Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47275 * 2 1 4 4 N 1.46505 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.36896 * 119.99875 * 269.99816 * 4 3 2 6 6 H 1.08001 * 120.00700 * 144.44813 * 5 4 3 7 7 C 1.39032 * 120.00291 * 324.45029 * 5 4 3 8 8 N 1.31374 * 120.00463 * 155.54502 * 7 5 4 9 9 Si 1.86801 * 119.99484 * 335.54444 * 7 5 4 10 10 H 1.48500 * 109.47479 * 95.32848 * 9 7 5 11 11 H 1.48504 * 109.47236 * 215.32637 * 9 7 5 12 12 H 1.48500 * 109.47217 * 335.32455 * 9 7 5 13 13 C 1.34771 * 119.99651 * 89.99352 * 4 3 2 14 14 O 1.21618 * 120.00481 * 5.50510 * 13 4 3 15 15 C 1.47437 * 119.99473 * 185.49979 * 13 4 3 16 16 C 1.39767 * 120.19722 * 321.56651 * 15 13 4 17 17 C 1.37774 * 119.90274 * 179.97438 * 16 15 13 18 18 C 1.38565 * 120.30187 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.79751 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47211 * 299.99901 * 19 18 17 21 21 C 1.53001 * 109.47033 * 59.99921 * 19 18 17 22 22 C 1.38070 * 120.40199 * 0.04167 * 18 17 16 23 23 C 1.38681 * 120.09452 * 359.95770 * 22 18 17 24 24 O 1.35655 * 120.15525 * 180.29938 * 23 22 18 25 25 H 1.09001 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47456 * 300.01112 * 1 2 3 27 27 H 1.08998 * 109.46856 * 60.00348 * 1 2 3 28 28 H 1.08994 * 109.47581 * 239.99300 * 2 1 3 29 29 H 1.09011 * 109.46655 * 119.99413 * 2 1 3 30 30 H 1.08996 * 109.47405 * 59.99726 * 3 2 1 31 31 H 1.08998 * 109.46894 * 299.99628 * 3 2 1 32 32 H 0.96999 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.07997 * 120.05123 * 0.02562 * 16 15 13 34 34 H 1.07996 * 119.84928 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.47500 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47106 * 60.00171 * 20 19 18 37 37 H 1.08996 * 109.47524 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47410 * 300.00553 * 20 19 18 39 39 H 1.08997 * 109.47101 * 179.97438 * 21 19 18 40 40 H 1.09005 * 109.47298 * 299.99838 * 21 19 18 41 41 H 1.08999 * 109.46979 * 59.99998 * 21 19 18 42 42 H 1.08002 * 119.95170 * 180.02562 * 22 18 17 43 43 H 0.96701 * 114.00146 * 269.72198 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1890 1.4427 1.1865 6 1 5.1180 0.8989 1.2743 7 6 3.6878 2.1429 2.2780 8 7 4.0268 1.7896 3.4971 9 14 2.5323 3.5862 2.0110 10 1 1.1262 3.1217 2.1220 11 1 2.7928 4.6256 3.0391 12 1 2.7594 4.1587 0.6598 13 6 4.1794 1.4421 -1.1663 14 8 3.5759 1.5429 -2.2174 15 6 5.6486 1.3197 -1.1685 16 6 6.4092 1.9637 -0.1886 17 6 7.7818 1.8448 -0.1961 18 6 8.4127 1.0887 -1.1710 19 6 9.9147 0.9658 -1.1681 20 6 10.5403 2.3547 -1.3111 21 6 10.3721 0.3334 0.1478 22 6 7.6736 0.4475 -2.1452 23 6 6.2911 0.5560 -2.1533 24 8 5.5633 -0.0784 -3.1062 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6774 2.2784 4.2586 33 1 5.9217 2.5530 0.5739 34 1 8.3686 2.3424 0.5617 35 1 10.2296 0.3384 -2.0019 36 1 10.2255 2.9826 -0.4775 37 1 11.6266 2.2660 -1.3086 38 1 10.2144 2.8053 -2.2485 39 1 11.4584 0.2441 0.1497 40 1 10.0574 0.9613 0.9815 41 1 9.9264 -0.6560 0.2496 42 1 8.1729 -0.1403 -2.9013 43 1 5.4076 0.4514 -3.9000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271318147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = -75.198808 kcal Electronic energy + Delta-G solvation = -24049.988428 eV Core-core repulsion = 20673.571602 eV Total energy + Delta-G solvation = -3376.416826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49181 -39.94232 -38.26799 -37.05614 -35.76480 -34.68343 -33.54527 -31.43632 -30.36799 -27.91241 -27.67132 -26.92399 -24.59119 -23.57881 -22.80388 -21.46825 -20.96636 -19.56363 -18.40005 -18.10674 -17.41250 -16.80428 -16.47622 -16.24363 -15.82833 -15.72817 -15.36176 -14.84682 -14.75578 -14.55002 -14.39227 -14.27868 -14.17112 -13.51154 -13.35820 -13.19750 -13.12855 -12.84937 -12.65889 -12.60009 -12.52136 -12.16334 -12.13815 -11.95431 -11.87683 -11.61913 -11.54601 -11.36940 -11.07105 -10.48521 -9.83206 -9.65647 -9.43796 -8.54667 -6.08897 0.04248 0.43455 1.15338 1.28731 1.39263 1.92576 2.14552 2.50463 2.69844 3.06586 3.30633 3.78233 3.89897 3.96141 4.08959 4.12920 4.23303 4.32792 4.37070 4.37738 4.50679 4.56212 4.60344 4.64907 4.88468 4.88691 4.90236 5.04967 5.06032 5.06254 5.11032 5.17349 5.21339 5.25484 5.33858 5.45062 5.45929 5.49341 5.56434 5.69322 5.94878 6.03382 6.22893 6.83390 6.90075 7.35464 7.72098 8.57670 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.005677 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.137189 B = 4930.627681 C = 5968.961195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.096 3.904 4 N -0.465 5.465 5 C -0.345 4.345 6 H 0.089 0.911 7 C 0.039 3.961 8 N -0.882 5.882 9 Si 0.915 3.085 10 H -0.256 1.256 11 H -0.278 1.278 12 H -0.274 1.274 13 C 0.515 3.485 14 O -0.613 6.613 15 C -0.169 4.169 16 C -0.058 4.058 17 C -0.141 4.141 18 C -0.040 4.040 19 C -0.052 4.052 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.158 4.158 23 C 0.137 3.863 24 O -0.502 6.502 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.282 0.718 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.153 0.847 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 0.011 -6.701 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.026 4.026 4 N -0.184 5.184 5 C -0.472 4.472 6 H 0.106 0.894 7 C -0.166 4.166 8 N -0.518 5.518 9 Si 0.741 3.259 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.307 3.693 14 O -0.501 6.501 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.159 4.159 18 C -0.041 4.041 19 C -0.071 4.071 20 C -0.199 4.199 21 C -0.202 4.202 22 C -0.177 4.177 23 C 0.091 3.909 24 O -0.314 6.314 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.171 0.829 43 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 8.367 -0.371 -6.562 10.640 hybrid contribution -0.936 0.978 0.071 1.356 sum 7.431 0.607 -6.491 9.886 Atomic orbital electron populations 1.21671 0.92926 1.02966 1.02180 1.21686 0.97710 0.95745 1.01148 1.21806 0.81401 0.98452 1.00943 1.43722 1.04882 1.64360 1.05401 1.19004 1.09166 1.32097 0.86921 0.89373 1.25671 0.98160 0.98606 0.94196 1.69828 1.44656 1.38625 0.98690 0.86334 0.80298 0.80935 0.78354 1.18235 1.20465 1.19862 1.18491 0.87836 0.79541 0.83438 1.90548 1.70760 1.56510 1.32253 1.20366 0.93250 1.03441 1.00178 1.21755 0.94319 0.96500 0.95143 1.21118 0.93211 1.01425 1.00101 1.20185 0.96978 0.94092 0.92826 1.20223 0.88070 0.98829 0.99954 1.21853 1.01228 0.94849 1.01996 1.21871 1.01992 1.00305 0.96031 1.21350 0.91144 1.03198 1.01977 1.18653 0.90099 0.92220 0.89945 1.84614 1.74129 1.42855 1.29812 0.90662 0.92430 0.91906 0.93310 0.92776 0.91840 0.91342 0.90821 0.84968 0.84163 0.88869 0.92704 0.90382 0.92723 0.90201 0.92847 0.93439 0.82910 0.73769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.91 71.98 0.71 -3.63 16 2 C -0.12 -5.06 6.26 30.59 0.19 -4.86 16 3 C 0.10 4.42 4.29 86.38 0.37 4.79 16 4 N -0.46 -23.55 2.20 -639.25 -1.41 -24.95 16 5 C -0.34 -18.23 6.98 84.09 0.59 -17.65 16 6 H 0.09 5.00 6.18 -2.91 -0.02 4.98 16 7 C 0.04 2.05 5.28 84.95 0.45 2.50 16 8 N -0.88 -47.69 13.95 21.68 0.30 -47.39 16 9 Si 0.91 41.40 25.11 68.60 1.72 43.12 16 10 H -0.26 -10.88 6.64 99.48 0.66 -10.22 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.52 26.05 7.16 86.67 0.62 26.67 16 14 O -0.61 -32.21 15.64 11.64 0.18 -32.03 16 15 C -0.17 -7.55 5.39 -20.01 -0.11 -7.66 16 16 C -0.06 -2.42 7.64 22.53 0.17 -2.25 16 17 C -0.14 -4.62 8.68 22.24 0.19 -4.43 16 18 C -0.04 -1.14 4.79 -19.83 -0.09 -1.23 16 19 C -0.05 -1.05 3.09 -11.54 -0.04 -1.09 16 20 C -0.14 -2.45 9.00 71.98 0.65 -1.80 16 21 C -0.14 -2.80 9.00 71.98 0.65 -2.15 16 22 C -0.16 -4.83 9.59 22.34 0.21 -4.62 16 23 C 0.14 5.27 6.68 22.85 0.15 5.42 16 24 O -0.50 -18.81 12.24 -73.98 -0.91 -19.71 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.06 2.90 3.16 -2.39 -0.01 2.89 16 31 H 0.07 3.12 7.35 -2.39 -0.02 3.10 16 32 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.13 6.06 5.93 -2.91 -0.02 6.05 16 34 H 0.14 3.98 7.07 -2.91 -0.02 3.96 16 35 H 0.09 1.58 7.86 -2.39 -0.02 1.56 16 36 H 0.05 1.00 7.37 -2.38 -0.02 0.99 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.11 7.37 -2.38 -0.02 1.09 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.15 3.69 7.93 -2.91 -0.02 3.67 16 43 H 0.40 12.06 9.06 -74.06 -0.67 11.39 16 Total: -1.00 -64.77 344.60 4.92 -59.86 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.30 Total: 33.11 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.72 Total: -12.00 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.10 Total: -72.34 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.72 Total: -51.75 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.72 Total: 43.12 kcal Total: -64.77 4.92 -59.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271318147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.342 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds