulsion = 19529.165723 eV Total energy + Delta-G solvation = -3376.267573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30404 -40.51716 -38.32617 -37.23286 -34.86874 -34.32119 -33.27358 -31.16110 -30.90746 -29.00093 -27.37952 -26.53348 -24.29477 -23.29335 -23.00872 -22.23417 -20.10993 -19.39945 -18.73801 -18.13101 -17.27642 -16.79321 -16.64337 -16.10293 -15.97955 -15.69404 -15.49198 -15.10434 -14.81363 -14.63861 -14.47161 -14.20066 -14.01182 -13.59720 -13.48695 -13.17712 -12.99952 -12.93081 -12.84332 -12.53335 -12.42713 -12.33359 -12.24100 -12.21391 -12.11686 -11.88251 -11.60192 -11.20955 -10.87378 -10.77899 -9.66062 -9.64212 -8.98616 -8.47407 -6.16195 0.51339 0.74952 1.33503 1.43500 1.51755 1.66050 2.06694 2.17572 2.82930 3.15604 3.42749 3.68862 3.88052 4.05273 4.08202 4.11349 4.12688 4.29160 4.34714 4.38475 4.46274 4.55302 4.58217 4.59921 4.65135 4.72491 4.73170 4.91585 4.94888 5.00939 5.07085 5.12364 5.15304 5.24027 5.29582 5.36187 5.41405 5.64060 5.68817 5.71941 5.74645 6.02329 6.21787 6.42408 6.96950 7.24114 7.78549 8.76294 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022951 B = 0.003195 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.673499 B = 8760.337596 C = 8920.158235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.111 3.889 4 N -0.612 5.612 5 C 0.098 3.902 6 C -0.174 4.174 7 C 0.511 3.489 8 O -0.580 6.580 9 C -0.090 4.090 10 C -0.026 4.026 11 C -0.181 4.181 12 C -0.073 4.073 13 C -0.247 4.247 14 C 0.113 3.887 15 O -0.235 6.235 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.021 2.979 21 H -0.264 1.264 22 H -0.268 1.268 23 H -0.252 1.252 24 C -0.194 4.194 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -13.641 19.277 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.011 4.011 4 N -0.345 5.345 5 C -0.024 4.024 6 C -0.232 4.232 7 C 0.300 3.700 8 O -0.459 6.459 9 C -0.129 4.129 10 C -0.026 4.026 11 C -0.199 4.199 12 C -0.091 4.091 13 C -0.266 4.266 14 C 0.063 3.937 15 O -0.142 6.142 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.189 1.189 22 H -0.193 1.193 23 H -0.175 1.175 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.863 -13.192 18.784 24.263 hybrid contribution 0.208 0.669 -1.196 1.386 sum -7.655 -12.522 17.588 22.907 Atomic orbital electron populations 1.21682 0.94229 1.02432 1.02137 1.21796 0.96947 0.96299 1.01892 1.21572 0.79081 0.97651 1.02794 1.48164 1.06921 1.73027 1.06363 1.21916 0.98302 0.97998 0.84137 1.22238 1.02149 0.96507 1.02311 1.20951 0.90595 0.75124 0.83314 1.90734 1.71183 1.50776 1.33193 1.20754 0.90966 1.07297 0.93877 1.19212 0.96075 0.91816 0.95510 1.20957 1.05847 0.97544 0.95567 1.21133 0.96168 0.96896 0.94854 1.21294 1.10989 0.92730 1.01584 1.19858 0.94527 0.86637 0.92677 1.83935 1.72046 1.27116 1.31104 1.21837 1.40429 0.95594 0.91251 0.88232 1.26627 0.97478 0.93391 1.04633 1.70191 1.47123 0.98403 1.40367 0.84569 0.78111 0.79114 0.74262 1.18940 1.19302 1.17538 1.20191 1.09540 0.98639 0.92935 0.91779 0.90915 0.93836 0.94424 0.89976 0.87965 0.93216 0.87630 0.88354 0.92763 0.89105 0.93935 0.84077 0.86667 0.83601 0.83593 0.86369 0.91836 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.22 6.26 30.59 0.19 -2.03 16 3 C 0.11 2.16 5.41 86.38 0.47 2.63 16 4 N -0.61 -12.44 2.47 -821.79 -2.03 -14.47 16 5 C 0.10 1.09 5.93 86.38 0.51 1.60 16 6 C -0.17 -2.05 10.24 71.98 0.74 -1.32 16 7 C 0.51 14.98 7.67 87.66 0.67 15.66 16 8 O -0.58 -23.76 15.61 -3.04 -0.05 -23.81 16 9 C -0.09 -2.28 4.38 29.10 0.13 -2.16 16 10 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 11 C -0.18 -6.20 9.70 22.30 0.22 -5.98 16 12 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 13 C -0.25 -11.70 9.17 22.39 0.21 -11.49 16 14 C 0.11 6.12 6.65 22.58 0.15 6.27 16 15 O -0.23 -15.08 9.76 -22.74 -0.22 -15.31 16 16 C -0.42 -25.47 9.49 67.92 0.64 -24.82 16 17 H 0.10 5.63 5.21 -2.91 -0.02 5.62 16 18 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 19 N -0.92 -58.71 13.67 21.61 0.30 -58.41 16 20 Si 1.02 44.55 29.55 68.60 2.03 46.57 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 24 C -0.19 -9.11 9.65 22.39 0.22 -8.89 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.36 8.07 -2.38 -0.02 1.34 16 31 H 0.05 1.31 7.42 -2.39 -0.02 1.29 16 32 H 0.11 0.65 8.07 -2.39 -0.02 0.63 16 33 H 0.10 0.80 6.44 -2.39 -0.02 0.78 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.04 0.68 7.22 -2.39 -0.02 0.66 16 37 H 0.14 2.34 7.35 -2.39 -0.02 2.32 16 38 H 0.12 2.58 7.13 -2.39 -0.02 2.56 16 39 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.12 5.64 5.64 -2.91 -0.02 5.62 16 42 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 43 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -84.31 358.76 6.47 -77.85 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.99 Total: 23.99 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 5.46 Total: -36.41 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.74 Total: -72.88 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.27 Total: -39.11 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -84.31 6.47 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270473123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.090 kcal (2) G-P(sol) polarization free energy of solvation -84.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds