Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08999 * 109.47465 * 54.99953 * 3 2 1 5 5 O 1.42897 * 109.47071 * 294.99716 * 3 2 1 6 6 C 1.35902 * 116.99888 * 99.35776 * 5 3 2 7 7 C 1.38750 * 120.05801 * 354.40101 * 6 5 3 8 8 C 1.38122 * 119.95113 * 179.72344 * 7 6 5 9 9 C 1.38291 * 120.04842 * 0.27552 * 8 7 6 10 10 C 1.38244 * 120.11349 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.96994 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05663 * 359.97102 * 10 9 8 13 13 C 1.50705 * 109.47337 * 175.00123 * 3 2 1 14 14 O 1.21273 * 119.99972 * 119.99478 * 13 3 2 15 15 N 1.34780 * 119.99448 * 299.99830 * 13 3 2 16 16 C 1.46497 * 119.99682 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.46885 * 180.02562 * 16 15 13 18 18 C 1.50709 * 109.47006 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00095 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00158 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47464 * 89.99267 * 22 20 18 24 24 H 1.48498 * 109.47387 * 209.99612 * 22 20 18 25 25 H 1.48503 * 109.46883 * 329.99671 * 22 20 18 26 26 H 1.09001 * 109.47327 * 60.00196 * 1 2 3 27 27 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47191 * 300.00107 * 1 2 3 29 29 H 1.08998 * 109.47564 * 240.00174 * 2 1 3 30 30 H 1.09001 * 109.46875 * 119.99521 * 2 1 3 31 31 H 1.08005 * 120.02742 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.97702 * 180.30027 * 8 7 6 33 33 H 1.08001 * 119.94377 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47039 * 89.99671 * 11 10 9 35 35 H 1.08999 * 109.46930 * 209.99623 * 11 10 9 36 36 H 1.09004 * 109.47225 * 330.00039 * 11 10 9 37 37 H 1.07998 * 120.02783 * 180.02562 * 12 10 9 38 38 H 0.97004 * 120.00261 * 0.02562 * 15 13 3 39 39 H 1.08994 * 109.47633 * 300.00393 * 16 15 13 40 40 H 1.08998 * 109.46884 * 60.00370 * 16 15 13 41 41 H 1.08999 * 109.47117 * 300.00008 * 17 16 15 42 42 H 1.08998 * 109.47208 * 60.00385 * 17 16 15 43 43 H 0.96999 * 119.99816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8839 -1.1839 7 6 -0.1991 2.9626 -0.0289 8 6 -1.3094 3.7833 0.0083 9 6 -1.6622 4.5219 -1.1063 10 6 -0.9055 4.4404 -2.2603 11 6 -1.2933 5.2463 -3.4734 12 6 0.2061 3.6210 -2.3025 13 6 3.5419 1.4444 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8926 1.3233 17 6 5.9945 0.2081 2.6305 18 6 7.4964 0.2100 2.7544 19 1 8.1017 0.6546 1.9782 20 6 8.0978 -0.3566 3.8581 21 7 7.3607 -0.8984 4.8030 22 14 9.9594 -0.3537 4.0120 23 1 10.3960 0.8788 4.7160 24 1 10.3942 -1.5452 4.7843 25 1 10.5681 -0.3922 2.6580 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.0759 2.3857 0.8418 32 1 -1.9022 3.8486 0.9086 33 1 -2.5310 5.1627 -1.0755 34 1 -0.8011 6.2182 -3.4365 35 1 -0.9851 4.7169 -4.3749 36 1 -2.3742 5.3868 -3.4859 37 1 0.7972 3.5581 -3.2042 38 1 3.5860 0.4916 1.9001 39 1 6.0241 0.3534 0.4816 40 1 5.9533 1.9201 1.3231 41 1 5.5601 0.7471 3.4725 42 1 5.6309 -0.8194 2.6303 43 1 7.7838 -1.2968 5.5796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272969505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = -67.661465 kcal Electronic energy + Delta-G solvation = -22636.800736 eV Core-core repulsion = 19260.710754 eV Total energy + Delta-G solvation = -3376.089982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80741 -39.21396 -37.63389 -34.94447 -33.96141 -32.79777 -32.71598 -30.39645 -29.83330 -27.45423 -27.19668 -24.62051 -22.78168 -22.63010 -21.61596 -20.90744 -19.82489 -18.33755 -17.24928 -16.47818 -16.16720 -15.93385 -15.57799 -15.02992 -14.71015 -14.66611 -14.47715 -14.02956 -13.86923 -13.55077 -13.37887 -13.08994 -12.98271 -12.50252 -12.33546 -12.22535 -12.11906 -11.93567 -11.75994 -11.36074 -11.23809 -11.07767 -10.99824 -10.68224 -10.64313 -10.37434 -9.80533 -9.48635 -9.21985 -8.97145 -8.61370 -8.40910 -8.27263 -6.12511 -4.15402 1.12839 1.28671 2.70749 2.86430 3.27847 3.34106 3.38369 3.57426 3.75322 4.38975 4.48167 4.60174 4.62530 4.64368 4.82292 4.88553 5.01242 5.06845 5.16283 5.24079 5.24765 5.33157 5.34970 5.45869 5.51518 5.65468 5.74300 5.85019 5.88962 6.01674 6.17691 6.24498 6.26494 6.29424 6.39549 6.59562 6.67972 6.80793 7.27634 7.47281 7.56657 7.85226 7.89050 8.23503 8.52625 8.90386 9.49680 10.99060 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.002661 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.255420 B =10521.768629 C =10827.068397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.064 3.936 4 H 0.102 0.898 5 O -0.281 6.281 6 C 0.140 3.860 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.049 4.049 11 C -0.115 4.115 12 C -0.153 4.153 13 C 0.505 3.495 14 O -0.528 6.528 15 N -0.717 5.717 16 C 0.122 3.878 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 6.913 -10.052 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.004 3.996 4 H 0.120 0.880 5 O -0.193 6.193 6 C 0.094 3.906 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.172 4.172 13 C 0.288 3.712 14 O -0.404 6.404 15 N -0.369 5.369 16 C 0.001 3.999 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.736 7.133 -10.690 24.395 hybrid contribution 0.720 -0.313 0.879 1.178 sum -20.016 6.820 -9.811 23.311 Atomic orbital electron populations 1.21928 0.94577 1.02468 1.02262 1.21993 0.97196 0.93981 1.04489 1.22471 0.93935 0.95238 0.87984 0.88028 1.86215 1.42151 1.58199 1.32718 1.19074 0.86623 0.90490 0.94388 1.21376 0.98814 1.05130 0.98442 1.20899 0.95656 0.94684 0.98138 1.20910 1.01453 1.02535 0.93297 1.19694 0.93792 0.95705 0.95722 1.20809 1.01757 0.99454 0.95092 1.20305 0.99273 0.99450 0.98175 1.20184 0.88806 0.79338 0.82848 1.90711 1.64952 1.44759 1.39928 1.46261 1.09890 1.58931 1.21794 1.21780 0.75824 1.01146 1.01200 1.19331 0.97129 0.95823 0.90168 1.21043 0.91142 1.38176 1.05712 0.92215 1.24994 0.98595 0.95045 0.95643 1.69951 1.35372 1.38387 1.09584 0.86502 0.85153 0.77578 0.78279 1.20538 1.21148 1.19709 0.92106 0.91885 0.92296 0.89987 0.89397 0.84980 0.85817 0.86108 0.90877 0.91312 0.91377 0.85176 0.76840 0.92340 0.92401 0.95897 0.95847 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.48 37.16 0.32 -1.08 16 2 C -0.14 -1.49 5.59 -26.73 -0.15 -1.64 16 3 C 0.06 0.84 2.54 -27.88 -0.07 0.77 16 4 H 0.10 1.13 5.43 -51.93 -0.28 0.85 16 5 O -0.28 -4.18 9.11 -39.34 -0.36 -4.54 16 6 C 0.14 1.79 5.65 -39.22 -0.22 1.57 16 7 C -0.22 -2.35 7.36 -39.43 -0.29 -2.64 16 8 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 9 C -0.16 -1.49 9.70 -39.56 -0.38 -1.87 16 10 C -0.05 -0.48 5.88 -104.64 -0.62 -1.10 16 11 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 12 C -0.15 -1.81 9.64 -39.43 -0.38 -2.19 16 13 C 0.50 8.78 7.23 -10.98 -0.08 8.70 16 14 O -0.53 -11.53 16.50 -14.35 -0.24 -11.77 16 15 N -0.72 -12.22 5.42 -60.30 -0.33 -12.55 16 16 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.46 6.73 -51.93 -0.35 0.11 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.84 7.43 -51.93 -0.39 0.45 16 31 H 0.13 1.23 4.27 -52.48 -0.22 1.01 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.40 5.65 7.83 -40.82 -0.32 5.33 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -32.68 354.16 -8.87 -41.54 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.51 Total: 2.23 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.49 Total: -11.40 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.41 Total: -37.64 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.60 Total: -16.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.68 -8.87 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272969505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.121 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds