Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47065 * 2 1 4 4 N 1.46500 * 109.47481 * 180.02562 * 3 2 1 5 5 C 1.37106 * 119.99783 * 270.00054 * 4 3 2 6 6 H 1.07995 * 119.99626 * 144.79565 * 5 4 3 7 7 C 1.38948 * 119.99930 * 324.79855 * 5 4 3 8 8 N 1.31407 * 119.99899 * 338.30036 * 7 5 4 9 9 Si 1.86798 * 119.99830 * 158.30878 * 7 5 4 10 10 H 1.48497 * 109.47123 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47283 * 119.99848 * 9 7 5 12 12 H 1.48500 * 109.46796 * 239.99561 * 9 7 5 13 13 C 1.34774 * 119.99919 * 90.00032 * 4 3 2 14 14 O 1.21292 * 120.00277 * 354.32165 * 13 4 3 15 15 C 1.50700 * 119.99877 * 174.32819 * 13 4 3 16 16 C 1.52995 * 109.47388 * 186.37108 * 15 13 4 17 17 C 1.52998 * 109.47456 * 64.97344 * 16 15 13 18 18 O 1.42901 * 109.46855 * 304.97591 * 16 15 13 19 19 C 1.50694 * 109.47584 * 184.97858 * 16 15 13 20 20 C 1.38240 * 119.99974 * 304.48192 * 19 16 15 21 21 C 1.38235 * 120.00222 * 179.78579 * 20 19 16 22 22 C 1.38234 * 119.99964 * 0.44284 * 21 20 19 23 23 C 1.38235 * 119.99969 * 359.81188 * 22 21 20 24 24 C 1.38236 * 120.00424 * 124.75280 * 19 16 15 25 25 H 1.09007 * 109.46691 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47230 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47220 * 60.00230 * 1 2 3 28 28 H 1.08996 * 109.47230 * 240.00268 * 2 1 3 29 29 H 1.08997 * 109.47220 * 119.99770 * 2 1 3 30 30 H 1.09008 * 109.47284 * 60.00026 * 3 2 1 31 31 H 1.09003 * 109.47339 * 299.99983 * 3 2 1 32 32 H 0.97006 * 120.00212 * 185.02626 * 8 7 5 33 33 H 1.09005 * 109.47515 * 66.36838 * 15 13 4 34 34 H 1.09003 * 109.47155 * 306.37051 * 15 13 4 35 35 H 1.08997 * 109.47586 * 180.02562 * 17 16 15 36 36 H 1.09008 * 109.46920 * 300.00605 * 17 16 15 37 37 H 1.09009 * 109.46863 * 60.00066 * 17 16 15 38 38 H 0.96697 * 114.00604 * 299.99757 * 18 16 15 39 39 H 1.08002 * 119.99297 * 359.97438 * 20 19 16 40 40 H 1.08002 * 119.99563 * 180.27346 * 21 20 19 41 41 H 1.08000 * 120.00161 * 179.83293 * 22 21 20 42 42 H 1.07994 * 120.00057 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99892 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1910 1.4425 1.1865 6 1 5.1229 0.9033 1.2715 7 6 3.6872 2.1359 2.2801 8 7 2.8267 3.1125 2.0992 9 14 4.2332 1.6801 4.0073 10 1 5.1999 0.5549 3.9401 11 1 4.8817 2.8528 4.6472 12 1 3.0517 1.2699 4.8079 13 6 4.1784 1.4428 -1.1681 14 8 3.5760 1.3390 -2.2157 15 6 5.6798 1.5719 -1.1719 16 6 6.1767 1.7043 -2.6128 17 6 5.6561 3.0114 -3.2139 18 8 5.6982 0.6011 -3.3849 19 6 7.6836 1.7104 -2.6261 20 6 8.3777 2.6349 -1.8680 21 6 9.7600 2.6377 -1.8767 22 6 10.4482 1.7221 -2.6505 23 6 9.7541 0.8010 -3.4127 24 6 8.3718 0.7954 -3.4006 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5306 3.6442 2.8546 33 1 6.1219 0.6864 -0.7150 34 1 5.9699 2.4565 -0.6048 35 1 6.0097 3.1055 -4.2406 36 1 4.5660 3.0069 -3.2043 37 1 6.0211 3.8529 -2.6249 38 1 5.9899 -0.2619 -3.0607 39 1 7.8399 3.3529 -1.2666 40 1 10.3022 3.3571 -1.2809 41 1 11.5282 1.7260 -2.6594 42 1 10.2918 0.0860 -4.0176 43 1 7.8295 0.0757 -3.9959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272766844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -81.728825 kcal Electronic energy + Delta-G solvation = -24027.256574 eV Core-core repulsion = 20650.556586 eV Total energy + Delta-G solvation = -3376.699988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20975 -40.00078 -38.01293 -36.67258 -34.55450 -33.73523 -33.09493 -31.65310 -30.67580 -29.13669 -27.44355 -26.07987 -24.23120 -23.31527 -22.44062 -21.26367 -20.77615 -19.16162 -18.26150 -17.53398 -16.98304 -16.57843 -16.35325 -15.99289 -15.73058 -15.59864 -15.40334 -15.03536 -14.68599 -14.40572 -14.13548 -13.99107 -13.54040 -13.37392 -13.27286 -13.18165 -13.02092 -12.88899 -12.62939 -12.50112 -12.36256 -12.30462 -12.06243 -11.97886 -11.85247 -11.71080 -11.50407 -11.07407 -10.85787 -10.12365 -9.77920 -9.59802 -9.37729 -8.27018 -6.00498 0.45418 0.54059 1.39909 1.48031 1.59173 2.11353 2.32673 2.86163 3.01787 3.09014 3.42217 3.74657 3.92454 4.09096 4.18302 4.19773 4.22374 4.32399 4.34541 4.48130 4.61083 4.65488 4.67792 4.76313 4.82451 4.84939 4.98389 4.98828 5.01711 5.09985 5.12952 5.20216 5.21505 5.31602 5.39179 5.47832 5.61962 5.62741 5.65358 5.73966 6.07552 6.15106 6.48323 6.89185 7.17983 7.69127 8.13410 8.74828 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015671 B = 0.005189 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.363848 B = 5395.110505 C = 6589.020371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.114 3.886 4 N -0.457 5.457 5 C -0.351 4.351 6 H 0.093 0.907 7 C 0.006 3.994 8 N -0.892 5.892 9 Si 0.977 3.023 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.459 3.541 14 O -0.607 6.607 15 C -0.129 4.129 16 C 0.196 3.804 17 C -0.131 4.131 18 O -0.548 6.548 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.272 0.728 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.375 0.625 39 H 0.119 0.881 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.441 -3.208 -3.837 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.010 4.010 4 N -0.176 5.176 5 C -0.479 4.479 6 H 0.110 0.890 7 C -0.198 4.198 8 N -0.529 5.529 9 Si 0.801 3.199 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.249 3.751 14 O -0.493 6.493 15 C -0.169 4.169 16 C 0.155 3.845 17 C -0.188 4.188 18 O -0.353 6.353 19 C -0.118 4.118 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.140 4.140 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.222 0.778 39 H 0.137 0.863 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.688 -2.674 -4.561 11.924 hybrid contribution 0.057 -0.267 1.303 1.331 sum 10.745 -2.941 -3.258 11.607 Atomic orbital electron populations 1.21611 0.93870 1.02248 1.01614 1.21688 0.97033 0.97141 1.00218 1.21398 0.81912 0.96205 1.01460 1.43768 1.04987 1.63838 1.05027 1.19681 1.08445 1.32010 0.87731 0.88971 1.26126 0.96530 0.93604 1.03498 1.69944 1.32951 1.16982 1.33056 0.85117 0.78330 0.78662 0.77768 1.18300 1.20347 1.20479 1.20867 0.90666 0.80224 0.83315 1.90537 1.71009 1.55616 1.32164 1.22034 0.92937 1.04014 0.97887 1.19574 0.88030 0.88255 0.88641 1.21729 1.01697 0.94469 1.00908 1.86648 1.76782 1.16379 1.55491 1.20507 0.94970 0.97652 0.98640 1.21152 0.95263 0.98703 0.99052 1.21418 0.93525 0.99691 0.99543 1.21516 1.01187 0.95131 0.96424 1.21441 0.93552 0.99472 0.99559 1.21177 0.95069 0.98916 0.98867 0.90988 0.92670 0.92997 0.94253 0.92878 0.88992 0.95285 0.91795 0.89749 0.89250 0.91930 0.93095 0.90914 0.77787 0.86295 0.84035 0.83430 0.83674 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.91 71.98 0.71 -3.90 16 2 C -0.12 -5.19 6.26 30.59 0.19 -4.99 16 3 C 0.11 5.67 4.96 86.38 0.43 6.10 16 4 N -0.46 -23.36 2.54 -635.53 -1.61 -24.97 16 5 C -0.35 -17.60 8.56 84.04 0.72 -16.88 16 6 H 0.09 4.41 7.21 -2.91 -0.02 4.39 16 7 C 0.01 0.27 4.97 84.93 0.42 0.69 16 8 N -0.89 -46.87 11.31 21.66 0.24 -46.62 16 9 Si 0.98 38.82 29.61 68.60 2.03 40.85 16 10 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 13 C 0.46 22.55 7.10 87.66 0.62 23.18 16 14 O -0.61 -32.44 12.91 17.40 0.22 -32.21 16 15 C -0.13 -5.14 3.30 29.85 0.10 -5.04 16 16 C 0.20 6.95 0.81 -11.54 -0.01 6.94 16 17 C -0.13 -4.84 8.45 71.98 0.61 -4.23 16 18 O -0.55 -20.21 10.28 -128.51 -1.32 -21.53 16 19 C -0.12 -3.45 4.77 -19.87 -0.09 -3.54 16 20 C -0.12 -3.36 8.78 22.27 0.20 -3.16 16 21 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 22 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 24 C -0.12 -3.11 9.21 22.27 0.21 -2.90 16 25 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.09 4.85 5.36 -2.38 -0.01 4.83 16 31 H 0.03 1.52 7.51 -2.39 -0.02 1.50 16 32 H 0.27 13.43 8.32 -92.70 -0.77 12.66 16 33 H 0.08 3.19 7.82 -2.38 -0.02 3.17 16 34 H 0.09 3.61 7.21 -2.39 -0.02 3.59 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 2.24 6.18 -2.38 -0.01 2.23 16 37 H 0.07 2.43 7.66 -2.38 -0.02 2.41 16 38 H 0.37 11.34 8.30 -74.06 -0.61 10.73 16 39 H 0.12 3.26 7.17 -2.91 -0.02 3.24 16 40 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.13 3.13 6.73 -2.91 -0.02 3.11 16 Total: -1.00 -63.62 347.68 4.73 -58.90 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.39 Total: 40.29 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.77 Total: -14.70 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -1.37 Total: -71.59 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -1.10 Total: -53.74 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -63.62 4.73 -58.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272766844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.830 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds