Wall clock time and date at job start Tue Mar 31 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46935 * 2 1 4 4 H 1.08999 * 109.47465 * 54.99953 * 3 2 1 5 5 O 1.42897 * 109.47071 * 294.99716 * 3 2 1 6 6 C 1.35902 * 116.99888 * 99.35776 * 5 3 2 7 7 C 1.38750 * 120.05801 * 354.40101 * 6 5 3 8 8 C 1.38122 * 119.95113 * 179.72344 * 7 6 5 9 9 C 1.38291 * 120.04842 * 0.27552 * 8 7 6 10 10 C 1.38244 * 120.11349 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.96994 * 179.97438 * 10 9 8 12 12 C 1.38163 * 120.05663 * 359.97102 * 10 9 8 13 13 C 1.50705 * 109.47337 * 175.00123 * 3 2 1 14 14 O 1.21273 * 119.99972 * 119.99478 * 13 3 2 15 15 N 1.34780 * 119.99448 * 299.99830 * 13 3 2 16 16 C 1.46497 * 119.99682 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.46885 * 180.02562 * 16 15 13 18 18 C 1.50709 * 109.47006 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00095 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00158 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47464 * 89.99267 * 22 20 18 24 24 H 1.48498 * 109.47387 * 209.99612 * 22 20 18 25 25 H 1.48503 * 109.46883 * 329.99671 * 22 20 18 26 26 H 1.09001 * 109.47327 * 60.00196 * 1 2 3 27 27 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47191 * 300.00107 * 1 2 3 29 29 H 1.08998 * 109.47564 * 240.00174 * 2 1 3 30 30 H 1.09001 * 109.46875 * 119.99521 * 2 1 3 31 31 H 1.08005 * 120.02742 * 359.97438 * 7 6 5 32 32 H 1.07990 * 119.97702 * 180.30027 * 8 7 6 33 33 H 1.08001 * 119.94377 * 179.97438 * 9 8 7 34 34 H 1.09004 * 109.47039 * 89.99671 * 11 10 9 35 35 H 1.08999 * 109.46930 * 209.99623 * 11 10 9 36 36 H 1.09004 * 109.47225 * 330.00039 * 11 10 9 37 37 H 1.07998 * 120.02783 * 180.02562 * 12 10 9 38 38 H 0.97004 * 120.00261 * 0.02562 * 15 13 3 39 39 H 1.08994 * 109.47633 * 300.00393 * 16 15 13 40 40 H 1.08998 * 109.46884 * 60.00370 * 16 15 13 41 41 H 1.08999 * 109.47117 * 300.00008 * 17 16 15 42 42 H 1.08998 * 109.47208 * 60.00385 * 17 16 15 43 43 H 0.96999 * 119.99816 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8839 -1.1839 7 6 -0.1991 2.9626 -0.0289 8 6 -1.3094 3.7833 0.0083 9 6 -1.6622 4.5219 -1.1063 10 6 -0.9055 4.4404 -2.2603 11 6 -1.2933 5.2463 -3.4734 12 6 0.2061 3.6210 -2.3025 13 6 3.5419 1.4444 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8926 1.3233 17 6 5.9945 0.2081 2.6305 18 6 7.4964 0.2100 2.7544 19 1 8.1017 0.6546 1.9782 20 6 8.0978 -0.3566 3.8581 21 7 7.3607 -0.8984 4.8030 22 14 9.9594 -0.3537 4.0120 23 1 10.3960 0.8788 4.7160 24 1 10.3942 -1.5452 4.7843 25 1 10.5681 -0.3922 2.6580 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 0.0759 2.3857 0.8418 32 1 -1.9022 3.8486 0.9086 33 1 -2.5310 5.1627 -1.0755 34 1 -0.8011 6.2182 -3.4365 35 1 -0.9851 4.7169 -4.3749 36 1 -2.3742 5.3868 -3.4859 37 1 0.7972 3.5581 -3.2042 38 1 3.5860 0.4916 1.9001 39 1 6.0241 0.3534 0.4816 40 1 5.9533 1.9201 1.3231 41 1 5.5601 0.7471 3.4725 42 1 5.6309 -0.8194 2.6303 43 1 7.7838 -1.2968 5.5796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272969505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:30 Heat of formation + Delta-G solvation = -86.672657 kcal Electronic energy + Delta-G solvation = -22637.625123 eV Core-core repulsion = 19260.710754 eV Total energy + Delta-G solvation = -3376.914369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.83833 -40.43631 -38.62292 -36.65712 -35.16665 -34.50885 -33.43172 -31.67198 -31.15581 -28.64611 -27.86773 -26.46107 -23.56989 -23.46343 -23.17224 -22.36084 -20.98800 -19.28986 -18.59189 -18.38076 -17.10610 -17.01443 -16.67928 -16.49038 -16.31091 -16.08591 -15.47266 -15.01277 -14.87820 -14.71698 -14.42975 -14.30478 -14.12177 -13.75469 -13.34255 -13.24922 -13.08281 -12.95879 -12.90954 -12.70224 -12.55129 -12.47404 -12.27172 -12.09129 -11.87079 -11.68690 -11.49604 -11.44945 -10.79970 -10.61470 -10.12701 -9.73398 -9.12157 -8.25191 -6.35237 0.36797 0.48247 1.40918 1.41530 1.42367 1.52728 1.64448 2.38409 2.57416 2.80472 3.09774 3.47607 3.60130 3.71200 3.91852 3.94568 4.14861 4.22143 4.35936 4.39577 4.45320 4.46163 4.48639 4.56582 4.71514 4.82063 4.83501 4.88276 4.97644 5.01092 5.07436 5.19733 5.25019 5.29053 5.39249 5.45026 5.50404 5.56723 5.66064 5.76606 5.85936 6.14606 6.35360 6.52989 6.77397 7.12690 7.33957 8.86468 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.002661 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.255420 B =10521.768629 C =10827.068397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.073 3.927 4 H 0.127 0.873 5 O -0.309 6.309 6 C 0.112 3.888 7 C -0.223 4.223 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.054 4.054 11 C -0.114 4.114 12 C -0.177 4.177 13 C 0.503 3.497 14 O -0.578 6.578 15 N -0.706 5.706 16 C 0.140 3.860 17 C 0.024 3.976 18 C -0.548 4.548 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.268 1.268 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.414 0.586 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.012 0.988 42 H 0.013 0.987 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.147 7.417 -9.339 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.013 3.987 4 H 0.144 0.856 5 O -0.223 6.223 6 C 0.067 3.933 7 C -0.241 4.241 8 C -0.094 4.094 9 C -0.181 4.181 10 C -0.054 4.054 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.289 3.711 14 O -0.457 6.457 15 N -0.359 5.359 16 C 0.017 3.983 17 C -0.013 4.013 18 C -0.586 4.586 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.516 7.630 -9.964 25.778 hybrid contribution 1.186 -0.417 0.627 1.405 sum -21.330 7.213 -9.338 24.376 Atomic orbital electron populations 1.21885 0.92745 1.03430 1.02487 1.22015 0.98690 0.92051 1.04495 1.22462 0.90362 0.97128 0.88701 0.85580 1.86167 1.43534 1.59119 1.33432 1.19344 0.86846 0.91294 0.95766 1.21545 0.99025 1.05600 0.97960 1.21293 0.95149 0.93658 0.99286 1.21309 1.01824 1.02257 0.92730 1.20038 0.92982 0.95176 0.97168 1.20869 1.03031 0.99196 0.93932 1.20487 1.00449 1.00643 0.97992 1.20987 0.90746 0.77731 0.81628 1.90683 1.66560 1.46848 1.41599 1.46012 1.08408 1.58965 1.22508 1.21285 0.78259 0.99751 0.99025 1.19134 0.95785 0.95239 0.91189 1.21454 0.92860 1.38383 1.05935 0.92497 1.25831 1.03366 0.94554 0.95263 1.70043 1.37285 1.38959 1.10089 0.85473 0.79447 0.77897 0.78406 1.19784 1.20427 1.19251 0.93352 0.90537 0.90556 0.91479 0.87885 0.83736 0.82959 0.83404 0.90260 0.91254 0.89451 0.86167 0.74916 0.93488 0.93537 0.96967 0.96879 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.48 71.98 0.61 -1.76 16 2 C -0.13 -2.76 5.59 30.59 0.17 -2.59 16 3 C 0.07 1.90 2.54 29.85 0.08 1.98 16 4 H 0.13 2.62 5.43 -2.39 -0.01 2.60 16 5 O -0.31 -9.44 9.11 -73.40 -0.67 -10.11 16 6 C 0.11 2.87 5.65 22.51 0.13 3.00 16 7 C -0.22 -4.39 7.36 22.36 0.16 -4.22 16 8 C -0.08 -1.20 10.04 22.25 0.22 -0.97 16 9 C -0.16 -2.53 9.70 22.28 0.22 -2.32 16 10 C -0.05 -0.98 5.88 -19.88 -0.12 -1.10 16 11 C -0.11 -1.41 10.01 71.24 0.71 -0.69 16 12 C -0.18 -4.25 9.64 22.37 0.22 -4.04 16 13 C 0.50 17.75 7.23 87.66 0.63 18.39 16 14 O -0.58 -26.18 16.50 16.03 0.26 -25.91 16 15 N -0.71 -24.13 5.42 -463.07 -2.51 -26.64 16 16 C 0.14 6.02 5.61 86.38 0.48 6.51 16 17 C 0.02 1.19 5.09 29.85 0.15 1.34 16 18 C -0.55 -30.42 9.11 25.60 0.23 -30.18 16 19 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 H 0.05 0.91 6.53 -2.39 -0.02 0.90 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 0.95 6.73 -2.39 -0.02 0.94 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.78 7.43 -2.39 -0.02 1.76 16 31 H 0.15 2.33 4.27 -2.91 -0.01 2.31 16 32 H 0.15 1.49 8.06 -2.92 -0.02 1.47 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 36 H 0.09 0.74 8.09 -2.38 -0.02 0.72 16 37 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.41 11.43 7.83 -92.71 -0.73 10.70 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -71.67 354.16 4.05 -67.62 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.28 Total: 18.43 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.37 Total: -15.71 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.22 Total: -79.78 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.40 Total: -36.02 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.67 4.05 -67.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272969505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.053 kcal (2) G-P(sol) polarization free energy of solvation -71.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds