Wall clock time and date at job start Tue Mar 31 2020 06:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47272 * 2 1 4 4 N 1.46493 * 109.47260 * 180.02562 * 3 2 1 5 5 C 1.37094 * 120.00072 * 272.32287 * 4 3 2 6 6 H 1.07998 * 120.00666 * 139.32934 * 5 4 3 7 7 C 1.38956 * 119.99852 * 319.32846 * 5 4 3 8 8 N 1.31410 * 119.99969 * 341.54783 * 7 5 4 9 9 Si 1.86801 * 119.99962 * 161.55054 * 7 5 4 10 10 H 1.48495 * 109.47200 * 59.99900 * 9 7 5 11 11 H 1.48500 * 109.47146 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47017 * 299.99870 * 9 7 5 13 13 C 1.34775 * 120.00329 * 92.32172 * 4 3 2 14 14 O 1.21291 * 120.00429 * 183.50349 * 13 4 3 15 15 C 1.50707 * 119.99785 * 3.78085 * 13 4 3 16 16 H 1.08996 * 109.46826 * 312.52656 * 15 13 4 17 17 O 1.42896 * 109.47254 * 192.52221 * 15 13 4 18 18 C 1.53005 * 109.47033 * 72.52380 * 15 13 4 19 19 C 1.53001 * 109.47096 * 182.67584 * 18 15 13 20 20 C 1.50699 * 109.47166 * 179.97438 * 19 18 15 21 21 C 1.38233 * 119.99916 * 269.72940 * 20 19 18 22 22 C 1.38236 * 119.99628 * 179.76199 * 21 20 19 23 23 C 1.38242 * 120.00275 * 0.50911 * 22 21 20 24 24 C 1.38238 * 119.99485 * 359.74465 * 23 22 21 25 25 C 1.38229 * 120.00065 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.46915 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47020 * 299.99750 * 1 2 3 28 28 H 1.08994 * 109.47260 * 60.00353 * 1 2 3 29 29 H 1.09003 * 109.47193 * 239.99774 * 2 1 3 30 30 H 1.09004 * 109.47175 * 119.99648 * 2 1 3 31 31 H 1.09003 * 109.47196 * 59.99776 * 3 2 1 32 32 H 1.09004 * 109.46733 * 299.99918 * 3 2 1 33 33 H 0.96995 * 120.00050 * 180.02562 * 8 7 5 34 34 H 0.96694 * 114.00225 * 300.00496 * 17 15 13 35 35 H 1.09001 * 109.46873 * 302.67799 * 18 15 13 36 36 H 1.09002 * 109.46864 * 62.67152 * 18 15 13 37 37 H 1.08997 * 109.47049 * 300.00143 * 19 18 15 38 38 H 1.08995 * 109.47013 * 59.99807 * 19 18 15 39 39 H 1.07997 * 119.99995 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.00218 * 180.22621 * 22 21 20 41 41 H 1.07998 * 119.99918 * 179.72133 * 23 22 21 42 42 H 1.08006 * 119.99341 * 179.97438 * 24 23 22 43 43 H 1.08006 * 119.99661 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.3942 1.1854 6 1 5.0754 0.7806 1.2732 7 6 3.7484 2.1348 2.2746 8 7 2.9201 3.1388 2.0936 9 14 4.3308 1.7032 3.9962 10 1 5.8099 1.8178 4.0617 11 1 3.7187 2.6376 4.9747 12 1 3.9273 0.3114 4.3209 13 6 4.1784 1.4900 -1.1671 14 8 5.3896 1.4259 -1.1712 15 6 3.4268 1.6290 -2.4659 16 1 2.6016 0.9172 -2.4861 17 8 4.3101 1.3655 -3.5579 18 6 2.8764 3.0515 -2.5870 19 6 2.0573 3.1736 -3.8735 20 6 1.5147 4.5745 -3.9923 21 6 0.2788 4.8848 -3.4564 22 6 -0.2167 6.1710 -3.5611 23 6 0.5189 7.1444 -4.2111 24 6 1.7525 6.8327 -4.7517 25 6 2.2505 5.5480 -4.6418 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.6114 3.6560 2.8539 34 1 5.0695 1.9624 -3.6024 35 1 2.2402 3.2690 -1.7290 36 1 3.7042 3.7602 -2.6145 37 1 2.6935 2.9560 -4.7313 38 1 1.2297 2.4649 -3.8459 39 1 -0.2980 4.1232 -2.9528 40 1 -1.1806 6.4144 -3.1392 41 1 0.1297 8.1482 -4.2969 42 1 2.3270 7.5931 -5.2599 43 1 3.2141 5.3044 -5.0645 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270933999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:18 Heat of formation + Delta-G solvation = -93.483139 kcal Electronic energy + Delta-G solvation = -23769.699654 eV Core-core repulsion = 20392.489960 eV Total energy + Delta-G solvation = -3377.209694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02142 -40.03419 -37.91501 -37.00659 -34.81846 -34.47154 -33.05563 -31.70693 -31.24944 -28.29450 -27.19613 -25.95383 -23.75005 -23.40061 -22.38114 -21.72123 -21.09090 -18.91383 -18.34725 -17.57981 -17.53367 -16.78886 -16.59621 -16.08365 -15.83278 -15.55132 -15.37804 -15.31272 -14.82061 -14.25186 -14.06247 -13.97090 -13.89481 -13.69481 -13.40328 -13.22453 -13.01194 -12.90720 -12.66798 -12.59107 -12.24989 -12.14534 -12.07810 -11.96188 -11.92411 -11.65667 -11.50070 -11.37093 -10.89880 -10.19049 -9.75873 -9.50663 -9.39807 -8.33624 -6.12129 0.50345 0.56276 1.37033 1.39673 1.49219 1.94003 2.27778 2.89534 2.97998 3.02556 3.41810 3.75098 3.89608 3.92860 4.10758 4.18337 4.21225 4.28583 4.35054 4.38750 4.44611 4.50688 4.58585 4.69354 4.71217 4.79318 4.86130 4.98580 5.06109 5.15142 5.17755 5.25336 5.28392 5.33612 5.40902 5.46219 5.60305 5.63469 5.67650 5.80370 6.19549 6.20772 6.47862 6.64464 7.15278 7.42871 8.01142 8.67221 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.004646 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.777178 B = 6025.210584 C = 6336.677177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.094 3.906 4 N -0.443 5.443 5 C -0.347 4.347 6 H 0.057 0.943 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.265 1.265 13 C 0.417 3.583 14 O -0.628 6.628 15 C 0.111 3.889 16 H 0.126 0.874 17 O -0.550 6.550 18 C -0.125 4.125 19 C -0.064 4.064 20 C -0.092 4.092 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.274 0.726 34 H 0.385 0.615 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 4.464 -10.445 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.173 4.173 3 C -0.029 4.029 4 N -0.162 5.162 5 C -0.475 4.475 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.521 5.521 9 Si 0.800 3.200 10 H -0.205 1.205 11 H -0.194 1.194 12 H -0.189 1.189 13 C 0.206 3.794 14 O -0.516 6.516 15 C 0.048 3.952 16 H 0.143 0.857 17 O -0.355 6.355 18 C -0.163 4.163 19 C -0.101 4.101 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.152 4.152 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.948 4.114 -10.441 15.678 hybrid contribution 1.147 0.323 1.316 1.775 sum -9.802 4.437 -9.125 14.107 Atomic orbital electron populations 1.21637 0.92992 1.02465 1.02389 1.21871 0.97615 0.96773 1.01006 1.21951 0.80055 0.96871 1.03997 1.43690 1.05984 1.62485 1.04062 1.19257 1.11960 1.27254 0.89035 0.92509 1.26055 0.96868 0.93119 1.03202 1.69930 1.33373 1.15933 1.32816 0.85263 0.78331 0.78787 0.77588 1.20500 1.19421 1.18941 1.22210 0.88413 0.80847 0.87949 1.90468 1.16496 1.56618 1.87984 1.21739 0.91741 0.98525 0.83178 0.85704 1.86418 1.39979 1.61989 1.47135 1.22098 1.00203 0.94450 0.99576 1.20474 0.99627 0.93162 0.96862 1.20046 0.95008 0.96065 0.98065 1.21339 0.95925 0.97728 0.99840 1.21455 1.00854 0.93125 0.99138 1.21468 0.95135 1.00279 0.98422 1.21434 0.96575 0.96612 1.00058 1.21312 1.00157 0.93676 1.00036 0.91314 0.93045 0.91111 0.92695 0.93873 0.89580 0.90305 0.91658 0.76635 0.90757 0.92784 0.89803 0.89466 0.85106 0.84296 0.84106 0.84356 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.13 -4.70 6.20 30.60 0.19 -4.51 16 3 C 0.09 3.91 4.48 86.38 0.39 4.30 16 4 N -0.44 -22.57 2.50 -635.53 -1.59 -24.16 16 5 C -0.35 -19.78 8.87 84.04 0.75 -19.03 16 6 H 0.06 3.50 7.78 -2.91 -0.02 3.48 16 7 C 0.01 0.58 5.03 84.93 0.43 1.01 16 8 N -0.88 -46.91 11.47 21.66 0.25 -46.66 16 9 Si 0.98 42.42 29.59 68.60 2.03 44.45 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.42 20.82 6.94 87.66 0.61 21.43 16 14 O -0.63 -36.81 16.20 15.65 0.25 -36.56 16 15 C 0.11 4.09 2.56 29.85 0.08 4.17 16 16 H 0.13 4.14 6.87 -2.39 -0.02 4.13 16 17 O -0.55 -19.66 12.50 -130.26 -1.63 -21.29 16 18 C -0.13 -4.07 4.52 30.60 0.14 -3.93 16 19 C -0.06 -1.61 5.22 29.85 0.16 -1.45 16 20 C -0.09 -2.32 5.13 -19.87 -0.10 -2.42 16 21 C -0.13 -3.10 9.70 22.27 0.22 -2.88 16 22 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 23 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 24 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 25 C -0.13 -3.21 9.70 22.27 0.22 -3.00 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.84 7.63 -2.39 -0.02 1.83 16 30 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.09 4.02 5.62 -2.39 -0.01 4.00 16 32 H 0.08 2.85 4.38 -2.38 -0.01 2.84 16 33 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.38 12.74 8.71 -74.06 -0.64 12.10 16 35 H 0.07 2.64 5.90 -2.39 -0.01 2.63 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.01 7.70 -2.39 -0.02 2.00 16 38 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 39 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -69.67 353.96 4.12 -65.55 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.36 Total: 35.34 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.44 Total: -16.67 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.34 Total: -70.82 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -1.37 Total: -57.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -69.67 4.12 -65.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270933999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.930 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds