Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 N 1.46505 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.36896 * 119.99875 * 269.99816 * 4 3 2 6 6 H 1.08001 * 120.00700 * 144.44813 * 5 4 3 7 7 C 1.39032 * 120.00291 * 324.45029 * 5 4 3 8 8 N 1.31374 * 120.00463 * 155.54502 * 7 5 4 9 9 Si 1.86801 * 119.99484 * 335.54444 * 7 5 4 10 10 H 1.48500 * 109.47479 * 95.32848 * 9 7 5 11 11 H 1.48504 * 109.47236 * 215.32637 * 9 7 5 12 12 H 1.48500 * 109.47217 * 335.32455 * 9 7 5 13 13 C 1.34771 * 119.99651 * 89.99352 * 4 3 2 14 14 O 1.21618 * 120.00481 * 5.50510 * 13 4 3 15 15 C 1.47437 * 119.99473 * 185.49979 * 13 4 3 16 16 C 1.39767 * 120.19722 * 321.56651 * 15 13 4 17 17 C 1.37774 * 119.90274 * 179.97438 * 16 15 13 18 18 C 1.38565 * 120.30187 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.79751 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47211 * 299.99901 * 19 18 17 21 21 C 1.53001 * 109.47033 * 59.99921 * 19 18 17 22 22 C 1.38070 * 120.40199 * 0.04167 * 18 17 16 23 23 C 1.38681 * 120.09452 * 359.95770 * 22 18 17 24 24 O 1.35655 * 120.15525 * 180.29938 * 23 22 18 25 25 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47456 * 300.01112 * 1 2 3 27 27 H 1.08998 * 109.46856 * 60.00348 * 1 2 3 28 28 H 1.08994 * 109.47581 * 239.99300 * 2 1 3 29 29 H 1.09011 * 109.46655 * 119.99413 * 2 1 3 30 30 H 1.08996 * 109.47405 * 59.99726 * 3 2 1 31 31 H 1.08998 * 109.46894 * 299.99628 * 3 2 1 32 32 H 0.96999 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.05123 * 0.02562 * 16 15 13 34 34 H 1.07996 * 119.84928 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47500 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47106 * 60.00171 * 20 19 18 37 37 H 1.08996 * 109.47524 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47410 * 300.00553 * 20 19 18 39 39 H 1.08997 * 109.47101 * 179.97438 * 21 19 18 40 40 H 1.09005 * 109.47298 * 299.99838 * 21 19 18 41 41 H 1.08999 * 109.46979 * 59.99998 * 21 19 18 42 42 H 1.08002 * 119.95170 * 180.02562 * 22 18 17 43 43 H 0.96701 * 114.00146 * 269.72198 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1890 1.4427 1.1865 6 1 5.1180 0.8989 1.2743 7 6 3.6878 2.1429 2.2780 8 7 4.0268 1.7896 3.4971 9 14 2.5323 3.5862 2.0110 10 1 1.1262 3.1217 2.1220 11 1 2.7928 4.6256 3.0391 12 1 2.7594 4.1587 0.6598 13 6 4.1794 1.4421 -1.1663 14 8 3.5759 1.5429 -2.2174 15 6 5.6486 1.3197 -1.1685 16 6 6.4092 1.9637 -0.1886 17 6 7.7818 1.8448 -0.1961 18 6 8.4127 1.0887 -1.1710 19 6 9.9147 0.9658 -1.1681 20 6 10.5403 2.3547 -1.3111 21 6 10.3721 0.3334 0.1478 22 6 7.6736 0.4475 -2.1452 23 6 6.2911 0.5560 -2.1533 24 8 5.5633 -0.0784 -3.1062 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6774 2.2784 4.2586 33 1 5.9217 2.5530 0.5739 34 1 8.3686 2.3424 0.5617 35 1 10.2296 0.3384 -2.0019 36 1 10.2255 2.9826 -0.4775 37 1 11.6266 2.2660 -1.3086 38 1 10.2144 2.8053 -2.2485 39 1 11.4584 0.2441 0.1497 40 1 10.0574 0.9613 0.9815 41 1 9.9264 -0.6560 0.2496 42 1 8.1729 -0.1403 -2.9013 43 1 5.4076 0.4514 -3.9000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271318147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = -58.321760 kcal Electronic energy + Delta-G solvation = -24049.256584 eV Core-core repulsion = 20673.571602 eV Total energy + Delta-G solvation = -3375.684982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89775 -38.31494 -36.90119 -35.19628 -34.49698 -32.97568 -31.70299 -30.05446 -28.93521 -27.08424 -26.02858 -25.05462 -23.21256 -22.13592 -21.22214 -20.15033 -19.26763 -17.80189 -16.95456 -16.30811 -15.82027 -15.36309 -14.78197 -14.70659 -14.21340 -14.15703 -13.79259 -13.65036 -13.33676 -13.22574 -13.02114 -12.70002 -12.46226 -12.22158 -12.02113 -11.68503 -11.59208 -11.46524 -11.45883 -11.02412 -10.97670 -10.91376 -10.83180 -10.58583 -10.44793 -10.10095 -9.94383 -9.77352 -9.21459 -8.62431 -8.27193 -8.02281 -7.81608 -6.56629 -4.08511 1.51677 1.85423 3.00278 3.17016 3.25374 3.65835 4.05733 4.18511 4.38943 4.62124 4.90516 4.95481 5.01141 5.26870 5.44865 5.53746 5.58551 5.62891 5.66065 5.66858 5.75300 5.83133 5.88636 5.93671 6.03172 6.06416 6.11339 6.26693 6.30233 6.32798 6.37381 6.40741 6.44057 6.56436 6.76325 6.84079 6.92014 7.00626 7.04871 7.28661 7.37910 7.99766 8.17528 8.21575 8.86974 9.29808 9.63978 10.52202 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.005677 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.137189 B = 4930.627681 C = 5968.961195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.103 3.897 4 N -0.454 5.454 5 C -0.350 4.350 6 H 0.112 0.888 7 C 0.069 3.931 8 N -0.849 5.849 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.523 3.477 14 O -0.593 6.593 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.143 4.143 18 C -0.057 4.057 19 C -0.055 4.055 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.165 4.165 23 C 0.144 3.856 24 O -0.490 6.490 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.276 0.724 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.375 0.110 -5.966 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.172 5.172 5 C -0.477 4.477 6 H 0.129 0.871 7 C -0.139 4.139 8 N -0.483 5.483 9 Si 0.696 3.304 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.185 1.185 13 C 0.313 3.687 14 O -0.479 6.479 15 C -0.132 4.132 16 C -0.065 4.065 17 C -0.161 4.161 18 C -0.058 4.058 19 C -0.073 4.073 20 C -0.200 4.200 21 C -0.202 4.202 22 C -0.183 4.183 23 C 0.098 3.902 24 O -0.300 6.300 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.175 0.825 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.140 0.860 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 7.033 -0.274 -5.828 9.139 hybrid contribution -0.654 0.987 -0.079 1.186 sum 6.380 0.713 -5.908 8.724 Atomic orbital electron populations 1.21703 0.96307 1.01112 1.01336 1.21762 0.94793 0.97787 1.02641 1.21665 0.82206 0.96884 1.01246 1.43584 1.04072 1.63941 1.05622 1.19227 1.09624 1.32354 0.86493 0.87093 1.25268 0.96820 0.97267 0.94580 1.69790 1.42995 1.37455 0.98059 0.87067 0.80876 0.83238 0.79183 1.19917 1.21343 1.18459 1.17948 0.86423 0.80474 0.83819 1.90598 1.69853 1.55644 1.31822 1.20356 0.94600 1.00411 0.97817 1.21970 0.92845 0.96036 0.95622 1.20923 0.94544 1.01366 0.99243 1.19729 0.94742 0.96601 0.94689 1.20109 0.91064 0.97341 0.98806 1.21853 0.99829 0.96129 1.02237 1.21859 1.00360 1.01168 0.96777 1.21039 0.92527 1.03519 1.01252 1.18445 0.88880 0.92466 0.90395 1.84666 1.73794 1.42342 1.29212 0.92966 0.93024 0.93027 0.92039 0.91166 0.91680 0.91166 0.91352 0.82467 0.86108 0.90831 0.92205 0.92713 0.92628 0.92741 0.92097 0.92452 0.86036 0.75387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.65 6.26 -26.73 -0.17 -2.82 16 3 C 0.10 2.32 4.29 -4.04 -0.02 2.30 16 4 N -0.45 -11.11 2.20 -116.03 -0.26 -11.36 16 5 C -0.35 -8.91 6.98 -15.00 -0.10 -9.01 16 6 H 0.11 2.98 6.18 -52.49 -0.32 2.66 16 7 C 0.07 1.76 5.28 -17.45 -0.09 1.66 16 8 N -0.85 -22.50 13.95 55.50 0.77 -21.73 16 9 Si 0.87 19.92 25.11 -169.99 -4.27 15.65 16 10 H -0.27 -6.04 6.64 56.52 0.38 -5.66 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.52 12.75 7.16 -12.52 -0.09 12.66 16 14 O -0.59 -15.15 15.64 -11.18 -0.17 -15.32 16 15 C -0.13 -2.78 5.39 -104.84 -0.57 -3.35 16 16 C -0.05 -0.93 7.64 -39.18 -0.30 -1.23 16 17 C -0.14 -2.38 8.68 -39.63 -0.34 -2.73 16 18 C -0.06 -0.87 4.79 -104.56 -0.50 -1.37 16 19 C -0.05 -0.64 3.09 -91.77 -0.28 -0.93 16 20 C -0.14 -1.49 9.00 37.16 0.33 -1.15 16 21 C -0.14 -1.62 9.00 37.16 0.33 -1.28 16 22 C -0.16 -2.68 9.59 -39.48 -0.38 -3.06 16 23 C 0.14 2.78 6.68 -38.68 -0.26 2.53 16 24 O -0.49 -9.21 12.24 -35.11 -0.43 -9.64 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.07 1.48 3.16 -51.93 -0.16 1.32 16 31 H 0.07 1.58 7.35 -51.93 -0.38 1.19 16 32 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.16 3.39 5.93 -52.49 -0.31 3.08 16 34 H 0.12 1.77 7.07 -52.49 -0.37 1.40 16 35 H 0.07 0.79 7.86 -51.93 -0.41 0.39 16 36 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.71 7.37 -51.93 -0.38 0.32 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.12 1.69 7.93 -52.49 -0.42 1.27 16 43 H 0.39 5.84 9.06 45.56 0.41 6.26 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.34 344.60 -6.92 -36.25 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.70 Total: 10.75 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.06 Total: -9.79 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.52 Total: -33.09 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.60 Total: -24.97 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.27 Total: 15.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.34 -6.92 -36.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271318147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.067 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds