Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47272 * 2 1 4 4 N 1.46493 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.37094 * 120.00072 * 272.32287 * 4 3 2 6 6 H 1.07998 * 120.00666 * 139.32934 * 5 4 3 7 7 C 1.38956 * 119.99852 * 319.32846 * 5 4 3 8 8 N 1.31410 * 119.99969 * 341.54783 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 161.55054 * 7 5 4 10 10 H 1.48495 * 109.47200 * 59.99900 * 9 7 5 11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47017 * 299.99870 * 9 7 5 13 13 C 1.34775 * 120.00329 * 92.32172 * 4 3 2 14 14 O 1.21291 * 120.00429 * 183.50349 * 13 4 3 15 15 C 1.50707 * 119.99785 * 3.78085 * 13 4 3 16 16 H 1.08996 * 109.46826 * 312.52656 * 15 13 4 17 17 O 1.42896 * 109.47254 * 192.52221 * 15 13 4 18 18 C 1.53005 * 109.47033 * 72.52380 * 15 13 4 19 19 C 1.53001 * 109.47096 * 182.67584 * 18 15 13 20 20 C 1.50699 * 109.47166 * 179.97438 * 19 18 15 21 21 C 1.38233 * 119.99916 * 269.72940 * 20 19 18 22 22 C 1.38236 * 119.99628 * 179.76199 * 21 20 19 23 23 C 1.38242 * 120.00275 * 0.50911 * 22 21 20 24 24 C 1.38238 * 119.99485 * 359.74465 * 23 22 21 25 25 C 1.38229 * 120.00065 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47020 * 299.99750 * 1 2 3 28 28 H 1.08994 * 109.47260 * 60.00353 * 1 2 3 29 29 H 1.09003 * 109.47193 * 239.99774 * 2 1 3 30 30 H 1.09004 * 109.47175 * 119.99648 * 2 1 3 31 31 H 1.09003 * 109.47196 * 59.99776 * 3 2 1 32 32 H 1.09004 * 109.46733 * 299.99918 * 3 2 1 33 33 H 0.96995 * 120.00050 * 180.02562 * 8 7 5 34 34 H 0.96694 * 114.00225 * 300.00496 * 17 15 13 35 35 H 1.09001 * 109.46873 * 302.67799 * 18 15 13 36 36 H 1.09002 * 109.46864 * 62.67152 * 18 15 13 37 37 H 1.08997 * 109.47049 * 300.00143 * 19 18 15 38 38 H 1.08995 * 109.47013 * 59.99807 * 19 18 15 39 39 H 1.07997 * 119.99995 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.00218 * 180.22621 * 22 21 20 41 41 H 1.07998 * 119.99918 * 179.72133 * 23 22 21 42 42 H 1.08006 * 119.99341 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99661 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.3942 1.1854 6 1 5.0754 0.7806 1.2732 7 6 3.7484 2.1348 2.2746 8 7 2.9201 3.1388 2.0936 9 14 4.3308 1.7032 3.9962 10 1 5.8099 1.8178 4.0617 11 1 3.7187 2.6376 4.9747 12 1 3.9273 0.3114 4.3209 13 6 4.1784 1.4900 -1.1671 14 8 5.3896 1.4259 -1.1712 15 6 3.4268 1.6290 -2.4659 16 1 2.6016 0.9172 -2.4861 17 8 4.3101 1.3655 -3.5579 18 6 2.8764 3.0515 -2.5870 19 6 2.0573 3.1736 -3.8735 20 6 1.5147 4.5745 -3.9923 21 6 0.2788 4.8848 -3.4564 22 6 -0.2167 6.1710 -3.5611 23 6 0.5189 7.1444 -4.2111 24 6 1.7525 6.8327 -4.7517 25 6 2.2505 5.5480 -4.6418 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.6114 3.6560 2.8539 34 1 5.0695 1.9624 -3.6024 35 1 2.2402 3.2690 -1.7290 36 1 3.7042 3.7602 -2.6145 37 1 2.6935 2.9560 -4.7313 38 1 1.2297 2.4649 -3.8459 39 1 -0.2980 4.1232 -2.9528 40 1 -1.1806 6.4144 -3.1392 41 1 0.1297 8.1482 -4.2969 42 1 2.3270 7.5931 -5.2599 43 1 3.2141 5.3044 -5.0645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270933999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -75.768822 kcal Electronic energy + Delta-G solvation = -23768.931503 eV Core-core repulsion = 20392.489960 eV Total energy + Delta-G solvation = -3376.441543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47826 -38.87716 -36.32539 -35.19526 -33.59985 -32.75269 -31.30858 -30.82468 -29.96725 -26.77298 -25.66528 -24.26354 -22.51245 -22.40693 -20.99256 -20.57782 -19.34344 -17.04519 -16.68922 -16.53512 -15.92106 -15.35574 -15.13901 -14.77332 -14.58677 -14.08431 -13.73958 -13.68065 -13.35216 -13.29370 -12.94067 -12.63525 -12.59126 -12.42767 -11.80246 -11.62119 -11.51626 -11.38032 -11.11738 -11.07079 -10.95734 -10.93265 -10.69335 -10.53030 -10.32201 -10.26640 -10.02626 -9.82553 -8.96036 -8.85888 -8.66942 -8.19567 -7.43129 -6.32763 -4.02675 1.42496 1.46314 3.18308 3.24178 3.27782 3.74832 3.89122 4.13825 4.73493 4.82089 4.90070 4.93724 5.00318 5.05535 5.16971 5.29559 5.46771 5.51922 5.56513 5.60388 5.65549 5.68455 5.78699 5.81977 5.96439 6.02664 6.08441 6.11781 6.20216 6.32415 6.40880 6.44839 6.52193 6.54581 6.55753 6.62422 6.76248 6.91125 7.07709 7.23552 7.57695 8.00680 8.28656 8.49322 9.15871 9.36784 9.96298 10.70421 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.004646 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.777178 B = 6025.210584 C = 6336.677177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.093 3.907 4 N -0.435 5.435 5 C -0.311 4.311 6 H 0.087 0.913 7 C 0.041 3.959 8 N -0.870 5.870 9 Si 0.917 3.083 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.435 3.565 14 O -0.577 6.577 15 C 0.094 3.906 16 H 0.106 0.894 17 O -0.550 6.550 18 C -0.139 4.139 19 C -0.076 4.076 20 C -0.073 4.073 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.121 4.121 25 C -0.118 4.118 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.378 0.622 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 3.930 -9.897 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.031 4.031 4 N -0.155 5.155 5 C -0.439 4.439 6 H 0.105 0.895 7 C -0.164 4.164 8 N -0.507 5.507 9 Si 0.744 3.256 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.222 3.778 14 O -0.461 6.461 15 C 0.032 3.968 16 H 0.124 0.876 17 O -0.355 6.355 18 C -0.177 4.177 19 C -0.114 4.114 20 C -0.073 4.073 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.811 3.576 -9.886 13.717 hybrid contribution 0.476 0.418 1.158 1.320 sum -8.335 3.994 -8.727 12.712 Atomic orbital electron populations 1.21684 0.96333 1.00765 1.01492 1.21946 0.94807 0.99237 1.01869 1.21832 0.82366 0.94825 1.04046 1.43425 1.04408 1.63129 1.04502 1.19329 1.11530 1.26125 0.86938 0.89515 1.25385 0.97008 0.93659 1.00304 1.69867 1.33303 1.15916 1.31664 0.86151 0.79313 0.78393 0.81772 1.19753 1.20967 1.19868 1.21158 0.88514 0.81971 0.86127 1.90519 1.14193 1.54441 1.86924 1.21826 0.92137 0.96655 0.86229 0.87606 1.86440 1.39626 1.61507 1.47922 1.22259 1.00672 0.96585 0.98198 1.20591 0.99657 0.92273 0.98854 1.19993 0.94332 0.96109 0.96888 1.21102 0.95846 0.96807 0.99628 1.21129 0.99907 0.93384 0.99255 1.21096 0.95359 0.99161 0.99290 1.21112 0.96121 0.96511 1.00126 1.21077 0.99714 0.93089 0.99740 0.93394 0.92724 0.93203 0.93264 0.91521 0.87320 0.92637 0.92201 0.77422 0.89317 0.91252 0.90366 0.91010 0.85989 0.86279 0.86488 0.86376 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.51 6.20 -26.73 -0.17 -2.68 16 3 C 0.09 1.94 4.48 -4.04 -0.02 1.92 16 4 N -0.44 -10.78 2.50 -114.81 -0.29 -11.07 16 5 C -0.31 -8.55 8.87 -14.93 -0.13 -8.68 16 6 H 0.09 2.52 7.78 -52.49 -0.41 2.11 16 7 C 0.04 1.07 5.03 -17.47 -0.09 0.98 16 8 N -0.87 -22.97 11.47 55.50 0.64 -22.33 16 9 Si 0.92 20.51 29.59 -169.99 -5.03 15.48 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 13 C 0.43 10.58 6.94 -10.98 -0.08 10.51 16 14 O -0.58 -16.21 16.20 -14.03 -0.23 -16.44 16 15 C 0.09 1.76 2.56 -27.88 -0.07 1.69 16 16 H 0.11 1.85 6.87 -51.93 -0.36 1.50 16 17 O -0.55 -10.01 12.50 -54.81 -0.68 -10.70 16 18 C -0.14 -2.30 4.52 -26.73 -0.12 -2.42 16 19 C -0.08 -1.02 5.22 -27.88 -0.15 -1.17 16 20 C -0.07 -0.98 5.13 -104.62 -0.54 -1.51 16 21 C -0.12 -1.48 9.70 -39.58 -0.38 -1.86 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.12 -1.49 9.70 -39.59 -0.38 -1.88 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.86 7.63 -51.93 -0.40 0.46 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.11 2.52 5.62 -51.93 -0.29 2.23 16 32 H 0.06 1.03 4.38 -51.93 -0.23 0.80 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.38 6.24 8.71 45.56 0.40 6.64 16 35 H 0.09 1.60 5.90 -51.93 -0.31 1.29 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -31.33 353.96 -8.98 -40.31 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.77 Total: 11.65 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.95 Total: -12.24 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.35 Total: -33.40 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.91 Total: -27.13 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.33 -8.98 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270933999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.458 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds