Wall clock time and date at job start Tue Mar 31 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46497 * 109.47060 * 179.97438 * 3 2 1 5 5 C 1.37107 * 120.00052 * 88.41135 * 4 3 2 6 6 H 1.07994 * 119.99783 * 92.14518 * 5 4 3 7 7 C 1.38952 * 119.99709 * 272.14531 * 5 4 3 8 8 N 1.31409 * 120.00057 * 26.62945 * 7 5 4 9 9 Si 1.86802 * 119.99866 * 206.62511 * 7 5 4 10 10 H 1.48504 * 109.47005 * 60.00350 * 9 7 5 11 11 H 1.48498 * 109.46722 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47178 * 300.00469 * 9 7 5 13 13 C 1.34776 * 120.00255 * 268.13335 * 4 3 2 14 14 O 1.21296 * 120.00542 * 184.19233 * 13 4 3 15 15 C 1.50701 * 119.99779 * 4.19277 * 13 4 3 16 16 H 1.09002 * 109.47183 * 317.55041 * 15 13 4 17 17 O 1.42892 * 109.47320 * 77.55528 * 15 13 4 18 18 C 1.53007 * 109.47198 * 197.55718 * 15 13 4 19 19 C 1.52998 * 109.47111 * 174.75170 * 18 15 13 20 20 C 1.50701 * 109.46755 * 185.01235 * 19 18 15 21 21 C 1.38236 * 120.00106 * 269.72371 * 20 19 18 22 22 C 1.38237 * 120.00035 * 179.76542 * 21 20 19 23 23 C 1.38237 * 119.99815 * 0.51167 * 22 21 20 24 24 C 1.38237 * 119.99878 * 359.74968 * 23 22 21 25 25 C 1.38230 * 119.99959 * 90.00413 * 20 19 18 26 26 H 1.08997 * 109.47532 * 300.00548 * 1 2 3 27 27 H 1.08998 * 109.46890 * 60.00168 * 1 2 3 28 28 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47532 * 239.99452 * 2 1 3 30 30 H 1.09005 * 109.46296 * 119.99581 * 2 1 3 31 31 H 1.08998 * 109.47367 * 59.99843 * 3 2 1 32 32 H 1.08998 * 109.47021 * 299.99752 * 3 2 1 33 33 H 0.97000 * 119.99834 * 184.97257 * 8 7 5 34 34 H 0.96694 * 114.00357 * 59.99963 * 17 15 13 35 35 H 1.08999 * 109.46878 * 294.75573 * 18 15 13 36 36 H 1.08998 * 109.46941 * 54.74880 * 18 15 13 37 37 H 1.08990 * 109.47302 * 305.01300 * 19 18 15 38 38 H 1.08999 * 109.46991 * 65.01843 * 19 18 15 39 39 H 1.08001 * 120.00081 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00532 * 180.23356 * 22 21 20 41 41 H 1.08001 * 119.99900 * 179.72007 * 23 22 21 42 42 H 1.07998 * 119.99957 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.00115 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1910 1.4093 -1.1860 6 1 4.4915 2.3310 -1.6618 7 6 4.4995 0.1898 -1.7763 8 7 3.7468 -0.8619 -1.5437 9 14 5.9844 0.0454 -2.9005 10 1 7.2132 0.3996 -2.1455 11 1 6.0939 -1.3491 -3.3991 12 1 5.8262 0.9711 -4.0508 13 6 4.1784 1.4806 1.1674 14 8 5.3889 1.5573 1.1669 15 6 3.4274 1.4279 2.4729 16 1 2.5467 2.0673 2.4116 17 8 3.0222 0.0830 2.7354 18 6 4.3349 1.9170 3.6035 19 6 3.5345 1.9879 4.9055 20 6 4.3926 2.5853 5.9907 21 6 5.1679 1.7652 6.7890 22 6 5.9587 2.3136 7.7813 23 6 5.9663 3.6813 7.9823 24 6 5.1869 4.5009 7.1875 25 6 4.4001 3.9529 6.1917 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.0020 -1.7286 -1.8967 34 1 3.7562 -0.5429 2.8031 35 1 5.1678 1.2247 3.7262 36 1 4.7187 2.9074 3.3586 37 1 2.6521 2.6100 4.7562 38 1 3.2261 0.9840 5.1975 39 1 5.1589 0.6963 6.6347 40 1 6.5673 1.6733 8.4026 41 1 6.5807 4.1094 8.7605 42 1 5.1925 5.5694 7.3447 43 1 3.7913 4.5934 5.5707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270933998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:15 Heat of formation + Delta-G solvation = -71.200575 kcal Electronic energy + Delta-G solvation = -23493.968921 eV Core-core repulsion = 20117.725472 eV Total energy + Delta-G solvation = -3376.243449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.46486 -38.86906 -36.21511 -35.06120 -33.68495 -32.39520 -31.19837 -30.90210 -30.00920 -26.73239 -25.51199 -24.23128 -22.58423 -22.26587 -20.73022 -20.53759 -19.20112 -17.24180 -16.75441 -16.22668 -15.86064 -15.36779 -15.14160 -14.70889 -14.50161 -14.20855 -13.52550 -13.50083 -13.36078 -13.14376 -13.04104 -12.63316 -12.54155 -12.32918 -11.80974 -11.71026 -11.24896 -11.22840 -11.15207 -11.05024 -10.98390 -10.67028 -10.60625 -10.57366 -10.33540 -10.16851 -9.91526 -9.26732 -8.93981 -8.68252 -8.52976 -8.20912 -6.91447 -6.24190 -4.27559 1.35212 1.38232 3.26417 3.32741 3.43229 3.76367 3.81233 4.23994 4.60603 4.83337 4.85948 4.96569 4.98843 5.06672 5.10974 5.26324 5.44599 5.49328 5.52974 5.63645 5.77517 5.88799 5.92868 6.02174 6.06377 6.08790 6.10719 6.26842 6.40926 6.41624 6.45117 6.47935 6.55678 6.67635 6.71022 6.79267 6.95581 7.00210 7.41556 7.56616 7.97709 8.02445 8.49215 8.81209 9.17712 9.32012 10.07114 10.69915 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.003943 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.807434 B = 7099.974404 C = 7938.171209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C 0.116 3.884 4 N -0.440 5.440 5 C -0.343 4.343 6 H 0.071 0.929 7 C 0.078 3.922 8 N -0.843 5.843 9 Si 0.898 3.102 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.460 3.540 14 O -0.563 6.563 15 C 0.091 3.909 16 H 0.104 0.896 17 O -0.542 6.542 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.122 0.878 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.375 0.625 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 4.412 14.245 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C -0.007 4.007 4 N -0.162 5.162 5 C -0.470 4.470 6 H 0.089 0.911 7 C -0.130 4.130 8 N -0.476 5.476 9 Si 0.723 3.277 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.246 3.754 14 O -0.444 6.444 15 C 0.029 3.971 16 H 0.122 0.878 17 O -0.346 6.346 18 C -0.164 4.164 19 C -0.116 4.116 20 C -0.072 4.072 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.222 0.778 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.502 4.528 14.100 15.019 hybrid contribution 1.192 -0.384 -0.522 1.357 sum -1.310 4.144 13.577 14.256 Atomic orbital electron populations 1.21739 0.98670 1.00008 0.99755 1.22367 0.92117 0.98023 1.06823 1.21637 0.83578 0.96865 0.98663 1.43240 1.03581 1.65113 1.04260 1.18766 1.36361 0.92395 0.99494 0.91150 1.25624 0.95550 0.95768 0.96101 1.69800 1.32815 1.00753 1.44234 0.86529 0.84071 0.76981 0.80073 1.19532 1.21233 1.19887 1.21428 0.88362 0.79403 0.86205 1.90543 1.14431 1.52044 1.87404 1.22103 0.97861 0.84986 0.92189 0.87808 1.86536 1.36917 1.17302 1.93888 1.21989 0.98354 1.03150 0.92892 1.20618 0.96915 1.01421 0.92614 1.20025 0.97274 0.93617 0.96307 1.21100 0.96858 0.99874 0.95729 1.21131 0.99149 0.95220 0.98307 1.21098 0.99916 0.93888 1.00068 1.21126 0.97023 0.99620 0.96040 1.21099 0.99740 0.94678 0.98177 0.94500 0.94014 0.93980 0.86047 0.91815 0.94545 0.92623 0.92332 0.77772 0.90864 0.90821 0.91101 0.90387 0.86061 0.86311 0.86457 0.86306 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.11 16 2 C -0.16 -3.28 5.74 -26.73 -0.15 -3.44 16 3 C 0.12 2.49 5.19 -4.05 -0.02 2.47 16 4 N -0.44 -10.99 2.35 -114.81 -0.27 -11.26 16 5 C -0.34 -9.47 8.28 -14.93 -0.12 -9.60 16 6 H 0.07 1.98 7.96 -52.49 -0.42 1.56 16 7 C 0.08 2.10 5.46 -17.47 -0.10 2.00 16 8 N -0.84 -22.49 10.40 55.50 0.58 -21.91 16 9 Si 0.90 21.28 29.63 -169.99 -5.04 16.25 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.46 11.00 7.14 -10.99 -0.08 10.92 16 14 O -0.56 -15.44 16.08 5.54 0.09 -15.36 16 15 C 0.09 1.65 2.55 -27.88 -0.07 1.58 16 16 H 0.10 1.77 6.32 -51.93 -0.33 1.44 16 17 O -0.54 -9.51 11.01 -35.23 -0.39 -9.90 16 18 C -0.13 -2.00 4.22 -26.73 -0.11 -2.11 16 19 C -0.08 -1.01 5.19 -27.88 -0.14 -1.16 16 20 C -0.07 -0.92 5.13 -104.63 -0.54 -1.45 16 21 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 22 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 25 C -0.12 -1.42 9.70 -39.59 -0.38 -1.81 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.12 2.98 5.18 -51.93 -0.27 2.71 16 30 H 0.06 1.40 6.09 -51.93 -0.32 1.09 16 31 H 0.04 0.69 5.97 -51.93 -0.31 0.38 16 32 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 33 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 34 H 0.38 6.03 9.04 45.56 0.41 6.45 16 35 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -30.79 353.00 -8.48 -39.27 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.84 Total: 9.27 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.93 Total: -11.68 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.31 Total: -33.17 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.30 Total: -25.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.79 -8.48 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270933998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.930 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds