Wall clock time and date at job start Tue Mar 31 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 N 1.46497 * 109.47060 * 179.97438 * 3 2 1 5 5 C 1.37107 * 120.00052 * 88.41135 * 4 3 2 6 6 H 1.07994 * 119.99783 * 92.14518 * 5 4 3 7 7 C 1.38952 * 119.99709 * 272.14531 * 5 4 3 8 8 N 1.31409 * 120.00057 * 26.62945 * 7 5 4 9 9 Si 1.86802 * 119.99866 * 206.62511 * 7 5 4 10 10 H 1.48504 * 109.47005 * 60.00350 * 9 7 5 11 11 H 1.48498 * 109.46722 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47178 * 300.00469 * 9 7 5 13 13 C 1.34776 * 120.00255 * 268.13335 * 4 3 2 14 14 O 1.21296 * 120.00542 * 184.19233 * 13 4 3 15 15 C 1.50701 * 119.99779 * 4.19277 * 13 4 3 16 16 H 1.09002 * 109.47183 * 317.55041 * 15 13 4 17 17 O 1.42892 * 109.47320 * 77.55528 * 15 13 4 18 18 C 1.53007 * 109.47198 * 197.55718 * 15 13 4 19 19 C 1.52998 * 109.47111 * 174.75170 * 18 15 13 20 20 C 1.50701 * 109.46755 * 185.01235 * 19 18 15 21 21 C 1.38236 * 120.00106 * 269.72371 * 20 19 18 22 22 C 1.38237 * 120.00035 * 179.76542 * 21 20 19 23 23 C 1.38237 * 119.99815 * 0.51167 * 22 21 20 24 24 C 1.38237 * 119.99878 * 359.74968 * 23 22 21 25 25 C 1.38230 * 119.99959 * 90.00413 * 20 19 18 26 26 H 1.08997 * 109.47532 * 300.00548 * 1 2 3 27 27 H 1.08998 * 109.46890 * 60.00168 * 1 2 3 28 28 H 1.08994 * 109.47482 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47532 * 239.99452 * 2 1 3 30 30 H 1.09005 * 109.46296 * 119.99581 * 2 1 3 31 31 H 1.08998 * 109.47367 * 59.99843 * 3 2 1 32 32 H 1.08998 * 109.47021 * 299.99752 * 3 2 1 33 33 H 0.97000 * 119.99834 * 184.97257 * 8 7 5 34 34 H 0.96694 * 114.00357 * 59.99963 * 17 15 13 35 35 H 1.08999 * 109.46878 * 294.75573 * 18 15 13 36 36 H 1.08998 * 109.46941 * 54.74880 * 18 15 13 37 37 H 1.08990 * 109.47302 * 305.01300 * 19 18 15 38 38 H 1.08999 * 109.46991 * 65.01843 * 19 18 15 39 39 H 1.08001 * 120.00081 * 0.02562 * 21 20 19 40 40 H 1.07997 * 120.00532 * 180.23356 * 22 21 20 41 41 H 1.08001 * 119.99900 * 179.72007 * 23 22 21 42 42 H 1.07998 * 119.99957 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.00115 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1910 1.4093 -1.1860 6 1 4.4915 2.3310 -1.6618 7 6 4.4995 0.1898 -1.7763 8 7 3.7468 -0.8619 -1.5437 9 14 5.9844 0.0454 -2.9005 10 1 7.2132 0.3996 -2.1455 11 1 6.0939 -1.3491 -3.3991 12 1 5.8262 0.9711 -4.0508 13 6 4.1784 1.4806 1.1674 14 8 5.3889 1.5573 1.1669 15 6 3.4274 1.4279 2.4729 16 1 2.5467 2.0673 2.4116 17 8 3.0222 0.0830 2.7354 18 6 4.3349 1.9170 3.6035 19 6 3.5345 1.9879 4.9055 20 6 4.3926 2.5853 5.9907 21 6 5.1679 1.7652 6.7890 22 6 5.9587 2.3136 7.7813 23 6 5.9663 3.6813 7.9823 24 6 5.1869 4.5009 7.1875 25 6 4.4001 3.9529 6.1917 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 4.0020 -1.7286 -1.8967 34 1 3.7562 -0.5429 2.8031 35 1 5.1678 1.2247 3.7262 36 1 4.7187 2.9074 3.3586 37 1 2.6521 2.6100 4.7562 38 1 3.2261 0.9840 5.1975 39 1 5.1589 0.6963 6.6347 40 1 6.5673 1.6733 8.4026 41 1 6.5807 4.1094 8.7605 42 1 5.1925 5.5694 7.3447 43 1 3.7913 4.5934 5.5707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270933998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:14 Heat of formation + Delta-G solvation = -88.903264 kcal Electronic energy + Delta-G solvation = -23494.736567 eV Core-core repulsion = 20117.725472 eV Total energy + Delta-G solvation = -3377.011095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91031 -40.05347 -37.76083 -36.93893 -34.78003 -34.28692 -33.01707 -31.72889 -31.17327 -28.26895 -27.10835 -25.88757 -23.62975 -23.41636 -22.18399 -21.72854 -20.95441 -19.05717 -18.06727 -17.59090 -17.38315 -16.77533 -16.46282 -16.13957 -15.88950 -15.72252 -15.17954 -15.02585 -14.76685 -14.26135 -14.14733 -13.90516 -13.84881 -13.69420 -13.57648 -13.18242 -13.00645 -12.76566 -12.62510 -12.54969 -12.31408 -12.11412 -12.06019 -11.97890 -11.72186 -11.62693 -11.46622 -10.91698 -10.58960 -10.10601 -9.78350 -9.54095 -8.87924 -8.25905 -6.37482 0.48717 0.53775 1.34240 1.40688 1.49515 1.97168 2.31664 2.78095 2.91456 3.11585 3.52335 3.77876 3.92567 3.97338 4.11204 4.19349 4.28288 4.36401 4.40870 4.52976 4.57277 4.61333 4.68977 4.74347 4.81467 4.84888 4.90527 5.02419 5.10291 5.17940 5.24508 5.27067 5.34221 5.38848 5.51405 5.61516 5.65444 5.78019 5.79145 6.13099 6.17558 6.48328 6.55209 6.87456 7.15905 7.41449 8.10773 8.64150 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.003943 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.807434 B = 7099.974404 C = 7938.171209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.116 3.884 4 N -0.452 5.452 5 C -0.374 4.374 6 H 0.053 0.947 7 C 0.043 3.957 8 N -0.851 5.851 9 Si 0.950 3.050 10 H -0.290 1.290 11 H -0.273 1.273 12 H -0.262 1.262 13 C 0.446 3.554 14 O -0.609 6.609 15 C 0.109 3.891 16 H 0.123 0.877 17 O -0.539 6.539 18 C -0.113 4.113 19 C -0.066 4.066 20 C -0.092 4.092 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.133 4.133 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.381 0.619 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 4.645 15.648 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C -0.007 4.007 4 N -0.173 5.173 5 C -0.501 4.501 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.484 5.484 9 Si 0.775 3.225 10 H -0.216 1.216 11 H -0.197 1.197 12 H -0.186 1.186 13 C 0.234 3.766 14 O -0.493 6.493 15 C 0.047 3.953 16 H 0.140 0.860 17 O -0.344 6.344 18 C -0.151 4.151 19 C -0.103 4.103 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.151 4.151 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.433 4.750 15.494 16.565 hybrid contribution 1.492 -0.430 -0.935 1.812 sum -1.942 4.320 14.559 15.310 Atomic orbital electron populations 1.21638 0.95422 1.01107 1.01113 1.22172 0.94919 0.96981 1.04564 1.21728 0.81544 0.97599 0.99817 1.43506 1.05015 1.64831 1.03987 1.18824 1.38108 0.92220 1.00944 0.92953 1.26191 0.97194 0.95598 0.97476 1.69917 1.33042 1.00832 1.44640 0.85720 0.80291 0.77773 0.78765 1.21636 1.19745 1.18607 1.22422 0.88233 0.78091 0.87849 1.90500 1.16612 1.53893 1.88321 1.21955 0.98048 0.85739 0.89578 0.85967 1.86524 1.37235 1.17134 1.93525 1.21849 0.97854 1.01739 0.93702 1.20485 0.96795 1.02096 0.90907 1.20079 0.98102 0.94203 0.96807 1.21318 0.97236 1.00339 0.96253 1.21450 0.99025 0.95962 0.98185 1.21472 0.99691 0.93808 1.00324 1.21457 0.96564 1.00941 0.95590 1.21333 1.00331 0.94635 0.98843 0.92399 0.93367 0.93068 0.89382 0.92884 0.91523 0.93170 0.92130 0.77061 0.92373 0.92119 0.89892 0.89893 0.85536 0.84316 0.84017 0.84192 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.15 -6.12 5.74 30.59 0.18 -5.94 16 3 C 0.12 4.88 5.19 86.38 0.45 5.33 16 4 N -0.45 -22.84 2.35 -635.55 -1.50 -24.34 16 5 C -0.37 -21.14 8.28 84.04 0.70 -20.44 16 6 H 0.05 3.07 7.96 -2.91 -0.02 3.05 16 7 C 0.04 2.34 5.46 84.93 0.46 2.80 16 8 N -0.85 -45.82 10.40 21.66 0.23 -45.60 16 9 Si 0.95 44.31 29.63 68.60 2.03 46.34 16 10 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.45 21.60 7.14 87.66 0.63 22.22 16 14 O -0.61 -34.42 16.08 -3.08 -0.05 -34.47 16 15 C 0.11 3.87 2.55 29.85 0.08 3.94 16 16 H 0.12 3.88 6.32 -2.39 -0.02 3.87 16 17 O -0.54 -18.25 11.01 -148.98 -1.64 -19.89 16 18 C -0.11 -3.56 4.22 30.60 0.13 -3.43 16 19 C -0.07 -1.60 5.19 29.85 0.15 -1.45 16 20 C -0.09 -2.24 5.13 -19.87 -0.10 -2.34 16 21 C -0.13 -3.07 9.70 22.27 0.22 -2.86 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 24 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 25 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 4.32 5.18 -2.39 -0.01 4.30 16 30 H 0.05 2.28 6.09 -2.38 -0.01 2.26 16 31 H 0.07 2.38 5.97 -2.39 -0.01 2.37 16 32 H 0.05 2.14 8.05 -2.39 -0.02 2.13 16 33 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 34 H 0.38 12.07 9.04 -74.06 -0.67 11.40 16 35 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.08 1.94 7.90 -2.39 -0.02 1.92 16 39 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -67.39 353.00 3.89 -63.50 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.33 Total: 29.98 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 4.48 Total: -15.53 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.27 Total: -69.94 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.69 Total: -54.36 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.39 3.89 -63.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270933998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.402 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds