Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 N 1.46500 * 109.47481 * 180.02562 * 3 2 1 5 5 C 1.37106 * 119.99783 * 270.00054 * 4 3 2 6 6 H 1.07995 * 119.99626 * 144.79565 * 5 4 3 7 7 C 1.38948 * 119.99930 * 324.79855 * 5 4 3 8 8 N 1.31407 * 119.99899 * 338.30036 * 7 5 4 9 9 Si 1.86798 * 119.99830 * 158.30878 * 7 5 4 10 10 H 1.48497 * 109.47123 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47283 * 119.99848 * 9 7 5 12 12 H 1.48500 * 109.46796 * 239.99561 * 9 7 5 13 13 C 1.34774 * 119.99919 * 90.00032 * 4 3 2 14 14 O 1.21292 * 120.00277 * 354.32165 * 13 4 3 15 15 C 1.50700 * 119.99877 * 174.32819 * 13 4 3 16 16 C 1.52995 * 109.47388 * 186.37108 * 15 13 4 17 17 C 1.52998 * 109.47456 * 64.97344 * 16 15 13 18 18 O 1.42901 * 109.46855 * 304.97591 * 16 15 13 19 19 C 1.50694 * 109.47584 * 184.97858 * 16 15 13 20 20 C 1.38240 * 119.99974 * 304.48192 * 19 16 15 21 21 C 1.38235 * 120.00222 * 179.78579 * 20 19 16 22 22 C 1.38234 * 119.99964 * 0.44284 * 21 20 19 23 23 C 1.38235 * 119.99969 * 359.81188 * 22 21 20 24 24 C 1.38236 * 120.00424 * 124.75280 * 19 16 15 25 25 H 1.09007 * 109.46691 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47230 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47220 * 60.00230 * 1 2 3 28 28 H 1.08996 * 109.47230 * 240.00268 * 2 1 3 29 29 H 1.08997 * 109.47220 * 119.99770 * 2 1 3 30 30 H 1.09008 * 109.47284 * 60.00026 * 3 2 1 31 31 H 1.09003 * 109.47339 * 299.99983 * 3 2 1 32 32 H 0.97006 * 120.00212 * 185.02626 * 8 7 5 33 33 H 1.09005 * 109.47515 * 66.36838 * 15 13 4 34 34 H 1.09003 * 109.47155 * 306.37051 * 15 13 4 35 35 H 1.08997 * 109.47586 * 180.02562 * 17 16 15 36 36 H 1.09008 * 109.46920 * 300.00605 * 17 16 15 37 37 H 1.09009 * 109.46863 * 60.00066 * 17 16 15 38 38 H 0.96697 * 114.00604 * 299.99757 * 18 16 15 39 39 H 1.08002 * 119.99297 * 359.97438 * 20 19 16 40 40 H 1.08002 * 119.99563 * 180.27346 * 21 20 19 41 41 H 1.08000 * 120.00161 * 179.83293 * 22 21 20 42 42 H 1.07994 * 120.00057 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99892 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.4425 1.1865 6 1 5.1229 0.9033 1.2715 7 6 3.6872 2.1359 2.2801 8 7 2.8267 3.1125 2.0992 9 14 4.2332 1.6801 4.0073 10 1 5.1999 0.5549 3.9401 11 1 4.8817 2.8528 4.6472 12 1 3.0517 1.2699 4.8079 13 6 4.1784 1.4428 -1.1681 14 8 3.5760 1.3390 -2.2157 15 6 5.6798 1.5719 -1.1719 16 6 6.1767 1.7043 -2.6128 17 6 5.6561 3.0114 -3.2139 18 8 5.6982 0.6011 -3.3849 19 6 7.6836 1.7104 -2.6261 20 6 8.3777 2.6349 -1.8680 21 6 9.7600 2.6377 -1.8767 22 6 10.4482 1.7221 -2.6505 23 6 9.7541 0.8010 -3.4127 24 6 8.3718 0.7954 -3.4006 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5306 3.6442 2.8546 33 1 6.1219 0.6864 -0.7150 34 1 5.9699 2.4565 -0.6048 35 1 6.0097 3.1055 -4.2406 36 1 4.5660 3.0069 -3.2043 37 1 6.0211 3.8529 -2.6249 38 1 5.9899 -0.2619 -3.0607 39 1 7.8399 3.3529 -1.2666 40 1 10.3022 3.3571 -1.2809 41 1 11.5282 1.7260 -2.6594 42 1 10.2918 0.0860 -4.0176 43 1 7.8295 0.0757 -3.9959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272766844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = -66.534645 kcal Electronic energy + Delta-G solvation = -24026.597705 eV Core-core repulsion = 20650.556586 eV Total energy + Delta-G solvation = -3376.041119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85242 -38.43620 -36.62035 -34.83085 -32.83215 -32.34544 -31.24025 -30.67475 -29.46375 -27.57476 -25.63091 -24.31200 -23.03102 -22.31209 -20.80236 -19.84928 -18.98442 -17.73906 -16.66053 -15.85229 -15.60575 -15.04371 -14.90185 -14.51681 -14.23523 -14.09083 -13.90716 -13.58730 -13.36040 -13.13361 -12.70291 -12.40054 -12.30733 -11.94297 -11.67670 -11.56655 -11.42571 -11.29444 -11.10740 -10.98986 -10.93548 -10.77176 -10.56866 -10.50888 -10.28697 -10.17410 -9.70000 -9.56385 -9.08069 -8.81065 -8.58646 -8.20148 -7.43533 -6.37342 -4.04178 1.45852 1.51069 3.07261 3.19372 3.22441 3.88583 3.96337 4.10632 4.58345 4.76274 4.94407 5.03873 5.06250 5.13290 5.27830 5.46832 5.59217 5.62920 5.71260 5.83966 5.87918 6.04026 6.08479 6.12500 6.23550 6.28800 6.35340 6.45589 6.48806 6.55999 6.58141 6.60442 6.66882 6.73737 6.75204 6.88118 6.92082 7.10861 7.18298 7.37484 7.55359 7.97554 8.16356 8.40945 9.10325 9.59640 10.03310 10.63347 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.005189 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.363848 B = 5395.110505 C = 6589.020371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.113 3.887 4 N -0.444 5.444 5 C -0.337 4.337 6 H 0.086 0.914 7 C 0.044 3.956 8 N -0.860 5.860 9 Si 0.910 3.090 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.471 3.529 14 O -0.582 6.582 15 C -0.141 4.141 16 C 0.190 3.810 17 C -0.134 4.134 18 O -0.531 6.531 19 C -0.102 4.102 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.114 4.114 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.363 0.637 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -2.284 -4.470 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.163 5.163 5 C -0.465 4.465 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.496 5.496 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.260 3.740 14 O -0.467 6.467 15 C -0.182 4.182 16 C 0.148 3.852 17 C -0.191 4.191 18 O -0.334 6.334 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.209 0.791 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.433 -1.740 -5.192 10.055 hybrid contribution 0.729 -0.583 1.559 1.817 sum 9.162 -2.323 -3.634 10.126 Atomic orbital electron populations 1.21660 0.96793 1.00323 1.01300 1.21808 0.94489 0.99658 1.01151 1.21450 0.81667 0.94536 1.03372 1.43497 1.04641 1.63662 1.04457 1.19415 1.07967 1.31656 0.87487 0.89588 1.25333 0.96578 0.94126 1.00110 1.69840 1.31824 1.16071 1.31902 0.86141 0.78729 0.78803 0.82650 1.19241 1.20733 1.20476 1.20158 0.88893 0.81035 0.83956 1.90564 1.69985 1.54694 1.31424 1.22108 0.96084 1.04009 0.95951 1.19728 0.86079 0.88897 0.90494 1.21780 1.04202 0.93229 0.99856 1.86689 1.76129 1.15450 1.55167 1.20789 0.96909 0.95884 0.96616 1.21075 0.94126 0.98669 0.98728 1.21124 0.94306 0.99094 0.99378 1.21102 0.99535 0.96305 0.97822 1.21098 0.94271 0.99079 0.99661 1.21040 0.94008 0.99136 0.98971 0.93752 0.93077 0.93195 0.92977 0.92531 0.87591 0.93145 0.92022 0.90548 0.88846 0.92940 0.89426 0.92047 0.79127 0.85697 0.86222 0.86535 0.86403 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.77 6.26 -26.73 -0.17 -2.94 16 3 C 0.11 2.72 4.96 -4.04 -0.02 2.70 16 4 N -0.44 -11.01 2.54 -114.81 -0.29 -11.30 16 5 C -0.34 -8.37 8.56 -14.93 -0.13 -8.50 16 6 H 0.09 2.06 7.21 -52.49 -0.38 1.68 16 7 C 0.04 1.10 4.97 -17.47 -0.09 1.01 16 8 N -0.86 -22.25 11.31 55.50 0.63 -21.63 16 9 Si 0.91 19.14 29.61 -169.99 -5.03 14.11 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.47 11.17 7.10 -10.99 -0.08 11.10 16 14 O -0.58 -14.91 12.91 -15.86 -0.20 -15.12 16 15 C -0.14 -2.77 3.30 -27.89 -0.09 -2.86 16 16 C 0.19 3.31 0.81 -91.78 -0.07 3.24 16 17 C -0.13 -2.39 8.45 37.16 0.31 -2.08 16 18 O -0.53 -9.66 10.28 -56.64 -0.58 -10.24 16 19 C -0.10 -1.53 4.77 -104.63 -0.50 -2.03 16 20 C -0.11 -1.53 8.78 -39.58 -0.35 -1.87 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 24 C -0.11 -1.54 9.21 -39.58 -0.36 -1.90 16 25 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 2.70 5.36 -51.92 -0.28 2.42 16 31 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 32 H 0.27 6.57 8.32 -40.82 -0.34 6.24 16 33 H 0.08 1.43 7.82 -51.93 -0.41 1.03 16 34 H 0.09 1.84 7.21 -51.93 -0.37 1.47 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.84 6.18 -51.92 -0.32 1.52 16 37 H 0.06 1.00 7.66 -51.92 -0.40 0.60 16 38 H 0.36 5.45 8.30 45.56 0.38 5.83 16 39 H 0.13 1.73 7.17 -52.49 -0.38 1.35 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.13 1.60 6.73 -52.49 -0.35 1.24 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -29.12 347.68 -8.45 -37.57 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.84 Total: 13.25 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.37 Total: -11.89 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.34 Total: -32.92 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.79 Total: -25.36 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.12 -8.45 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272766844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.960 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds